Gspa023030.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Globia sparganii
Gene Symbol
-
Assembly
GCA_949316385.1
Location
OX438669.1:19587654-19590350[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.6e-08 1.8e-05 25.4 0.0 2 40 26 65 25 67 0.93

Sequence Information

Coding Sequence
ATGAATAACAATAAGGCTaaaaacacaagaaaaaaaagaagaatattAGGATCGCGAGCATACAGAAATTATTCAGAGGAAATGTTAGAGTTAGCAGTTGATATGGTAGAAAATAACAGGATGTCAAGTCGGGAGGCAGAAAAGAGGTTCGGGATTCCACGACGGACGATATtgaacaaagttaaaaaaattcaCTTGAAACCAGCTGGAGGACAGACGAAACTCACTTACGAAGAGGAAGAAAAACTGGCAAACGTGTTGTTAGCTTCAGCAGATTACGGCAGCCCCATGACGAAAATGGATGTAAAAATGTTAATCtataaatatttagaaaaaaattctCGAGCTGATTTGTTCGATGGCAAACTACCCAGTGATACGTGGGTGGAAGGATTTTTAAACAGACATCGTTCGAAATTGACCATCAGAACgactcaaaatataaaaaaggtacGGGCTGAAAAAGGATTAGAAGAAATGGAGCAATTTTATACTAATTTAAGTGAAACCCTAAAAGATGTACCACCGATGAACATACTGAACTACGACGAGACTAACTTATCCGACAACCCAGGCACTTCCAAATGTGTTTTTAGAAGGGGCGTCAAACATCCTGAAAGGATTCTAAATAGCACAAAGAGTTGCGTTTCCATCATGTTCACTGCAAGCGCAGCTGGGACATGTCTACCAACATATGTGGTTTATAAATCTTCAAATTTATATTCCGAGTGGCTTGAAGGAGGCCCAGCTGGAACTAGATACAATTGTTCAAAATCAGGTTGGTTTGATACCGCTTCATTCGAAgattatttcaaaactataGTGGTTGAATGGGCGAAACAAATTCCCGGGCCAAAAGTAGTCATTGGTGATAATTTGTCTTCCCACATAAATATTGAAGTTGTAGAGTTGTGTCAAAAACACAACATAAAGTTGGTATTTTTACCACCAAACTCCACTCACCTAACACAACCATTGGACGTAGCGTACTTTGGTCCACTAAAAAGAGAATGGAAAAAGATTCTGTTGGATTACAAACTGAAGAATCCAGGACAAACAACCttgaataaaaaacattttccaaAACTTTTGGCCCAATTActagaaaatatgaaacataagGAAAGCAATAACATTATAAGTGGCTTCAGAGCCACAGGAATATGGCCTGTAAATGCACGAAATGTTTTTAAGAGAATCCCAGAGTATTTCGACGATTCAGAATACGGAATTGATACAACTTTATTGGATTATCTCAAAGAATCAAGGGCTGCTAAGCCAATGCAAGTGAAAAGAAGTAAGAAATTACGCACAGAACCCGGAAAGTCAGTATGTGCTGACGATATCTCGACAATAAATAGTCAACTAACCGCACGAAAAAAGACATCTGTAAGAAAAAATACCAAGAAGGAAACAGTAGAGACTAAccaagaaagagagagagaagagATTATGGCGTTGTTGGACACAGAAAATGAGATATACTTGGATGTAATTACAGGTGAAGTAATAGAAAGGAAGGAAACGATTGATTACGATATGCCATCGACCTCATCTGGTAACATCGGTTGGGAAAGTACTAAGGaggaaacaataaaaactaacgAAGAAAGAGAGACAGAAAAGATTAGGGCGTCGTGGGACACTGAAAATGAGATATACTTAGATGAAATTACAGGTGAAGTGATAGGAAGGGAGGAAACGATTGAATACGATATGCCGTCGACCTCATCTGGAATCATCGGAAAACCAGCACTACGGCCCCTGTTTTCACCGGTGATCTATAATCCAGCCAGACTTGATGcacttagtattaaaattatcaacatGCAATTAGATTCACCAGCGCACGATACTAACGCTCAACTGACCGACGTCtgtgtattaaataaaaaatttaaaagtgacAGCCAGAATCGGCCTTTTGTAGCTTATGGTGAAAGTGATACTCCAGGGTGTTTAAGATCATTGACGAATAGTTCATCTACATCtaaagttataataacttcAGATGTTAAAGTAACCCCTAAGGAAATGAAGGAGATAAAGAAGAAGATTAAATTAGGTACTGAAGTCATCGGAAAATCAGCTCTACAGTTAAAAATTGTCACAaaaaaagtggaaaatgaaaatgcattacatgaaaaaaataaaagaaaacgggAAAATGTCATTACTCGAAGAAGTACAAAGATTACGAAACGGAAGAAATTGAGATCGTATTGTGAAACGAGTTCAGAATCGGATATTTTGAGTATAGCAAACACTGATTCTGATTATGAAGCACTTGAATTTGATGAATATTTATCAACATATTTGGAAGAGATGGACAATAAGGAAAATTGTGAGCCAGAAAACTTCACTACAACATTTGGGCTCAGTGATCTATGCTATTTTACCAGCGAtgtagatttaaaaaaagaggACTGGGTTGTCGTAAAATTTGCGACAAAAAGGAGCATAAAGCACTTCGTCGGTCGTGTTTTATATATGAAAAACAGTATTCCCACTGTGAAATTTGCAAGAAAAGTGAAAAATGCAAAAGATGGTAAAATGATTTTCACGTACCCGAACGTGGAGGATGTGTGTGAAGTTAATCGTGATGATGTGGAAATAGTATTACCTCCACCAAATATTTCTAGACGAGGCcaaataatatttgatattacCTTTAATCCTTCCTATAACGtgcaataa
Protein Sequence
MNNNKAKNTRKKRRILGSRAYRNYSEEMLELAVDMVENNRMSSREAEKRFGIPRRTILNKVKKIHLKPAGGQTKLTYEEEEKLANVLLASADYGSPMTKMDVKMLIYKYLEKNSRADLFDGKLPSDTWVEGFLNRHRSKLTIRTTQNIKKVRAEKGLEEMEQFYTNLSETLKDVPPMNILNYDETNLSDNPGTSKCVFRRGVKHPERILNSTKSCVSIMFTASAAGTCLPTYVVYKSSNLYSEWLEGGPAGTRYNCSKSGWFDTASFEDYFKTIVVEWAKQIPGPKVVIGDNLSSHINIEVVELCQKHNIKLVFLPPNSTHLTQPLDVAYFGPLKREWKKILLDYKLKNPGQTTLNKKHFPKLLAQLLENMKHKESNNIISGFRATGIWPVNARNVFKRIPEYFDDSEYGIDTTLLDYLKESRAAKPMQVKRSKKLRTEPGKSVCADDISTINSQLTARKKTSVRKNTKKETVETNQEREREEIMALLDTENEIYLDVITGEVIERKETIDYDMPSTSSGNIGWESTKEETIKTNEERETEKIRASWDTENEIYLDEITGEVIGREETIEYDMPSTSSGIIGKPALRPLFSPVIYNPARLDALSIKIINMQLDSPAHDTNAQLTDVCVLNKKFKSDSQNRPFVAYGESDTPGCLRSLTNSSSTSKVIITSDVKVTPKEMKEIKKKIKLGTEVIGKSALQLKIVTKKVENENALHEKNKRKRENVITRRSTKITKRKKLRSYCETSSESDILSIANTDSDYEALEFDEYLSTYLEEMDNKENCEPENFTTTFGLSDLCYFTSDVDLKKEDWVVVKFATKRSIKHFVGRVLYMKNSIPTVKFARKVKNAKDGKMIFTYPNVEDVCEVNRDDVEIVLPPPNISRRGQIIFDITFNPSYNVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00634378;
90% Identity
iTF_00745622; iTF_00373994; iTF_00122326; iTF_00374038;
80% Identity
iTF_00745622;