Basic Information

Insect: Gerris lacustris
Gene Symbol: RREB1
Assembly: GCA_951217055.1
Location: OX578278.1:17504143-17517417[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00024 0.04 16.0 0.0 1 23 113 136 113 136 0.97

2 15 0.0048 0.79 11.9 0.1 3 23 144 164 144 164 0.98

3 15 2.5e-07 4.2e-05 25.4 0.8 1 23 170 192 170 192 0.99

4 15 0.03 5 9.4 0.2 1 23 217 240 217 240 0.93

5 15 0.16 26 7.1 0.5 2 23 246 268 246 268 0.93

6 15 0.016 2.7 10.2 0.1 1 23 389 411 389 411 0.97

7 15 0.0034 0.56 12.4 0.3 1 23 419 441 419 441 0.99

8 15 0.00067 0.11 14.6 3.1 1 23 447 470 447 470 0.97

9 15 0.01 1.7 10.9 2.1 3 23 669 690 667 690 0.96

10 15 0.00052 0.086 14.9 0.2 2 23 806 827 805 827 0.97

11 15 0.096 16 7.8 6.5 1 23 833 856 833 856 0.97

12 15 0.071 12 8.2 0.3 1 23 871 895 871 895 0.94

13 15 0.036 5.9 9.1 0.8 1 23 910 933 910 933 0.96

14 15 0.0015 0.25 13.4 0.2 3 23 976 996 974 996 0.96

15 15 0.0044 0.73 12.0 5.6 1 23 1002 1024 1002 1024 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00024	0.04	16.0	0.0	1	23	113	136	113	136	0.97
2	15	0.0048	0.79	11.9	0.1	3	23	144	164	144	164	0.98
3	15	2.5e-07	4.2e-05	25.4	0.8	1	23	170	192	170	192	0.99
4	15	0.03	5	9.4	0.2	1	23	217	240	217	240	0.93
5	15	0.16	26	7.1	0.5	2	23	246	268	246	268	0.93
6	15	0.016	2.7	10.2	0.1	1	23	389	411	389	411	0.97
7	15	0.0034	0.56	12.4	0.3	1	23	419	441	419	441	0.99
8	15	0.00067	0.11	14.6	3.1	1	23	447	470	447	470	0.97
9	15	0.01	1.7	10.9	2.1	3	23	669	690	667	690	0.96
10	15	0.00052	0.086	14.9	0.2	2	23	806	827	805	827	0.97
11	15	0.096	16	7.8	6.5	1	23	833	856	833	856	0.97
12	15	0.071	12	8.2	0.3	1	23	871	895	871	895	0.94
13	15	0.036	5.9	9.1	0.8	1	23	910	933	910	933	0.96
14	15	0.0015	0.25	13.4	0.2	3	23	976	996	974	996	0.96
15	15	0.0044	0.73	12.0	5.6	1	23	1002	1024	1002	1024	0.98

