Basic Information

Insect: Gandaritis pyraliata
Gene Symbol: PRDM7
Assembly: GCA_947859175.1
Location: OX401858.1:1708882-1715213[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.01 1.1e+02 3.3 0.1 22 46 469 493 457 499 0.79

2 12 0.0044 46 4.4 0.0 21 44 496 519 492 524 0.89

3 12 0.00065 6.8 7.1 0.1 21 44 524 547 519 551 0.90

4 12 0.0007 7.2 7.0 0.1 21 44 552 575 548 579 0.90

5 12 0.0007 7.3 7.0 0.1 21 44 580 603 576 607 0.90

6 12 6.8e-05 0.71 10.2 0.1 21 46 608 633 604 639 0.87

7 12 0.0016 17 5.8 0.1 21 45 636 660 632 667 0.87

8 12 0.0021 21 5.5 0.0 22 46 665 689 660 695 0.87

9 12 0.014 1.4e+02 2.9 0.0 21 44 692 715 688 719 0.89

10 12 0.00099 10 6.5 0.0 20 46 719 745 709 751 0.82

11 12 0.0052 54 4.2 0.0 21 45 748 772 744 779 0.85

12 12 0.021 2.2e+02 2.3 0.0 20 48 775 803 764 807 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.01	1.1e+02	3.3	0.1	22	46	469	493	457	499	0.79
2	12	0.0044	46	4.4	0.0	21	44	496	519	492	524	0.89
3	12	0.00065	6.8	7.1	0.1	21	44	524	547	519	551	0.90
4	12	0.0007	7.2	7.0	0.1	21	44	552	575	548	579	0.90
5	12	0.0007	7.3	7.0	0.1	21	44	580	603	576	607	0.90
6	12	6.8e-05	0.71	10.2	0.1	21	46	608	633	604	639	0.87
7	12	0.0016	17	5.8	0.1	21	45	636	660	632	667	0.87
8	12	0.0021	21	5.5	0.0	22	46	665	689	660	695	0.87
9	12	0.014	1.4e+02	2.9	0.0	21	44	692	715	688	719	0.89
10	12	0.00099	10	6.5	0.0	20	46	719	745	709	751	0.82
11	12	0.0052	54	4.2	0.0	21	45	748	772	744	779	0.85
12	12	0.021	2.2e+02	2.3	0.0	20	48	775	803	764	807	0.79

