Basic Information

Insect: Geotrupes spiniger
Gene Symbol: -
Assembly: GCA_959613385.1
Location: OY390738.1:27894905-27901571[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0028 0.2 13.2 5.5 1 23 407 429 407 429 0.96

2 18 2.6e-05 0.0018 19.6 1.2 1 20 435 454 435 457 0.94

3 18 0.00016 0.011 17.1 1.4 1 23 463 485 463 485 0.98

4 18 0.00013 0.0091 17.4 3.6 1 21 491 511 491 513 0.95

5 18 5.3e-05 0.0037 18.7 4.6 1 23 519 541 519 541 0.99

6 18 5.2e-05 0.0037 18.7 5.3 1 23 547 569 547 569 0.97

7 18 8.4e-06 0.0006 21.2 7.2 1 23 575 597 575 597 0.97

8 18 1.9e-07 1.4e-05 26.3 2.7 1 23 603 625 603 625 0.98

9 18 0.00014 0.01 17.3 6.7 1 23 631 653 631 653 0.97

10 18 2.3e-05 0.0016 19.8 5.5 1 23 659 681 659 681 0.97

11 18 9.3e-07 6.5e-05 24.2 2.8 1 23 687 709 687 709 0.98

12 18 4.2e-06 0.0003 22.1 6.1 1 23 715 737 715 737 0.98

13 18 5.6e-05 0.0039 18.6 9.1 1 23 743 765 743 765 0.98

14 18 3.4e-05 0.0024 19.3 7.7 1 23 771 793 771 793 0.98

15 18 2.2e-05 0.0015 19.9 7.1 1 23 799 821 799 821 0.97

16 18 0.00019 0.013 16.9 0.4 1 23 827 849 827 849 0.98

17 18 0.18 12 7.6 5.0 1 23 859 881 859 881 0.98

18 18 1.4e-06 0.0001 23.6 0.3 1 23 887 909 887 909 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0028	0.2	13.2	5.5	1	23	407	429	407	429	0.96
2	18	2.6e-05	0.0018	19.6	1.2	1	20	435	454	435	457	0.94
3	18	0.00016	0.011	17.1	1.4	1	23	463	485	463	485	0.98
4	18	0.00013	0.0091	17.4	3.6	1	21	491	511	491	513	0.95
5	18	5.3e-05	0.0037	18.7	4.6	1	23	519	541	519	541	0.99
6	18	5.2e-05	0.0037	18.7	5.3	1	23	547	569	547	569	0.97
7	18	8.4e-06	0.0006	21.2	7.2	1	23	575	597	575	597	0.97
8	18	1.9e-07	1.4e-05	26.3	2.7	1	23	603	625	603	625	0.98
9	18	0.00014	0.01	17.3	6.7	1	23	631	653	631	653	0.97
10	18	2.3e-05	0.0016	19.8	5.5	1	23	659	681	659	681	0.97
11	18	9.3e-07	6.5e-05	24.2	2.8	1	23	687	709	687	709	0.98
12	18	4.2e-06	0.0003	22.1	6.1	1	23	715	737	715	737	0.98
13	18	5.6e-05	0.0039	18.6	9.1	1	23	743	765	743	765	0.98
14	18	3.4e-05	0.0024	19.3	7.7	1	23	771	793	771	793	0.98
15	18	2.2e-05	0.0015	19.9	7.1	1	23	799	821	799	821	0.97
16	18	0.00019	0.013	16.9	0.4	1	23	827	849	827	849	0.98
17	18	0.18	12	7.6	5.0	1	23	859	881	859	881	0.98
18	18	1.4e-06	0.0001	23.6	0.3	1	23	887	909	887	909	0.97

