Basic Information

Insect: Gerris buenoi
Gene Symbol: RREB1
Assembly: GCA_001010745.2
Location: KZ651213.1:551708-569644[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 9.5e-05 0.013 17.5 0.0 1 23 48 71 48 71 0.98

2 15 0.0053 0.72 12.0 0.1 3 23 79 99 79 99 0.98

3 15 2.8e-07 3.8e-05 25.4 0.8 1 23 105 127 105 127 0.99

4 15 0.033 4.5 9.5 0.2 1 23 152 175 152 175 0.93

5 15 0.17 24 7.2 0.5 2 23 181 203 181 203 0.93

6 15 0.018 2.4 10.3 0.1 1 23 324 346 324 346 0.97

7 15 0.0037 0.51 12.5 0.3 1 23 354 376 354 376 0.99

8 15 0.00074 0.1 14.7 3.1 1 23 382 405 382 405 0.97

9 15 0.011 1.5 11.0 2.1 3 23 604 625 602 625 0.96

10 15 0.00057 0.078 15.0 0.2 2 23 741 762 740 762 0.97

11 15 0.11 14 7.9 6.5 1 23 768 791 768 791 0.97

12 15 0.078 11 8.3 0.3 1 23 806 830 806 830 0.94

13 15 0.039 5.3 9.2 0.8 1 23 845 868 845 868 0.96

14 15 0.0017 0.23 13.5 0.2 3 23 911 931 909 931 0.96

15 15 0.0049 0.66 12.1 5.6 1 23 937 959 937 959 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	9.5e-05	0.013	17.5	0.0	1	23	48	71	48	71	0.98
2	15	0.0053	0.72	12.0	0.1	3	23	79	99	79	99	0.98
3	15	2.8e-07	3.8e-05	25.4	0.8	1	23	105	127	105	127	0.99
4	15	0.033	4.5	9.5	0.2	1	23	152	175	152	175	0.93
5	15	0.17	24	7.2	0.5	2	23	181	203	181	203	0.93
6	15	0.018	2.4	10.3	0.1	1	23	324	346	324	346	0.97
7	15	0.0037	0.51	12.5	0.3	1	23	354	376	354	376	0.99
8	15	0.00074	0.1	14.7	3.1	1	23	382	405	382	405	0.97
9	15	0.011	1.5	11.0	2.1	3	23	604	625	602	625	0.96
10	15	0.00057	0.078	15.0	0.2	2	23	741	762	740	762	0.97
11	15	0.11	14	7.9	6.5	1	23	768	791	768	791	0.97
12	15	0.078	11	8.3	0.3	1	23	806	830	806	830	0.94
13	15	0.039	5.3	9.2	0.8	1	23	845	868	845	868	0.96
14	15	0.0017	0.23	13.5	0.2	3	23	911	931	909	931	0.96
15	15	0.0049	0.66	12.1	5.6	1	23	937	959	937	959	0.98

