Basic Information

Insect: Dorcus hopei
Gene Symbol: -
Assembly: GCA_033060865.1
Location: CM065421.1:26459959-26464508[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00026 0.028 16.3 2.4 1 23 403 425 403 425 0.96

2 18 5e-05 0.0056 18.6 0.8 1 20 431 450 431 453 0.94

3 18 1.3e-05 0.0014 20.4 1.3 1 23 459 481 459 481 0.98

4 18 0.0005 0.055 15.4 4.4 1 21 487 507 487 509 0.95

5 18 4.7e-05 0.0052 18.6 4.6 1 23 515 537 515 537 0.99

6 18 4.5e-05 0.005 18.7 5.3 1 23 543 565 543 565 0.97

7 18 7.6e-06 0.00084 21.1 7.2 1 23 571 593 571 593 0.97

8 18 1.7e-07 1.9e-05 26.3 2.7 1 23 599 621 599 621 0.98

9 18 0.00013 0.014 17.3 6.7 1 23 627 649 627 649 0.97

10 18 2.1e-05 0.0023 19.8 5.5 1 23 655 677 655 677 0.97

11 18 7.8e-07 8.6e-05 24.3 3.0 1 23 683 705 683 705 0.98

12 18 3.8e-06 0.00042 22.1 6.1 1 23 711 733 711 733 0.98

13 18 5e-05 0.0055 18.6 9.1 1 23 739 761 739 761 0.98

14 18 3e-05 0.0033 19.3 7.7 1 23 767 789 767 789 0.98

15 18 2e-05 0.0022 19.8 7.1 1 23 795 817 795 817 0.97

16 18 0.0001 0.011 17.6 0.7 1 23 823 845 823 845 0.98

17 18 0.046 5.1 9.2 5.1 1 23 855 877 855 877 0.98

18 18 1.3e-06 0.00014 23.6 0.3 1 23 883 905 883 905 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00026	0.028	16.3	2.4	1	23	403	425	403	425	0.96
2	18	5e-05	0.0056	18.6	0.8	1	20	431	450	431	453	0.94
3	18	1.3e-05	0.0014	20.4	1.3	1	23	459	481	459	481	0.98
4	18	0.0005	0.055	15.4	4.4	1	21	487	507	487	509	0.95
5	18	4.7e-05	0.0052	18.6	4.6	1	23	515	537	515	537	0.99
6	18	4.5e-05	0.005	18.7	5.3	1	23	543	565	543	565	0.97
7	18	7.6e-06	0.00084	21.1	7.2	1	23	571	593	571	593	0.97
8	18	1.7e-07	1.9e-05	26.3	2.7	1	23	599	621	599	621	0.98
9	18	0.00013	0.014	17.3	6.7	1	23	627	649	627	649	0.97
10	18	2.1e-05	0.0023	19.8	5.5	1	23	655	677	655	677	0.97
11	18	7.8e-07	8.6e-05	24.3	3.0	1	23	683	705	683	705	0.98
12	18	3.8e-06	0.00042	22.1	6.1	1	23	711	733	711	733	0.98
13	18	5e-05	0.0055	18.6	9.1	1	23	739	761	739	761	0.98
14	18	3e-05	0.0033	19.3	7.7	1	23	767	789	767	789	0.98
15	18	2e-05	0.0022	19.8	7.1	1	23	795	817	795	817	0.97
16	18	0.0001	0.011	17.6	0.7	1	23	823	845	823	845	0.98
17	18	0.046	5.1	9.2	5.1	1	23	855	877	855	877	0.98
18	18	1.3e-06	0.00014	23.6	0.3	1	23	883	905	883	905	0.97