Sequence Information

Coding Sequence: ATGGCGATATCGACCCTGCTGCCCTGGAGATACCAGACCACCACATCTCAGCATCGACCCGACCCGTCTCCCTGCCGACCCGAGCAACAAACCTCGCAGCCCTTTGTGTGGTCTGTCTGTAGCCCTGGAGATTGTCTCCGATACATCCCACATCTCTTCGTCCTATCGACCCTGTGCCGTTTGTATGTTGAAGAGATGCAGGACACTGGAAGCGACTCTGCCCCTCCTTCCTCGCCTACCCTACCTCAAGATTTGTCTTCTAAGCATATGAGTTCTTTTGAAAAAAGTACTTCAAGCTGCAGTGAAGAAGCGGAAACTTCTAGCTCAGAGGAAGGATACAAGTGTCCAGGGTGTGAGGTAGTAACAATTACAAGAGGAGAACTGACAGCACACCTAAGAGCAGCCCACGGGAGCGCTGCCACAGGAGGTTGTAGCTTATGCGGCAAGGTGTTGGGGTCCCAGGCATCACTAGATAGGCATCTTCTGGTGCACTCGGGAGAACGACCCTTCAAGTGTCAAGATTGCGGTCTCGCCTTTACTACAAACGGCAACATGAACAGACACCTTCGCTCCCATAGACATCCCAAAAGAAAACTCGAGTGTAACAACAATGTCGACGAACCTAGAAAGAAGCCAAAACCGGAACCCTACGATTGCCCGAGATGCGAACGTGATTTTGTAAGTTTACACGTTCTAGAAAGCCATCTAGAAGAAGCCCACCCTGAGTGGGCAGCCCGCTGCTTGAGTTGTGGGCTTGTATTCAAATCTTACAGAGTTCTCAATCTCCATCGCTTTATGGTCCACTATCAACCTGACACTCCACGTCCCGACCTTTCATTCGTTGAGTTTTCTACTGAAAAGTTTCCACTCATTGCAGAAGCCATGACACGTCCTCTTCCTTCTCCGCCACCGACTGATTCCCAAAAGGACTTCTTCGAAACTCTTGATTTGAAGAAATCTCCTGTTAAGAAAGAAGCTCCTGAGATAATTACTGAAATTATAACAAACGGTATGATTAAAGAAGAACCGACAGAGGATGATGTGAAAGACATCGACATTATTAACTCTGTAGATATAACGCCACCAGACTCCAACTATAAAGAAGTGGAAGAAGAGCAGGACTGCTTTGCCTCGGAATTGAGGAAGATGAAAGCTAAAGGAGAATTTCCTTGCAGGCTGTGCCAAGCAGTATTCCCTAATCTTCGAGCCCTTAAAGGCCACAACAGGGTTCATCTGGCTGGAGGTGGCAGGTCATTCCAATGTAACATGTGCCCTTATTTTGACAGCGACAAAGCGGCAGTTATACGCCACATGAGAACGCACAATGGGGACAGACCTTATGAGTGTTCCCTATGCAATTACGCTTTCACGACTAAAGCTAACTGTGAAAGACATTTGAGGAACAGGCATGCGGCTTCAAGAGATGTCACAAAAAGATCGATTCTTTACCATCCTGAGCCGGACCAAAATTCGGAGAAAGACTGCAAAGTGGATGTCAAAAGATCTCTCTTCCCTGCCGACGACCCGTCTTTTGCCAGGGATTCTGATAGTCAATCTGATGAAGATGATTCTGATAGAGAAGATGTCCCACTTGATCTCAGTATGGATGCTTTAGATCTTCGTAAGAAAAAGCCAGAAGAAGAACCAGAAGATCTATCTAAGAAAAATAGAGGAATAACCGTCCCTAAGGTAGACGTATTTTACCCTAGTCCTCATTTGATTGCTGGTTTCACCCCACCCTTCTCGCCTTATTATGTTCCACCTATGTACTACCAGGAAAGGGAATTGGCAGAAATGAAAGAAAGAATACAAAAGGAATTGATACGAAGCATAAGGCTTTCCTCAGGAGGAGTAGTCGTGCAGGAACCTCCACCTCCATCTTCCCCTGAACCTCCTCCACCTCCGCCTAAGAAAGTGGAACCGGCTGTAAAAATGGTCATTAAGAATGGCGTTCTTGTACCTAAGCAAAAGCAGCGCAGGTACAGGACTGAACGACCTTTTGGTTGTGAGCACTGTTCTGCAAGGTTCACCTTGAGATCCAACATGGAACGCCATGTTAAACAGCAGCATCCACAGTTATGGAGTCAAAGGCAACGAGGTGGAGGTGGTGGAGGAAGAAGAAGTCGGACGGAAACAAATGACCCAGAAGTAAGAGCTGCTCTGGCTGAAGCAATAAAAGCAAAAGAACCAAAACCCAAAGATTCGGATCTAGCATCAGTCTCAAAGCTTTTAGATAATGCTTCTACCCAAACCTTCAAGCAGTTTTTCTCATCTGAAGATGACGCTGCTCACAGTGATGAAGAAGGCCTTGTTGCTTCACACTCAGAGGAAAATTCTGGATCTGATGAAGctaaGTCTGAAGAAGGTGGGCTTACCAAGAAGAAGAGTGCTTACTCCTTAGCACCCAACAGGGTGTCATGTCCCTACTGTTCTCGGGAATTCCCTTGGAGCTCAAGTTTGAGGCGTCATGTTTTGACACACACAGGCCAGAAACCGTTTAAGTGCACACATTGCCCTCTGCTCTTCACAACAAAATCCAATTGTGACCGACATCTCCTTAGAAAACATTCCTCAGGCACTCGACCTTTATCATCCAACCATGATAAACCATTCAGATGTGAGAAATGTCCTGGAAGCAGATTCCCCAGTTCTGAAGCACTTCGTCGACACACAGCTTCAAGGCATGAGGGTGATTCTCATGAAACATCAGCTTGCTCTGAACAGCCTTTCAAATGTCACCTTTGTGAAGCTTCTTTCAGAGAACGGCAGGAAGCTCTTGATCATCTTCAAATCTCCCACCCTCTGGATTACGCCTCATTACTTGCTAAGGGAGCACTTGATTCATCATCAGGAGATGAAGAAGCTGACGACCCTCAACCAACTGATAATACCAAATTCCCAGATTATACAAACAGaaagGTCATGTGTGCTCTTTGCGTAAGGAGGTTTTGGTCAGCTGAAGACTTAAGAAGGCACATGCGAACACACACTGGTGAGCGTCCATTTTCCTGTGATGTATGCCAAAGACGTTTCACCCTTAAGCATTCGATGCTACGCCATAGGAAAAAGCACGATCCCTCTTCACCACCACCAACACTTCTATTAGCCAATCACCACCGAGATCACATACCACATCATCAGAATGCAGCAGCACAGACCAATAACAACGGAGAGGAGACGGACCTCATATGCAGTCTTCTAGGTTTAAGGGATACATCATTAGTAGATAAGATGATTGAAAGGAAAGACCAAGCTGCCTTACTTCTTGGTATACATTCCCAATCACAGACAACTAGCCCTCCTTGA
Protein Sequence: MAISTLLPWRYQTTTSQHRPDPSPCRPEQQTSQPFVWSVCSPGDCLRYIPHLFVLSTLCRLYVEEMQDTGSDSAPPSSPTLPQDLSSKHMSSFEKSTSSCSEEAETSSSEEGYKCPGCEVVTITRGELTAHLRAAHGSAATGGCSLCGKVLGSQASLDRHLLVHSGERPFKCQDCGLAFTTNGNMNRHLRSHRHPKRKLECNNNVDEPRKKPKPEPYDCPRCERDFVSLHVLESHLEEAHPEWAARCLSCGLVFKSYRVLNLHRFMVHYQPDTPRPDLSFVEFSTEKFPLIAEAMTRPLPSPPPTDSQKDFFETLDLKKSPVKKEAPEIITEIITNGMIKEEPTEDDVKDIDIINSVDITPPDSNYKEVEEEQDCFASELRKMKAKGEFPCRLCQAVFPNLRALKGHNRVHLAGGGRSFQCNMCPYFDSDKAAVIRHMRTHNGDRPYECSLCNYAFTTKANCERHLRNRHAASRDVTKRSILYHPEPDQNSEKDCKVDVKRSLFPADDPSFARDSDSQSDEDDSDREDVPLDLSMDALDLRKKKPEEEPEDLSKKNRGITVPKVDVFYPSPHLIAGFTPPFSPYYVPPMYYQERELAEMKERIQKELIRSIRLSSGGVVVQEPPPPSSPEPPPPPPKKVEPAVKMVIKNGVLVPKQKQRRYRTERPFGCEHCSARFTLRSNMERHVKQQHPQLWSQRQRGGGGGGRRSRTETNDPEVRAALAEAIKAKEPKPKDSDLASVSKLLDNASTQTFKQFFSSEDDAAHSDEEGLVASHSEENSGSDEAKSEEGGLTKKKSAYSLAPNRVSCPYCSREFPWSSSLRRHVLTHTGQKPFKCTHCPLLFTTKSNCDRHLLRKHSSGTRPLSSNHDKPFRCEKCPGSRFPSSEALRRHTASRHEGDSHETSACSEQPFKCHLCEASFRERQEALDHLQISHPLDYASLLAKGALDSSSGDEEADDPQPTDNTKFPDYTNRKVMCALCVRRFWSAEDLRRHMRTHTGERPFSCDVCQRRFTLKHSMLRHRKKHDPSSPPPTLLLANHHRDHIPHHQNAAAQTNNNGEETDLICSLLGLRDTSLVDKMIERKDQAALLLGIHSQSQTTSPP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00743025;
90% Identity: iTF_00743025;
80% Identity: -