Sequence Information

Coding Sequence: ATGAATTCTGATGATCAAGATCCCCTTCATGGGGCGCACACATCAACAGAACAAACAGAAGGCACAACGCAAAGACCACCACCAACAACCTCGGTACCAACGGACCTGAGAGTAAATACAACTGCACTTAATGCAGTAGCTTTAAGTAGTGTTGCAAAGTATTgggttttaacaaatttattacctGGACCAATACCTCAAGTGTACAGCCTTCCAGGATCAACGAGGACCGATAATCAAGGAAAAATGTCACAGGAATCAATGTTGGGACAGCACGCAAACCTCATAAATGCAGATTCCCTTCTGCTTCAACAGCACCAACAAATACCAGTCAGTATAGCCACATCACAGTCTGTCACAAATTTAACCATACCCGCTGGCGCAATGCATCTCGAAAATCCATCACAAAATCACAACCAAATGTCCAACCATCAGCAGCAGTCCGAAGCACAAACAATGGTAACGCAGTCACAATCGCAGATGTCTCATTCGCAAATTAACAACCAACAGAATCCTAACAACCAAAACATGGTGCAAGTGCAAGTGCAGGATAATTTAGTGTCAGTTATCGAAGACACGAAAGATCACAAAGATTTGATAGCTTCGCAGTTGGTGCAGGCTCAAATGCAGCTAAATGAAAATCAACAGATGAATCACCAAAATTTGACTGTTCAGCAGCTACATCACTTACAAGTGCAACAGGTTTTGGATAACGTTGTCAGAATGGAAACGGGCGTTGATAACAATCAAAGTCAAAATGCGGTTCAGGACGCTATGGCGGACATCAAAGATGAAAAGAACcttcaaaattgtacaaagttGATGGGGACGCAGTTTGGTTTGCAAGACCTCAAAGGTAATTTGATGGATGTGCGAACGGCTGATGGGAGTATTGTGAAAATTTCAACGAGCATACAGGAACAAGATCTGGCCAAGACGCTGGGCGTTGAAGTCGTTCAAAACATGTACAAAGTGAACGTCGATGACATTAATCAATTGCTCGCATATCATGAAGTTTTTGGAAAGCTTCAAAGTGAAATATCCACTCCATCAAGTATCGTGCCTAACCCTTCCAACCATGTTAACTTACAACAAACTGCCAATAATTTATCGAACAATGTTGCTTTATTAACTCCGAAAACGTTGGTCGAAAACGATCAGGAACCATCCACGAGCACGATATCAACTGATAGTCCCCCGGCGATCATAACAGGAAATCATTGTTGCGATTTATGTGGGAAAATGTTTCAGTTTCGATATCAACTGATTGTTCACAGAAGATACCACACAGAGAGGAAACCGTTTACATGTCAGGTTTGTGGTAAAGCGTTCACAAATGCTGCGGAACTGACTCGTCACGGAAAGTGTCACTTGGGCGGTAGTATGTTCACATGTTCCGTGTGCTTTCACGTGTTTGCTAATGGTGCTTCGTTGGAACGACACATGAAGCGGCATTCCACTGAGAAACCTTATAATTGTACGATATGCGGCAAAGCGTTTGCACGCAAGGAGCATCTAGATAATCACACAAGGTGTCACACTGGTGAAACACCCTATCGTTGTCAATACTGTGCGAAAACGTTCACGAGGAAAGAACACATGGTGAATCACGTCAGGAAGCACACAGGGGAGACTCCTCATCGATGTGACATCTGCAAGAAATCTTTCACTAGAAAGGAACATTTTATGAACCATGTCATGTGGCATACTGGAGAAACTCCCCATCATTGCACGATATGTGGGAAAAAATACACACGAAAGGAACACTTGGCGAATCACATGCGGTCACATACTAATGACACTCCATTCAGGTGTGAAATTTGTGGTAAATCTTTCACCAGGAAAGAGCACTTTACGAATCACATCATGTGGCATACTGGTGAAACCCCCCATCGATGTGATTTCTGTTCAAAAACATTCACACGCaaagaacatttattaaatcacGTTCGACAACATACTGGAGAATCTCCGCATCGTTGTGCATACTGTTCTAAATCGTTCACTAGAAAAGAGCACTTAATTAACCACGTGCGTCAGCATACAGGCGAAACGCCATTCAGGTGTAGTTATTGTCCGAAAGCATTCACCAGAAAAGATCATTTAGTAAATCACGTGCGACAGCATACAGGCGAATCACCGCATAAATGTCCGATGTGCACGAAGTCATTCACAAGGAAGGAACATCTTACCAATCATGTTAGACAGCATACCGGTGAATCACCACACAGGTGCCACTTTTGCTCTAAGTCGTTTACGAGGAAGGAGCATTTAACGAATCATGTTCGAATACACACAGGGGAGTCACCTCACCGATGCGAATTTTGCCAGAAAACTTTCACAAGAAAAGAACATTTGACTAATCATCTGCGACAACACACTGGCGAAACACCACATTGTTGCAATGTTTGTTCCAAACCATTCACCAGAAAggaacatttaataaatcatatgcGATCACATACTGGAGAGCGTCCCTTCTCCTGTGGAGAATGTGGAAAATCATTTCCGTTGAAGGGAAACCTATTATTTCATCAAAGATCACACAATAAAGGTGCTGGTGCAGATCGACCTTTTAGATGTGATCTGTGCGAGAAAGATTTCATGTGCAAGGGTCATTTGGTGTCGCATAGAAGATCACACAGCGGTGAACGACCATTTGCTTGCCCAGATTGTGGTAGAACGTTTGTGGAAAAAGGTAACATGTTAAGGCATCTGAGAAAACATGTCACTGAAAATGGGCAAAATCAAGCCGCAGCGCAAAATATGAATAACCAGGTTAATCAGGTATCCCAACCACCAACAACAACCAGTACAGTACAAACGACAGCTGCTAACATACAGATACCACAAGTCAGCCAGGCACAAACACTCACAAGTCCTGTGTCTTCGGGAAATATCGTGCCTCAATCACAGCATTTATCCCTACATCAGCAACCCAATCATGCTGTGGTTGTACCTACCGCTAATGGCAATGTTCTCGCTTCTTATTGA
Protein Sequence: MNSDDQDPLHGAHTSTEQTEGTTQRPPPTTSVPTDLRVNTTALNAVALSSVAKYWVLTNLLPGPIPQVYSLPGSTRTDNQGKMSQESMLGQHANLINADSLLLQQHQQIPVSIATSQSVTNLTIPAGAMHLENPSQNHNQMSNHQQQSEAQTMVTQSQSQMSHSQINNQQNPNNQNMVQVQVQDNLVSVIEDTKDHKDLIASQLVQAQMQLNENQQMNHQNLTVQQLHHLQVQQVLDNVVRMETGVDNNQSQNAVQDAMADIKDEKNLQNCTKLMGTQFGLQDLKGNLMDVRTADGSIVKISTSIQEQDLAKTLGVEVVQNMYKVNVDDINQLLAYHEVFGKLQSEISTPSSIVPNPSNHVNLQQTANNLSNNVALLTPKTLVENDQEPSTSTISTDSPPAIITGNHCCDLCGKMFQFRYQLIVHRRYHTERKPFTCQVCGKAFTNAAELTRHGKCHLGGSMFTCSVCFHVFANGASLERHMKRHSTEKPYNCTICGKAFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCAYCSKSFTRKEHLINHVRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCPMCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEHLINHMRSHTGERPFSCGECGKSFPLKGNLLFHQRSHNKGAGADRPFRCDLCEKDFMCKGHLVSHRRSHSGERPFACPDCGRTFVEKGNMLRHLRKHVTENGQNQAAAQNMNNQVNQVSQPPTTTSTVQTTAANIQIPQVSQAQTLTSPVSSGNIVPQSQHLSLHQQPNHAVVVPTANGNVLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00466596; iTF_01258281; iTF_00465172; iTF_00956454; iTF_00627440; iTF_01121010; iTF_01499043; iTF_01123936; iTF_00434313; iTF_00070590; iTF_00308222;
90% Identity: -
80% Identity: -