Gale006257.1
Basic Information
- Insect
- Glaucopsyche alexis
- Gene Symbol
- -
- Assembly
- GCA_905404095.1
- Location
- FR990044.1:17605657-17625353[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.1 1.1e+04 -2.2 0.0 21 32 48 59 47 79 0.65 2 9 0.0083 85 4.5 0.1 26 48 184 206 179 208 0.89 3 9 0.0083 84 4.5 0.1 26 48 250 272 243 274 0.89 4 9 0.86 8.7e+03 -1.9 0.0 21 32 312 323 310 329 0.79 5 9 0.00063 6.4 8.1 0.1 25 48 437 460 431 462 0.88 6 9 0.97 9.8e+03 -2.1 0.0 21 30 496 505 494 525 0.83 7 9 0.17 1.7e+03 0.4 0.0 21 45 549 577 547 585 0.71 8 9 0.013 1.3e+02 3.9 0.0 22 48 602 628 599 630 0.87 9 9 0.13 1.3e+03 0.7 0.0 20 31 667 678 648 702 0.83
Sequence Information
- Coding Sequence
- ATGTCCATCAAGTCTAGTGATAAAATGAGAGGTCATATTAAGAGGAATCATCCCGTTTTTTACACCAGCAAGATGGATGAAAAAAGTCCACAAAAACGTAGGTCACGTCGGAGTTGGTTGTGGACGTACTATGTGCCCTTCTCGGACAATCGCGCGACTTGCAAGTTCTGCGACAAGTCTATGTCTTACGCCGGAGGCTCTACTGGGAACCTCGTCAAGCATCTTAGAAAAATTCATAACACGGACAAGAGCGAAGgTTGGATTTGGTTAGTGTTTGAAGAGGAAGATGATAATAACGATAaatatttgtgcaaaatatgtcACTTCAAATGTCCTAAGACTGAAGACTTGAAGAACGATCTTCAGATAATATGTGACCATTTGAAAAAAGAACACGGCTTGAAGTCGGGTGATCAAGTCTCAACTGTTCCTGGCGATGACAGTTTAGTGATTGAAGTACCTGATAAAGATGAAAGCGAACAAGAAAGTAAACGTGGAAATCGACGCTGGGTTCGGGAATACTTTGAAAAGTTAACAGATACAACATTCCGTTGTGACCTGTGCAAGATTTCCATTAAGTATAGTAGTAACATGTTACGTCATATTCAGAGGAATCATTCCGATCTTTACAACAGTAAAGCGGGTACAAAAGtcataaaaaaagaaaagaagagTCCTCGACGGGGTAAACGTGGAAATCGAAGCTGGGTTCGGGAATACTTTGAAAAGTTAACAGATACAACATTCCGTTGTGCACTGTGCGAGATCTCCATTAAGTATAGTAGTAACATGTTACGTCATATTCAGAGGAATCATTCTGATCTTTACAACAGTAAAGCGGATACAAAAGTCATAAAAAAAGAAGAGGAAAGATCTCGACGGAAACGTGGTAGGCCGCGACGGAGTTGGGTGTGGGCGTACTTTGTGCGCATCTCGGACAGTCGCGCAACTTGCAAGCTCTGCGACAAATCTATTAGCCACGGCGGCGGCACCACTGGCAACTTTATTGCCCATCTTAAGAAAGTTCATAACAAGAGCGAAGGTTGGATTTGGTTAGTGTTCGAAGAAgaagatgataatgatgaatatTCATGCAGAATATGTAGCTTCAAATGCACTAAGACTGACGACTTGAAGAATGATCTTCAGACAATACGTGATCATTTGAAAACAGAACACGGCTTGGAGTCGGGTGATCAAGTCTCTACTGTTCCTAGCGATGGAAATAAAGATGAAAGCGAAGATGAAAGTAAACGTGGAAACCGACGCTGGCTCCGGGAATACTTTGAGAAGTTAACAGAGACAACGTTCCGCTGTAACCTGTGCAAGGCATCCATAAAATATAGTAATAACTTGTTGCAACATATTAAGAGGAAACATTCAGATCTTTACAACAGTAAAGTGGATACAAAAGTCATGAAAGAAGAACACGAAAGACCGCCACGGCAACATCGGAGTTGGGTGTGGGCGTACTTTGAGCGCACCTCGGACAGTCGCGCGACTTGCAAGCTCTGCGACAAGTCTACTAGCCTAGGCCGCGGAACTACTGGCAACCTCATCGTCCATCTTAGGAAAATTCATCACAAGAGCGAAGaAATTGGCAGGCCACGTCGGAGTTGGGTGTGGGCGTACTTTGTGCGCATCTCGGATAGTCGCGCAACTTGCAAGCTCTGCGACAAGTCTATAGGGCACGGCCGCGGCACCACTGGCAACCTCATCGTCCATCTTAAGAAAGTTCATCACAAGAGCGAagGTAAACGTGGAAACCGCCAATGGCTTCGGGAGTACTTTGAAAAGTTAACAGAGAAAACGTTCCTCTGTAACATGTGCAAGATGACGATAAAGTACAGTAATAACATGTTGCAACATATTAGGAGGAAACATTCAGATCTTTACAACAGTAAAGTGGATACAAAAGACataaaagaagaaaataaacGACCACCACGGAAACGCGGCAGGCCACGACGGAGTTGGGTGTGGTCATACTTTGTGCGCACCTCCGAAAATCGCGCGACTTGCAAGCTCTGTGACAAGTCTATGGGCCACGGCTTCGGCACCACTGGCAACCTCATTAACCATCTTAAGAAAATTCACCACAAGAGCGAAGGTTGGGTTTGGTTAGTGTTTGAAGAGGAAGATGAGAACGACAAATATTCGTGCAGAATATGTAGCTTCAAATGCACTAAGACTGACGACTTGAAGAATGATCTTCAGACAATATGTAATCATTTGAAAACAGAACACGGCTTGGAGTCGGGTGATCAAGTCTCTACTGTTCCTGAAGATGGAAGTTTAGAGactgaaaaacaaaataaagttgAAAGCGAAGAAGAAAGTGAATGA
- Protein Sequence
- MSIKSSDKMRGHIKRNHPVFYTSKMDEKSPQKRRSRRSWLWTYYVPFSDNRATCKFCDKSMSYAGGSTGNLVKHLRKIHNTDKSEGWIWLVFEEEDDNNDKYLCKICHFKCPKTEDLKNDLQIICDHLKKEHGLKSGDQVSTVPGDDSLVIEVPDKDESEQESKRGNRRWVREYFEKLTDTTFRCDLCKISIKYSSNMLRHIQRNHSDLYNSKAGTKVIKKEKKSPRRGKRGNRSWVREYFEKLTDTTFRCALCEISIKYSSNMLRHIQRNHSDLYNSKADTKVIKKEEERSRRKRGRPRRSWVWAYFVRISDSRATCKLCDKSISHGGGTTGNFIAHLKKVHNKSEGWIWLVFEEEDDNDEYSCRICSFKCTKTDDLKNDLQTIRDHLKTEHGLESGDQVSTVPSDGNKDESEDESKRGNRRWLREYFEKLTETTFRCNLCKASIKYSNNLLQHIKRKHSDLYNSKVDTKVMKEEHERPPRQHRSWVWAYFERTSDSRATCKLCDKSTSLGRGTTGNLIVHLRKIHHKSEEIGRPRRSWVWAYFVRISDSRATCKLCDKSIGHGRGTTGNLIVHLKKVHHKSEGKRGNRQWLREYFEKLTEKTFLCNMCKMTIKYSNNMLQHIRRKHSDLYNSKVDTKDIKEENKRPPRKRGRPRRSWVWSYFVRTSENRATCKLCDKSMGHGFGTTGNLINHLKKIHHKSEGWVWLVFEEEDENDKYSCRICSFKCTKTDDLKNDLQTICNHLKTEHGLESGDQVSTVPEDGSLETEKQNKVESEEESE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00744918;
- 90% Identity
- iTF_00744918;
- 80% Identity
- iTF_00744918;