Sequence Information

Coding Sequence: ATGTCCCAGCGTAATTTGCGGCACAAGCCGCGGATTAGTTATTACGAGCCAGAAGAACCTGATTTGGACGAGTATGTGTTTTGCGAAAAATGCGGAGACTACGTTTACGAGTACTGCGCCATTCATGGACCTTTACTGGTCATACCAGATGATAAGGTTCCCGCCAAACCCAATGTCCCACCGTACGTGCCTCGCGCGGCGCTAACTATTCCTCACGTGTTCCTGCATATCACATATTCCATCATACCAGGTTTGACCTTCCTGAGCCTTCCTTTCCTGCTCGGATCGTGTCCACCAAAGTTGAGCCTATTAGATGCTGGATTGGGAGTATTCACATCAATGGCGCTTCCTTCGGGAGTGCGTTTCGGCCCTTACCAAGGACAGCGAACAGACGTCGTTGACTCTTCGTACTGTTGGCAGATTTACGATAAGGATCGTAAGCCACTTCACTGCATTGACGCAGCCGATGCCAATAAATCTAACTGGATGCGATACGTGAACTGCGCCCGACACTGGAGGGAACAAAACCTTGTGGCATACCAATATCAAGGGGAATTGTATTACAGAACTATCAAAATAATTCCTCGCTACACGGAGCTGATGGTGTTCTACGGCAGCGAATTCGCGTGTGAACTGGACGTCGACCTCGGAAAGTACAACTCTCCGACTGGATATGCGCAGAAATTTGGTGCACCAGTTGCAAAGAAACGCAAACCGAACGATGACCATGCCAAGATAGAAACTCAGGAAGAAATACAAACGAGAAACTTCGAAATGGCTAACACACAAGTGCCGACATCTGCAAAAGGTGCTATTATCAAAGACATAACCAGTGAAATGCAAAATGGACAAGTAAATCTGACTTCGATAGGTTCAGGACAAGTTGGAGAAAATTACACCACAAAATCAGACGACATTAAAGGGGAAAAAAGCAGGAAAAAAGCAGTAACTAAAAACAGTCAGGTAAATAAGAGCAATGGTGTAATTTCAACAAAGAACAATAAAACATCGAAGGTAGCTCAAACCAAACAAGACGGTGCATGTGTTCATCTCAAACCTCATAACATTGAAAGAGATGAAAGTAAAAATAACGACATTAATCTAAACAAGGTAGAGTTCAAAACTAACCTTGCAGCACAAAACAATGTTCTAGACTTGTACATTTATTGTGATAGTTGCAACAAAAAGTGTGCAACAAGGCAAGAGCTTAAAACACATCTTAGATTTCATGATTTAAATCGAAAGTATGTTTGTGAAATTTGCAATTTAAGGTACACTTCAATTTCAAGTTTAAACGATCATAGTAATATTCATAGAATAAATAAAGATTATGAATTTACAAtatgcagtaaaatacatactcgaaatgataatttaaaatctcatatgagaactcacaccgaagaaaagcggtatgcctgtgaagtatgcaatgcaaggtttaatcaaaacagtgatttaaaaacacatatgagaactcacaccggagaaaagccgtatgcctgtgaagtatgcaatgcaagatttaatgaaaacggtaatttaaaaatacatatgagaactcacactggagaaaagccgtatgcttgtgaagtatgcaatgcaaggtttaatcataacagtaatttaaaaaaacatatgagaactcacactggagaaaagccgtatgcttgtgaagtatgcaatgcaaggtttaatcataacagtaatttaaaaaaacatatgagaactcacaccggagaaaagccgtatgcctgtgaagtatgcaatgcaaggtttaatcataacagtaatttaaaaaaacatatgagaactcacaccggagaaaagccgtatgcctgtgaagtatgcaatgcaaggtttaatcaaaacagtgatttaaaaagacatatgagaactcacaccggagaaaagccgtatgcctgtgaagtatgcaatgcaagatttaacgaaaacggttctttaaaaagacatatgagaactcacatcggagaaaagccgtatgcctgtgaagtatgcaatgcaagatttaatgaaaacggtaatttaaaaacacatatgagaactcacaccggagaaaagccgtatggctgtgaagtatgcaatgcaagatttaataaaaacggttctttaaaaaaacatatgagaactcacaccggagaaaagccgtatgcctgtgaagtatgcaatgcaagatttaatgaaaacggtaatttaaaaacacatatgagaactcacaccggagaaaagccgtatgcctgtgaagtatgcaatgcaagatttaataaaaacggttctttaaaaaaacatatgagaactcacaccggagaaaagccgtacgcctgcgaaatatgcgaagaaaaattcacctacacagcaagcttgaaaaatcacctcgtgaAAATACATCTTGGAGACAAAAGTAACCAAAAGCCTACAACATGA
Protein Sequence: MSQRNLRHKPRISYYEPEEPDLDEYVFCEKCGDYVYEYCAIHGPLLVIPDDKVPAKPNVPPYVPRAALTIPHVFLHITYSIIPGLTFLSLPFLLGSCPPKLSLLDAGLGVFTSMALPSGVRFGPYQGQRTDVVDSSYCWQIYDKDRKPLHCIDAADANKSNWMRYVNCARHWREQNLVAYQYQGELYYRTIKIIPRYTELMVFYGSEFACELDVDLGKYNSPTGYAQKFGAPVAKKRKPNDDHAKIETQEEIQTRNFEMANTQVPTSAKGAIIKDITSEMQNGQVNLTSIGSGQVGENYTTKSDDIKGEKSRKKAVTKNSQVNKSNGVISTKNNKTSKVAQTKQDGACVHLKPHNIERDESKNNDINLNKVEFKTNLAAQNNVLDLYIYCDSCNKKCATRQELKTHLRFHDLNRKYVCEICNLRYTSISSLNDHSNIHRINKDYEFTICSKIHTRNDNLKSHMRTHTEEKRYACEVCNARFNQNSDLKTHMRTHTGEKPYACEVCNARFNENGNLKIHMRTHTGEKPYACEVCNARFNHNSNLKKHMRTHTGEKPYACEVCNARFNHNSNLKKHMRTHTGEKPYACEVCNARFNHNSNLKKHMRTHTGEKPYACEVCNARFNQNSDLKRHMRTHTGEKPYACEVCNARFNENGSLKRHMRTHIGEKPYACEVCNARFNENGNLKTHMRTHTGEKPYGCEVCNARFNKNGSLKKHMRTHTGEKPYACEVCNARFNENGNLKTHMRTHTGEKPYACEVCNARFNKNGSLKKHMRTHTGEKPYACEICEEKFTYTASLKNHLVKIHLGDKSNQKPTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00737670;
90% Identity: iTF_00737670;
80% Identity: iTF_00737670;