Sequence Information

Coding Sequence: ATGCAGGACACTGGAAGCGACTCTGCCCCTCCTTCCTCGCCTACCCTACCTCAAGattTATCTTCTAAGCATATGAGTTCTTTTGAAAAAAGTACTTCAAGCTGCAGTGAAGAAGCGGAAACTTCTAGCTCAGAGGAAGGATACAAGTGTCCAGGGTGTGAGGTAGTAACAATTACAAGAGGAGAACTGACAGCACACCTAAGATCAGCTCACGGGAGCGCTGCCACAGGAGGTTGTAGTCTATGCGGCAAGGTGTTGGGGTCCCAGGCATCACTAGATAGGCATCTTCTGGTGCACTCGGGAGAACGACCCTTCAAGTGTCAAGATTGTGGCCTCGCCTTTACAACAAACGGCAACATGAACAGACACCTTCGCTCACATAGACATCCCAAAAGAAAACTCGAGTGTAACAACAACGTCGACGAACCTAGGAAGAAGCCAAAACCTGAACCCTACGATTGCCCGAGATGCGAACGTGATTTTGTAAGTTTACACGTTCTAGAAAGCCATCTAGAAGAAGCCCACCCTGAGTGGGCTGCTCGCTGCTTGAGTTGTGGTCTTGTATTCAAATCTTACAGAGTTCTCAATCTCCACCGCTTTATGGTCCACTATCAACCTGACACTCCACGTCCCGACCTTTCTTTCGTTGAGTTTTCTACTGAAAAGTTTCCACTCATTGCAGAAGCCATGACTCGTCCTCTTCCTTCTCCCCCACCGACCGATTCCCAAAAGGACTTCTTTGAAACTCTTGATTTGAAGAAATCTCCTGTTAAAAAAGAAGCTCCTGAGATAATTACTGACATTATAACAAACGGTATGATAAAGGAAGAACCGACAGAAGATGATGTGAAAGACATCGACATTATTAACTCTGTAGACATAACGCCACCAGACTCCAACTATAAAGAAGTTGAAGAAGAGCAGGACTGCTTTGCCTCTGAATTGAGGAAGATGAAAGCTAAAGGAGAATTTCCTTGCAGGCTGTGCCAAGCGGTATTCCCTAATCTTCGAGCCCTCAAAGGCCACAACAGGGTTCATCTGGCTGGAGGTGGCAGGGCATTTCAATGTAACATGTGCCCTTATTTTGACAGCGACAAAGCAGCAGTTATACGCCACATGAGAACGCACAATGGTGACAGACCTTATGAATGTTCCCTTTGCAATTACGCTTTCACGACTAAAGCTAACTGTGAAAGACATTTGAGGAACAGGCATGCGGCTTCAAGAGATGTAACAAAAAGATCGATTCTTTACCACCCAGAGCCGGACCAAAATTCAGAGAAGGACTGCAAAGTGGATGTCAAAAGGTCTCTCTTTCCTGCAGACGACCCGTCCTTCGCCAGGGATTCTGATAGTCAGTCTGATGAAGATGATTCTGATAGGGAAGAAGTCCCACTCGATCTCAGTATGGATGCTTTAGATCTTCGTAAGAAAAAGCCAGAAGAAGAACCAGAAGATCTATCTaagaaaaatagagaaataaccGTCCCTAAGGTAGACGTCTTTTACCCTAATCCTCACTTGATTGCTGGTTTCACACCACCCTTCTCGCCTTATTATGTTCCACCAATGTACTACCAGGAAAGGGAATTGGCAGAAATGAAAGAAAGAATACAAAAGGAATTGATACGAAGCATAAGGCTCTCCTCAGGAGGAGTAGTCGTGCAGGAACCTCCACCTCCATCTTCCCCTGAACCTCCTCCACCTCCGCCTAAGAAAGTGGAACCGGCTGTGAAAATGGTCATTAAGAATGGTGTTCTTGTACCTAAACAAAAACAGCGCAGGTACAGGACTGAACGACCTTTTGGTTGTGAGCACTGTTCTGCTAGGTTCACCTTGAGATCCAACATGGAACGACATGTTAAACAGCAGCATCCACAGTTGTGGAGTCAAAGGCAACGAGGTGGAGGTGGTGGAGGAAGAAGAAGTCGGACGGAAACCAATGACCCAGAAGTAAGAGCTGCCCTAGCTGAAGCAATTAAAGCAAAAGAACCAAAACCCAAAGACTCGGATCTGGCATCAGTCTCCAAGCTTTTAGATAATGCTTCTACCCAAACCTTCAAGCAGTTTTTCTCATCTGAAGATGACGCTGCTCACAGTGACGAAGAAGGCCTTGTTGCTTCACACTCAGAGGAAAATTCTGGATCTGATGAAGCcaagTCTGAAGAAGGTGGGCTTACCAAGAAAAAGAGTGCTTACTCCTTAGCACCCAACAGGGTGTCATGCCCATACTGTTCTCGGGAATTCCCTTGGAGCTCAAGTTTGAGGCGTCATGTTTTGACACACACTGGCCAGAAACCGTTTAAGTGCACACATTGCCCTCTGCTCTTCACAACAAAATCCAATTGTGACCGACATCTCCTTAGAAAACATTCCTCTGGCACTCGACCTCTATCATCCAACCATGATAAACCATTCAGGTGTGAAAAATGTCCTGGAAGCAGATTCCCCAGTTCTGAAGCACTTCGTCGACACACAGCTTCAAGGCATGATGGTGATTCTCATGACACATCAGCTTGCTCTGAACAGCCTTTCAAATGTCACCTTTGTGAAGCCTCTTTCAGAGAACGACAAGAAGCTCTTGATCATCTTCAAATCTCCCACCCTCTGGATTACGCCTCATTACTTGCTAAGGGAGCACTTGATTCATCATCAGGAGATGAAGAAGCTGACGACCCTCAACCAACTGATAATACCAAATTCCCAGATTATACAAACAGAAAGGTGATGTGTGCTCTTTGCGTAAGGAGGTTTTGGTCAGCTGAAGACTTAAGAAGGCACATGCGAACACACACTGGTGAGCGTCCATTTTCCTGTGATGTATGCCAAAGACGTTTTACCCTCAAACATTCGATGCTACGCCATAGGAAAAAGCACGATCCCTCTTCACCACCACCAACACTTCTATTAGCCAATCACCATCGAGATCACATACCACATCATCAGAATGCAGCAGCACAGACCAATAACAATGGAGAGGAGACGGACCTCATATGCAGTCTTCTAGGTTTAAGGGATACATCATTAGTAGATAAAATGATTGAAAGGAAAGACCAAGCTGCCTTACTTCTTGGTATACATTCCCAGTCACAGACAACTAGCCCTCCTTGA
Protein Sequence: MQDTGSDSAPPSSPTLPQDLSSKHMSSFEKSTSSCSEEAETSSSEEGYKCPGCEVVTITRGELTAHLRSAHGSAATGGCSLCGKVLGSQASLDRHLLVHSGERPFKCQDCGLAFTTNGNMNRHLRSHRHPKRKLECNNNVDEPRKKPKPEPYDCPRCERDFVSLHVLESHLEEAHPEWAARCLSCGLVFKSYRVLNLHRFMVHYQPDTPRPDLSFVEFSTEKFPLIAEAMTRPLPSPPPTDSQKDFFETLDLKKSPVKKEAPEIITDIITNGMIKEEPTEDDVKDIDIINSVDITPPDSNYKEVEEEQDCFASELRKMKAKGEFPCRLCQAVFPNLRALKGHNRVHLAGGGRAFQCNMCPYFDSDKAAVIRHMRTHNGDRPYECSLCNYAFTTKANCERHLRNRHAASRDVTKRSILYHPEPDQNSEKDCKVDVKRSLFPADDPSFARDSDSQSDEDDSDREEVPLDLSMDALDLRKKKPEEEPEDLSKKNREITVPKVDVFYPNPHLIAGFTPPFSPYYVPPMYYQERELAEMKERIQKELIRSIRLSSGGVVVQEPPPPSSPEPPPPPPKKVEPAVKMVIKNGVLVPKQKQRRYRTERPFGCEHCSARFTLRSNMERHVKQQHPQLWSQRQRGGGGGGRRSRTETNDPEVRAALAEAIKAKEPKPKDSDLASVSKLLDNASTQTFKQFFSSEDDAAHSDEEGLVASHSEENSGSDEAKSEEGGLTKKKSAYSLAPNRVSCPYCSREFPWSSSLRRHVLTHTGQKPFKCTHCPLLFTTKSNCDRHLLRKHSSGTRPLSSNHDKPFRCEKCPGSRFPSSEALRRHTASRHDGDSHDTSACSEQPFKCHLCEASFRERQEALDHLQISHPLDYASLLAKGALDSSSGDEEADDPQPTDNTKFPDYTNRKVMCALCVRRFWSAEDLRRHMRTHTGERPFSCDVCQRRFTLKHSMLRHRKKHDPSSPPPTLLLANHHRDHIPHHQNAAAQTNNNGEETDLICSLLGLRDTSLVDKMIERKDQAALLLGIHSQSQTTSPP*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00743975; iTF_01009736;
90% Identity: iTF_00743975;
80% Identity: -