Gaus015573.1
Basic Information
- Insect
- Glossina austeni
- Gene Symbol
- -
- Assembly
- GCA_000688735.1
- Location
- Scaffold461:75135-85343[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.2e-11 5.4e-08 32.5 0.0 1 38 361 399 361 404 0.89 2 4 6.8e-14 1.6e-10 40.6 0.1 2 39 416 453 415 456 0.94 3 4 5.6e-17 1.4e-13 50.5 0.0 1 45 470 515 470 515 0.97 4 4 7.7e-20 1.9e-16 59.6 0.0 1 45 522 567 522 567 0.97
Sequence Information
- Coding Sequence
- ATGGGTCTCCTGCGTACCGCCGAACAATTAAAAATCAAAGGTCTTTGTGAGACGGCTGAGAATGCGGATGATTTAAACGACGCTGCCACTGCTACCATCACTGTCTCCGAGAATATACAACAAGCCGTGGTCGGCAATATTGTTAACGCCACTGTTGTACAAGGTCAACCCTCACCGCCCATACCCCACCAACATCAAcagcagcagcagcagcaacagcagcagcagTTAGCCAATGCTGCTGTTCTCGCACACTCTGTAAGTCCCGCCAGTGCACAACAATTTGTTACCAGTGGTCAGTTAGTTACTTCGACACCAGTCGTAACGCAGCAACAACAGCAATTAAGTCGTAAATCTCGTGTACGTAAACGTTCAAAATCGCCAGATTTGCAACAGTTACAGCAACAGCATCATCAGCAATCTCAACATCCGCAAGCAATTCTTATACAAAATCAGAATCAAGCTGCCATCGTTAGTTTGCAACAGACATCGGCTGGAAATTATATACCGGTATCGGGTGTTCAAACGGTTCAAACCACTTCGGGTGGCGGACCACCGCAACCTGGTACTACAATAGTAACGGCAGACGATTCCGACTCTGATAAACCGACTCTGCAGAAAATCTGTAAAACCGAAGAggcttcggcttcaccggcttcgacgtcatcagcttcggcCTCGAATAATGCAGCTGGCGTAACTGCAGTGGCCAGCTCAGGACCGGCGATTGTCACACAAATTGTAGTAGCACGCGACGGCAAAGATAAAAATATGACTAGTTTAGGCATGGGCATGAATGGCGGCATTTTAGGAGTACCGATGGGCTTTTTGGACTTCGCTCCTGAACCCCCAGCACCTTCAGCCACTCCTGTCACTGTTACTGAACACGTAGATCTGTCTTGTAACCCTAGTACAGACACAAGAGATCTATCGAACATGTACAATTCCGACACGAGCGATGATTCAATGATGATTGCTAATGGTTCACCCCACGATCAAAATGAACCCCATTACACGAATTTAGATCAACAACAGCATGGTGGCGAACTCAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCTCTAAAGAATCAAAATATGAGTCTGACGAAGGCCTCCGTTACATATGGCATCCCCTCAACTACACTGTGGCAGCGTGCTCATCGTATGGGCATTGAAACGCCTAAAAAGGAGGGTGGTACAAAATCGTGGAATGAAGATTCATTGAATAATGCCTTGGACGCGTTGCGTTCCGGACAAATATCGGCTAATAAAGCGTCTAAGGCCTACGGTATACCTTCCTCGACTTTATATAAAATTGCTCGACGTGAAGGCATACGCTTAGCGGCACCATTCAATGCAGCACCCACCACTTGGACTCAAGATGATTTGGATCGAGCCCTGGCGGCTATACGGGCCGGTCATACATCGGTACAGAAGGCAAGTGCTGAGTTTGGTATACCAACAGGCACTTTATACGGCCGCTGTAAACGTGAAGGTATAGAGCTATCAAGGTCAAATCCTACACCTTGGTCCGAGGATGCTATGAATGAAGCCTTAAATTCAGTACGCGTGGGTCAAATGTCCATTAATCAAGCCGCTATAAATTATAATTTACCCTATAGTTCTCTGTATGGCCGATTTAAGCGAGGTAAATACGATGTCTCCAATGCCAGTGGCACATCACTGAATAACACCTCGGGCAATACATCAGCCAGCATTGAAATTATTGAACATAGTCAAGAGAATTCGCAACAGTTCCAGTATAGTCCATCGCCGCACCAATCGGGTCACGGTAGTAGTACACCGCAGCAGCAAACAGGCCAAACACCACAGCATATTCAACAGCATGTGAAGAAATTTACTCTGATTTCGCATCATGACGAATATCCAAATGGTGGCTGCCAAAAAAGTAGTGAGCCTAATCTATGCTGCGAGCAGTATTTGTTAGTTTTGAAAAATTAA
- Protein Sequence
- MGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNATVVQGQPSPPIPHQHQQQQQQQQQQQLANAAVLAHSVSPASAQQFVTSGQLVTSTPVVTQQQQQLSRKSRVRKRSKSPDLQQLQQQHHQQSQHPQAILIQNQNQAAIVSLQQTSAGNYIPVSGVQTVQTTSGGGPPQPGTTIVTADDSDSDKPTLQKICKTEEASASPASTSSASASNNAAGVTAVASSGPAIVTQIVVARDGKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNMYNSDTSDDSMMIANGSPHDQNEPHYTNLDQQQHGGELKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALDALRSGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTQDDLDRALAAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAINYNLPYSSLYGRFKRGKYDVSNASGTSLNNTSGNTSASIEIIEHSQENSQQFQYSPSPHQSGHGSSTPQQQTGQTPQHIQQHVKKFTLISHHDEYPNGGCQKSSEPNLCCEQYLLVLKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00748140;
- 90% Identity
- iTF_00747386;
- 80% Identity
- -