Gang025727.1
Basic Information
- Insect
- Germaria angustata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963681545.1
- Location
- OY813001.1:14247745-14259342[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1 4.5e+04 -19.2 25.3 65 155 84 177 2 194 0.37 2 4 0.053 2.4e+03 -1.2 5.7 20 79 230 288 224 308 0.63 3 4 1.4e-116 6.5e-112 375.0 25.6 1 299 342 638 342 639 0.93 4 4 0.07 3.1e+03 -1.6 3.7 220 245 667 692 642 713 0.47
Sequence Information
- Coding Sequence
- ATGTCAGTGGAACAAAAATTAACTGATAAAAACGGTGTGGCtacaaccacaacaacaaagGGCACAAGTTCGAATTCgataaaatctaataaaaagaaccaaaacaaaagcaacaacaacagcaataatagtAGTGCTAATAAGAAATTCATGAAAAAGGCattgaaaatgtcaaaaaataaaaaacatgcaAACATTACTAATGTCAACAACAGTAATACAAatagcagcaacaaaaacaacagaaatattAGTAGCAGCAGTAGCACAAGCGGCAACAACAATGTTGAAGTAGCAAATGATGAAATCATCGAAGAGTTATTTGATTTTAGCGATACTGAGTTAAAAGAACTCGacgatttaaaaaatgaagaggaaATTAGCAACAACTCTACTGCAACTTTAGAGCATTTAACTGAACACAGCGATAAATTAGAGGCAAATGAGGAAGTTGTTAGAGAGTCAGAAGTGCAATTGCAAAATATGACCGGtgataacaacaataatcataataatgaaGTCGAAGAGAAGGGGGAACAACAGGTAGAACTACAATTATTTGAATCGTCTTCGCCAATTGATAACATTGATAAACAAACCGAAGATATATCAGGAGAAAATAAATTAGTCACTACGATggcattaacaaaaacaaacaatataattagCACAGAACGAAATGTAGTTAAAAGCGAAATGGATAAAGACCAACAAGAAATAGAGACATTCAAGTCAGAAGAAAATgtggaaattgaaaataacaaagACTCTAGCAATACTATGGTACAAATCTCCAATAGTTCCATTGTTTGTGAACATTCATCGAGCTCTGAAGATGGCAACAATGACAACAAAGTATCAACATCTTCAGACATAAAGACGTCGTCTTTGATTGGAATCAAAGAAGATAGTCGTTGCAAGGAAAACGGTAACAATGATCCaaacaatgatgatgatgataatgagtATGCCGAACCATATGATGAGCTTTTGGTGCAATTCCTTGACGAATCTAATCAGATTGCCGAGGCAAGATTGGCTGCTAGAAGGCATGCAAGAGCGGAAGCACGAGAAATACGCATGCGTGAGCTGGAACGCCAACAAAAAGAACAAGAATCTAATGCAGATCGCGTTTTTGATATGCATTCAACGGTAACTGGGATAACACCATTGTCGCACATGCGTCTGGGGCTCGGAAGTTCACCAGTTACGGGATTATTAAACTCAACAAGGGGCAACTCCATGTCTTCGAGACGCAGCAGCGAAGATTCCTTAGAAGAGGAAGGTCGTAGCTTAAGGGATATACGTCATGAATTAAAAGATGTTGAAGAACGGTTTCGCAAGGCTATGATAGCGAATGCTCAGTTGGATAATGATCGTGCCTCACAAACGTATCAAATACAGTTGCTAAAAGATAAACTGGAGGATATGGAAGAATCGTATTCACAATTACAGCGtgaatgtaaagaaaaaacacGCGAATGTAATGCCTTAAAACGATCGCTGGATAAACTAAGCGAAGAACTTAAACTAGTACAGGGTCAGCTAAATGAGCGTGACACACTGATAGCAGATCAAGGTTTAGTTATTGTTGCAATTGAAAATGAGGATGGCACTGATGCCAAACGTGCTCTAGTCACTGTTGAAAATGCACAATTATTGGGTTCGGTACAAGGATCATTAGATGTCCGACTTAAAAAATTCAGCGATGAGAAACAACAGCTGCAGGCTGAAGTTCAACAGCTGCAGGAACAATTAGACGCATATAAAAGTCAGGGCAAAGGTCGAGGTAAAGGTAATTCTTCAAATGGTCCTGTAGGTTCAGATGACGATGATTATGAAGCTCAACGTGAAGCTAATAAAATCATAAtggattataaatataaattacaaaaagctGAACAAGAAATTGCTAGTCTTCAATCAAGTTTAGCACGCTCTGAAACACAAGTTATACGCTACAAAAGTACAGCTGAAGCTGCCGAAAAGGCTGAAGCAGAACTTAAAATCGAAAGAAGAAAATTGCAAAGAGAGAATCGCGAGGCAATGGAAAAGCTTGAAGAGTTAGAAACATCAAATAATCATCTTCTGAAGCGTTTGGACAAATTAAAGAATGCCAAAAGTGCTTTGCTAAAGGATCTCTGA
- Protein Sequence
- MSVEQKLTDKNGVATTTTTKGTSSNSIKSNKKNQNKSNNNSNNSSANKKFMKKALKMSKNKKHANITNVNNSNTNSSNKNNRNISSSSSTSGNNNVEVANDEIIEELFDFSDTELKELDDLKNEEEISNNSTATLEHLTEHSDKLEANEEVVRESEVQLQNMTGDNNNNHNNEVEEKGEQQVELQLFESSSPIDNIDKQTEDISGENKLVTTMALTKTNNIISTERNVVKSEMDKDQQEIETFKSEENVEIENNKDSSNTMVQISNSSIVCEHSSSSEDGNNDNKVSTSSDIKTSSLIGIKEDSRCKENGNNDPNNDDDDNEYAEPYDELLVQFLDESNQIAEARLAARRHARAEAREIRMRELERQQKEQESNADRVFDMHSTVTGITPLSHMRLGLGSSPVTGLLNSTRGNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNDRASQTYQIQLLKDKLEDMEESYSQLQRECKEKTRECNALKRSLDKLSEELKLVQGQLNERDTLIADQGLVIVAIENEDGTDAKRALVTVENAQLLGSVQGSLDVRLKKFSDEKQQLQAEVQQLQEQLDAYKSQGKGRGKGNSSNGPVGSDDDDYEAQREANKIIMDYKYKLQKAEQEIASLQSSLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMEKLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01399449;
- 90% Identity
- -
- 80% Identity
- -