Basic Information

Insect: Oryctes borbonicus
Gene Symbol: -
Assembly: GCA_902654985.1
Location: LR736888.1:1466468-1475741[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4.7e-05 0.0039 17.6 2.5 1 23 426 448 426 448 0.97

2 18 1.1e-05 0.00089 19.6 1.2 1 20 454 473 454 476 0.94

3 18 5.9e-06 0.00049 20.4 1.3 1 23 482 504 482 504 0.98

4 18 3.9e-05 0.0033 17.8 4.4 1 21 510 530 510 532 0.95

5 18 2.2e-05 0.0018 18.6 4.6 1 23 538 560 538 560 0.99

6 18 2.1e-05 0.0017 18.7 5.3 1 23 566 588 566 588 0.97

7 18 3.5e-06 0.00029 21.1 7.2 1 23 594 616 594 616 0.97

8 18 8.1e-08 6.8e-06 26.3 2.7 1 23 622 644 622 644 0.98

9 18 5.9e-05 0.005 17.2 6.7 1 23 650 672 650 672 0.97

10 18 9.6e-06 0.00081 19.7 5.5 1 23 678 700 678 700 0.97

11 18 3.8e-07 3.2e-05 24.1 2.8 1 23 706 728 706 728 0.98

12 18 1.8e-06 0.00015 22.1 6.1 1 23 734 756 734 756 0.98

13 18 2.3e-05 0.0019 18.5 9.1 1 23 762 784 762 784 0.98

14 18 1.4e-05 0.0012 19.2 7.7 1 23 790 812 790 812 0.98

15 18 1.5e-05 0.0013 19.1 7.1 1 23 818 840 818 840 0.97

16 18 7.7e-05 0.0065 16.9 0.4 1 23 846 868 846 868 0.98

17 18 0.072 6.1 7.5 5.0 1 23 878 900 878 900 0.98

18 18 4e-08 3.3e-06 27.2 0.4 1 23 906 928 906 928 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4.7e-05	0.0039	17.6	2.5	1	23	426	448	426	448	0.97
2	18	1.1e-05	0.00089	19.6	1.2	1	20	454	473	454	476	0.94
3	18	5.9e-06	0.00049	20.4	1.3	1	23	482	504	482	504	0.98
4	18	3.9e-05	0.0033	17.8	4.4	1	21	510	530	510	532	0.95
5	18	2.2e-05	0.0018	18.6	4.6	1	23	538	560	538	560	0.99
6	18	2.1e-05	0.0017	18.7	5.3	1	23	566	588	566	588	0.97
7	18	3.5e-06	0.00029	21.1	7.2	1	23	594	616	594	616	0.97
8	18	8.1e-08	6.8e-06	26.3	2.7	1	23	622	644	622	644	0.98
9	18	5.9e-05	0.005	17.2	6.7	1	23	650	672	650	672	0.97
10	18	9.6e-06	0.00081	19.7	5.5	1	23	678	700	678	700	0.97
11	18	3.8e-07	3.2e-05	24.1	2.8	1	23	706	728	706	728	0.98
12	18	1.8e-06	0.00015	22.1	6.1	1	23	734	756	734	756	0.98
13	18	2.3e-05	0.0019	18.5	9.1	1	23	762	784	762	784	0.98
14	18	1.4e-05	0.0012	19.2	7.7	1	23	790	812	790	812	0.98
15	18	1.5e-05	0.0013	19.1	7.1	1	23	818	840	818	840	0.97
16	18	7.7e-05	0.0065	16.9	0.4	1	23	846	868	846	868	0.98
17	18	0.072	6.1	7.5	5.0	1	23	878	900	878	900	0.98
18	18	4e-08	3.3e-06	27.2	0.4	1	23	906	928	906	928	0.97

