Gaus013417.1
Basic Information
- Insect
- Glossina austeni
- Gene Symbol
- lrrfip2
- Assembly
- GCA_000688735.1
- Location
- Scaffold11:3130906-3134386[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.2e-112 1.4e-107 359.6 25.5 1 299 30 322 30 323 0.92 2 2 0.04 7.7e+02 -0.8 4.0 219 245 350 376 325 397 0.47
Sequence Information
- Coding Sequence
- ATGGATACTTCAAATGTCGTAGGACGGCGACGAGTTAATTCTCGTATAAATGCTGAAGATCAGGCGTTAGATCAAATTGCCAAAGAGGCGGAGGCCCGTTTGGCAGCAAGAAGGCAGGCAAGAGCTGAGGCACGCGAAATACGTATGCGTGAGCTAGAGAGGCAACAAAAGGAACAAGAGCAGAATGCGGATCGCGTGTTTGATATGCATAATTCCTCGGGAATTGATACAATATCGCGTAATAGGATTAGTTTAGGATGTTCGCCCATCAGCGGTTTGCTTAACACAGCCCGTGGTAACTCAATGTCTTCTAGGCGTAGTAGCGAAGATTCATTAGAAGAAGAAGGGCGAAGCTTAAGAGATATACGTTACGAACTAAAGGGAGTGGAGGAGAGGTTTCGTAAAGCTATGATAGCCAACGCTCAACTGGATAATGAACGTGCCTCACACACATACCAAATTCAATTGTTGAAAGACAAATTGGAAGAAATGGAGGAATCATATGCTCAATTGCAACGTGAATTTAGGGAAAAATCCCGAGACTGCAATGTACTAAAGCGCACTATAGACAAGTTAAGCGAAGATCTAAAATTGGTGCAAGGTCAGCTATGTGAGCGAGACACTTTAATTGCGGAGCAAGGCTTGGTTGTAGTTGCTATTGAAAATGAAGACGGTACCGATGCCAGGAGAGCACTAGTCAGTGTTGAAAATGCAGAATTGTTAGGTTCTGTACAAGGTTCATTAGATATTCGACTaaaaaaaTTTAACGAAGAGAAGCAGCTGCTTCAGGCTGATTTACAACTTCTCCAAGAAAAGTTAGAGACGTTCAAAAGTTCGGGAAGAGGACGCGTTAATACAACTAATGGTCCATTCAGTACCGAAGACGATTATGAAGCTCAAAGAGAGACTAATAAAATCATATCTGATTACAAGTATAAATTACAAAAGGCCGAACAAGAAATTGCTAATCTGCAAGCTAGCTTAGCTCGATCAGAAAGCCAAGTTATTCGGTATAAGAGCACCGCAGAAGCTGCTGAAAAAGCAGAGGCTGAATTAAAAATAGAAAGAAGGAAACTACAAAGAGAGAATCGTGAAGCTATGGAAAAGTTGGAAGAATTGGAAACATCAAATAATCACTTATTGAAACGATTGGATAAATTAAAAAATGCGAAAAGCGCTCTTCTAAAAGATCTTTGA
- Protein Sequence
- MDTSNVVGRRRVNSRINAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMHNSSGIDTISRNRISLGCSPISGLLNTARGNSMSSRRSSEDSLEEEGRSLRDIRYELKGVEERFRKAMIANAQLDNERASHTYQIQLLKDKLEEMEESYAQLQREFREKSRDCNVLKRTIDKLSEDLKLVQGQLCERDTLIAEQGLVVVAIENEDGTDARRALVSVENAELLGSVQGSLDIRLKKFNEEKQLLQADLQLLQEKLETFKSSGRGRVNTTNGPFSTEDDYEAQRETNKIISDYKYKLQKAEQEIANLQASLARSESQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMEKLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00331516;
- 90% Identity
- iTF_00749698;
- 80% Identity
- -