Sequence Information

Coding Sequence: ATGAATTCTGATGATCAAGATCCCCTTGCTGGGGCTGAACAGCCAGAAGGTACTACGCAGAGACCACCGCCAACAACTTCAGTTCCTACAGATTTGAGAGTAAACACGACAGCTTTGAACGCAGTGGCTTTAAGTAGTGTTGCCAAATATTGGGTTTTAACAAATTTACTGCCCGGACCAATACCTCAAGTTTATAGCCTCCCAGGATCAACGAGAAGTGACGGTCAGGGCAAATTACCACAGGAAACAATGTTAGGACAACATGCAAATCTCATCAATGCAGATTCCCTTCTCTTGCAACAACATGGTCAACAAATCCCCGTTAGCATAGCAACCTCACAGTCTCTCACAAATTTGGCCATCCCTGCAAGTGCAATGCATTTAGAAAATACATCACAAAATCACAATCACATGACCAACCACCAACAGTCGGAATCGCAGACGATGGTGACCCAGTCACAGTCACAACTTGCCCATGCTCACATGAACAGTCAACAAAATCAAGGCAGTCAAAACATGGTGCAGGTTCAAGTGCAGGACAATTTAGTGTCTGTCATCGAGGATAGCAAAGATCATAAAGATTTGATTTCATCTCAGCTTGCGCAAGCGCAGATGCAGTTGAATGACAACCAGCAATTGAATCACCAAAATTTAACGGTACAGCACTTACATCAGTTACAAGTCCAGCAAGTTTTAGACAATGTTGTGCGTATGGAAAGCGGTGTCGATGGCAATCAAAACCAAAACAATAACGAGCAAGATCCCCTCGGCGATAACATGATCATAAAAGACGAAAAGAATCTCCAGAATTGCACTAAATTACTCGGCACGCAGTTTGGCCTGCAAGATCTGAAAGGCAACTTGATGGATGTGAGAACAGCAGATGGCAGCATTGTAAAAATTTCAGCCGGCATACAAGAACAAGATCTGGCGAAAACCCTTGGTGTAGAGGTCGTCCAAAATATGTATAAAGTTAATGTGGATGATATCAATCAATTGTTGGCATACCACGAAGTTTTCGGAAAGTTGCAGAGTGAAATTAATGTTACTCCTACTAGCATTGTTCAAAATACTGGTGGCAGTGTGAATTTGCAACAGGGTAACAATATTGCGATTGTCACGCCGAAAAGTGTAGGTGAAAATGAACAAGAACCTTCAACTAGTTCTTTGAATACGGACAGTCCACCTACGATTTTGACTGCTAATCATATTTGTGATTTATGTGGGAAGATGTTCCAGTTTCGATATCAGTTGATTGTACATAGAAggtatcACATTGAAAGGAAGCCGTTTACATGTCAAGTTTGTGGCAAAGCATTTGTCAATGCGGCAGAGTTAACTCGCCATGGAAAATGCCACCTAGGTGGTAGCATGTTCACATGTTCCGTGTGTTTCCATGTCTTTGCGAATGCAGCATCCTTAGAGAGACATATGAAAAGACATTCGACGGAAAAACCGTACAACTGTACGACATGTGGTAAAGCATTTGCAAGGAAGGAGCATTTAGATAATCACACACGTTGCCATACAGGGGAAACACCGTACCGTTGCCAGTATTGTGCCAAGACTTTCACCAGAAAAGAACACATGGTGAACCATGTGAGGAAGCACACGGGTGAAACTCCTCATCGCTGCGAGATTTGTAAAAAGTCTTTTACCAGGAAAGAACATTTTATGAATCACGTCATGTGGCATACCGGAGAGACGCCACATCATTGTACGATTTGTGGGAAAAAATACACTCGTAAAGAGCATCTGGCGAACCACATGCGTTCACACACCAACGACACTCCCTTTAGATGTGAAATATGTGGTAAGTCTTTTACGAGGAAAGAACATTTTACGAATCACATTATGTGGCATACCGGTGAAACACCACATAGGTGTGACTTTTGCTCAAAGACTTTTACACGCAAGGAACACCTTCTGAATCACGTCCGACAACACACTGGGGAATCCCCGCATCGTTGTGCTTATTGTTCGAAATCGTTCACTCGTAAAGAACACCTTATCAATCACGTAAGGCAACACACTGGTGAGACACCGTTTCGTTGCACCTACTGTCCAAAGGCGTTCACAAGAAAAGATCATTTGGTTAATCACGTAAGACAACATACCGGCGAATCCCCCCATAAGTGTCCTATGTGTACAAAGTCTTTCACACGAAAGGAACACCTTACTAATCACGTTCGACAACATACGGGCGAGTCACCGCATCGCTGTCATTTTTGTTCCAAGTCTTTCACTAGAAAAGAACATCTAACTAACCACGTGCGAATACACACGGGAGAATCTCCGCACAGATGCGAATTCTGTCAGAAAACGTTTACCCGTAAAGAACACCTGACAAACCACCTTCGACAGCATACCGGCGAAACACCGCATTGTTGCAACGTGTGTTCAAAACCGTTCACTAGAAAGGAGCACTTAATAAATCACATGCGTTCCCACACAGGAGAAAGGCCTTTCTCATGTTCAGAGTGTGGCAAATCTTTCCCATTGAAAGGCAACTTGCTGTTTCATCAGAGGTCTCACAATAAGGGTGCAGGTGCAGACCGTCCTTTCCGTTGTGATCTCTGTGACAAGGATTTCATGTGCAAAGGACATTTGGTATCGCATAGACGGTCACACAGTGGAGAACGTCCTTTTGCTTGTCCGGACTGTGGAAGGACATTCGTAGAGAAAGGCAATATGCTTCGACATCTGAGGAAACATACCTCGGAGAACGGGCAGAATCAAATAAACGCCGTGCTGAAAATGAACCAGGTGAATGCAACCACGCAAAACATCAATAACCAGGTGACGCAGTCTCAAACTGTTACTAGTACAGTACAAACAACTGCTGCCAATTTACAAATACCACAGGTCAGTCAAGCACAGTCTTTGGCCAGTCCTGTCTCCACTGGGAACATTGTGCAACAGTCTCAGCATATGTCGTTGCATCAACCTACGAATCATCCTGTAGTCGTGCCTACTGCTAACGGTAATGTCCTTGCTACTTATTGA
Protein Sequence: MNSDDQDPLAGAEQPEGTTQRPPPTTSVPTDLRVNTTALNAVALSSVAKYWVLTNLLPGPIPQVYSLPGSTRSDGQGKLPQETMLGQHANLINADSLLLQQHGQQIPVSIATSQSLTNLAIPASAMHLENTSQNHNHMTNHQQSESQTMVTQSQSQLAHAHMNSQQNQGSQNMVQVQVQDNLVSVIEDSKDHKDLISSQLAQAQMQLNDNQQLNHQNLTVQHLHQLQVQQVLDNVVRMESGVDGNQNQNNNEQDPLGDNMIIKDEKNLQNCTKLLGTQFGLQDLKGNLMDVRTADGSIVKISAGIQEQDLAKTLGVEVVQNMYKVNVDDINQLLAYHEVFGKLQSEINVTPTSIVQNTGGSVNLQQGNNIAIVTPKSVGENEQEPSTSSLNTDSPPTILTANHICDLCGKMFQFRYQLIVHRRYHIERKPFTCQVCGKAFVNAAELTRHGKCHLGGSMFTCSVCFHVFANAASLERHMKRHSTEKPYNCTTCGKAFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCAYCSKSFTRKEHLINHVRQHTGETPFRCTYCPKAFTRKDHLVNHVRQHTGESPHKCPMCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEHLINHMRSHTGERPFSCSECGKSFPLKGNLLFHQRSHNKGAGADRPFRCDLCDKDFMCKGHLVSHRRSHSGERPFACPDCGRTFVEKGNMLRHLRKHTSENGQNQINAVLKMNQVNATTQNINNQVTQSQTVTSTVQTTAANLQIPQVSQAQSLASPVSTGNIVQQSQHMSLHQPTNHPVVVPTANGNVLATY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00741037;
90% Identity: iTF_00466596; iTF_01258281;
80% Identity: -