Sequence Information

Coding Sequence: ATGAACTCTGATAATCAAAACCCCCTTGGTGGGGCGCATACTACTTCTGAACAGACTGAAGGAAGCACTCAGAGACCACCACCCACTACTTCAGTACCAACAGACTTACGGGTGAATACAACTGCCTTAAATGCTGTGGCATTAAGTAGTGTTGCAAAATACTGGGTACTGACAAATCTACTACCTGGTCCCATTCCACAAGTGTACAGTTTACCAGGTTCTGCTAGGCCTGATAATCAAGGAAAAATTTCACAGGAAGCCATGATGAGCCAACATGCGAATCTCATAAACGCAGACTCTCTCCTTCTACAGCAGCATCAGCAAATACCAGTGAGCATAGCAACATCACAATCAGTTACCAATCTTGCTATACCTGCAAGTGCCATGCATATAGATACCGCTTCACAAAATCATAGTCAGCTGTCAAATCATCCTCAATCGGAAGCCCAAACTATGGCAACGCAATCTCAATCACAATTATCTCATTCTTCGCAAATGTCCGGTCAAAATCAATCTCAACAGCAAcagcagcaacaacaacagcagcagcagcagcaacaacaacagcagcagcagcaatcacaaaataatcaaaatatggTGCAGGTGCAAGTTCAAGATAATTTGGTCTCAGTAATTGAGGATAGTAAAGATCACAAGGAATTGATTACATCACAGCTAGCACAGAATCAAATGCACATGAACGACGGTCAGCAAATAAATCATCAAAACTTAACAGTACAACAGTTACATCATCTTCAAGTGCAGCAAGTATTGGATAATGTCGTAAGAATGGAGAATTCAGAACAGaatcaaaattcaaatgaagACCAGTTAAATGAAAATCTGATTATTAAAGACGAAAAGAACTTACAGAATTGTACTAAGTTATTAGGGGCGCAATTTGGTTTGCAAGACATCAAAGGGAACCTAATGGACGTTAGAACAGCTGATGGAAGCATTGTCAAGATATCGGCTGGTATACAGGAACAGGATTTGGCGAAGAGCCTTGGTGTTGAGGTCGTTCAGAACATGTATAAAGTAAATGTGGATGATATTAATCAGTTATTAGCTTATCATGAAGTCTTTGGTAAATTACAAAGTGAAATAACTACTCCTGCAGGTATAGTGTCTACTAATAATGCAAGTATTCAGCAAGCGGGTAACTTATCGAGTAATATTGCCATTGTAACACCTAAGACTCTTGTAGAAAATGATCAAGAACCAATGAGCAGTTCAATAGCAACTGATACTCCTCCTGTGATTGCGGCCACTCATGTCTGTGATTTATGcggaaaaatgtttcaatttaaatatcaattaattgtTCATAGGAGATATCACACGGAGAGGAAACCTTTTACTTGCCAAGTTTGCGGAAAAGCTTTTACCAATGCTGCCGAATTAACTAGGCATGGAAAATGTCATTTAGGTGGTAGCATGTTTACATGTTCGGTATGTTTTCATGTGTTCGCTAACGCAGCTTCATTAGAAAGGCATATGAAACGACATTCTACTGAAAAACCTTACAATTGTACCATATGTGGAAAGTCATTTGCTAGAAAAGAACATCTAGACAACCATACAAGGTGTCATACTGGAGAAACACCATACAGATGTCAGTATTGTGCAAAAACCTTTACTCGAAAAGAGCATATGGTAAACCATGTTAGGAAGCATACAGGGGAAACCCCGCATCGTtgtgaaatatgtaaaaagtcCTTTACGCGGAAGGAACATTTTATGAACCACGTAATGTGGCATACCGGTGAAACTCCGCATCATTGCACGATTTGCGGGAAAAAATATACACGTAAAGAGCATTTAGCGAACCATATGCGTTCGCATACGAATGATACACCTTTTAGATGTGAAATTTGCGGGAAATCATTTAcaagaaaagaacattttacGAATCACATAATGTGGCATACGGGGGAAACCCCGCATAGATGtgatttttgttcaaaaacgTTTACAAGAAAGGAACATTTGCTTAACCACGTTAGGCAGCATACCGGCGAGTCACCGCATCGATGTGCTTATTGTTCAAAGTCGTTTACTAGAAAAGAACATTTGATTAATCACGTTAGGCAGCACACTGGAGAAACGCCATTTAGatGCAGTTATTGCCCGAAAGCATTTACTAGAAAGGACCACTTAGTGAACCACGTACGTCAGCATACCGGTGAATCACCTCATAAATGTCCCATGTGTACGAAATCTTTTACTAGAAAGGAACACCTAACTAATCACGTGAGACAACACACAGGGGAATCGCCACACCGTTGTCATTTTTGTTCGAAATCGTTTACGAGAAAAGAACATCTGACTAATCACGTTAGAATTCATACAGGAGAATCTCCACATAGGTGTGAGTTCTGTCAGAAAACATTCACGAGAAAGGAACATCTTACGAATCATCTTAGGCAACATACAGgtgaAACTCCACACTGTTGTAATGTATGTTCTAAACCTTTCACTAGGAAAGAACATCTCGTGAATCATATGCGTTCTCATACAGGAGAAAGACCATTTTCTTGTGGTGAATGTGGGAAATCTTTTCCGCTTAAGGGAAATCTATTATTCCATCAAAGATCACACAATAAAGGAGCTGCTGCAGATAGACCTTTTCGATGTGATCTCTGCGAGAAGGATTTCATGTGTAAAGGTCACTTAGTTTCTCATAGGAGGTCACACAGCGGCGAGCGGCCATTCGCTTGTCCAGATTGTGGAAAAACCTTCGTGGAAAAGGGTAACATGATGCGTCACATGAGGAAGCACGCTACAGAGAACGGTCAAAACCAAGCTAACGGTGCATCGAATATAAATaatcagataaataataatcaagtaCCACAAACTCAAGCATCCAGCACGAGTACAGTGCAAACTACAGCGGCGAATTTACAAATTCCACAGGTTAGCCAAGCCCAAACTTTAGCGAATTCCGTATCGTCAGGTAATGTAGTACCACCATCACAACATTTACCCATACACCAACAAAATAATCATTCTGTAGTCGTGCCTACAGCTAATGGTAACGTTCTAGCTACTTATTGA
Protein Sequence: MNSDNQNPLGGAHTTSEQTEGSTQRPPPTTSVPTDLRVNTTALNAVALSSVAKYWVLTNLLPGPIPQVYSLPGSARPDNQGKISQEAMMSQHANLINADSLLLQQHQQIPVSIATSQSVTNLAIPASAMHIDTASQNHSQLSNHPQSEAQTMATQSQSQLSHSSQMSGQNQSQQQQQQQQQQQQQQQQQQQQQSQNNQNMVQVQVQDNLVSVIEDSKDHKELITSQLAQNQMHMNDGQQINHQNLTVQQLHHLQVQQVLDNVVRMENSEQNQNSNEDQLNENLIIKDEKNLQNCTKLLGAQFGLQDIKGNLMDVRTADGSIVKISAGIQEQDLAKSLGVEVVQNMYKVNVDDINQLLAYHEVFGKLQSEITTPAGIVSTNNASIQQAGNLSSNIAIVTPKTLVENDQEPMSSSIATDTPPVIAATHVCDLCGKMFQFKYQLIVHRRYHTERKPFTCQVCGKAFTNAAELTRHGKCHLGGSMFTCSVCFHVFANAASLERHMKRHSTEKPYNCTICGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCAYCSKSFTRKEHLINHVRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCPMCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEHLVNHMRSHTGERPFSCGECGKSFPLKGNLLFHQRSHNKGAAADRPFRCDLCEKDFMCKGHLVSHRRSHSGERPFACPDCGKTFVEKGNMMRHMRKHATENGQNQANGASNINNQINNNQVPQTQASSTSTVQTTAANLQIPQVSQAQTLANSVSSGNVVPPSQHLPIHQQNNHSVVVPTANGNVLATY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00741037;
90% Identity: iTF_01123936;
80% Identity: -