Gpyr007788.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Gandaritis pyraliata
Gene Symbol
PRDM7
Assembly
GCA_947859175.1
Location
OX401858.1:1708882-1715213[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.0047 0.27 12.0 3.7 2 23 389 410 388 410 0.96
2 15 0.00044 0.026 15.2 0.2 1 23 416 438 416 438 0.97
3 15 0.0069 0.4 11.4 2.0 5 23 448 466 447 466 0.94
4 15 3.5e-07 2e-05 25.0 0.6 1 23 472 494 472 494 0.98
5 15 3.4e-06 0.0002 21.8 0.2 1 23 500 522 500 522 0.98
6 15 2.1e-07 1.2e-05 25.7 2.6 1 23 528 550 528 550 0.98
7 15 2.1e-07 1.2e-05 25.7 2.6 1 23 556 578 556 578 0.98
8 15 2.1e-07 1.2e-05 25.7 2.6 1 23 584 606 584 606 0.98
9 15 1.1e-07 6.5e-06 26.5 0.7 1 23 612 634 612 634 0.98
10 15 2.5e-06 0.00014 22.3 0.4 1 23 640 662 640 662 0.98
11 15 2.7e-06 0.00016 22.2 0.3 1 23 668 690 668 690 0.98
12 15 8.8e-06 0.00051 20.5 0.9 3 23 698 718 696 718 0.98
13 15 2.7e-06 0.00016 22.2 0.3 1 23 724 746 724 746 0.98
14 15 1.5e-06 8.8e-05 23.0 0.8 1 23 752 774 752 774 0.98
15 15 0.00039 0.023 15.4 0.2 1 23 780 803 780 803 0.94

Sequence Information

Coding Sequence
ATGTCCCAGCGTAATTTGCGGCACAAGCCGCGGATTAGTTATTACGAGCCAGAAGAACCTGATTTGGACGAGTATGTGTTTTGCGAAAAATGCGGAGACTACGTTTACGAGTACTGCGCCATTCATGGACCTTTACTGGTCATACCAGATGATAAGGTTCCCGCCAAACCCAATGTCCCACCGTACGTGCCTCGCGCGGCGCTAACTATTCCTCACGTGTTCCTGCATATCACATATTCCATCATACCAGGTTTGACCTTCCTGAGCCTTCCTTTCCTGCTCGGATCGTGTCCACCAAAGTTGAGCCTATTAGATGCTGGATTGGGAGTATTCACATCAATGGCGCTTCCTTCGGGAGTGCGTTTCGGCCCTTACCAAGGACAGCGAACAGACGTCGTTGACTCTTCGTACTGTTGGCAGATTTACGATAAGGATCGTAAGCCACTTCACTGCATTGACGCAGCCGATGCCAATAAATCTAACTGGATGCGATACGTGAACTGCGCCCGACACTGGAGGGAACAAAACCTTGTGGCATACCAATATCAAGGGGAATTGTATTACAGAACTATCAAAATAATTCCTCGCTACACGGAGCTGATGGTGTTCTACGGCAGCGAATTCGCGTGTGAACTGGACGTCGACCTCGGAAAGTACAACTCTCCGACTGGATATGCGCAGAAATTTGGTGCACCAGTTGCAAAGAAACGCAAACCGAACGATGACCATGCCAAGATAGAAACTCAGGAAGAAATACAAACGAGAAACTTCGAAATGGCTAACACACAAGTGCCGACATCTGCAAAAGGTGCTATTATCAAAGACATAACCAGTGAAATGCAAAATGGACAAGTAAATCTGACTTCGATAGGTTCAGGACAAGTTGGAGAAAATTACACCACAAAATCAGACGACATTAAAGGGGAAAAAAGCAGGAAAAAAGCAGTAACTAAAAACAGTCAGGTAAATAAGAGCAATGGTGTAATTTCAACAAAGAACAATAAAACATCGAAGGTAGCTCAAACCAAACAAGACGGTGCATGTGTTCATCTCAAACCTCATAACATTGAAAGAGATGAAAGTAAAAATAACGACATTAATCTAAACAAGGTAGAGTTCAAAACTAACCTTGCAGCACAAAACAATGTTCTAGACTTGTACATTTATTGTGATAGTTGCAACAAAAAGTGTGCAACAAGGCAAGAGCTTAAAACACATCTTAGATTTCATGATTTAAATCGAAAGTATGTTTGTGAAATTTGCAATTTAAGGTACACTTCAATTTCAAGTTTAAACGATCATAGTAATATTCATAGAATAAATAAAGATTATGAATTTACAAtatgcagtaaaatacatactcgaaatgataatttaaaatctcatatgagaactcacaccgaagaaaagcggtatgcctgtgaagtatgcaatgcaaggtttaatcaaaacagtgatttaaaaacacatatgagaactcacaccggagaaaagccgtatgcctgtgaagtatgcaatgcaagatttaatgaaaacggtaatttaaaaatacatatgagaactcacactggagaaaagccgtatgcttgtgaagtatgcaatgcaaggtttaatcataacagtaatttaaaaaaacatatgagaactcacactggagaaaagccgtatgcttgtgaagtatgcaatgcaaggtttaatcataacagtaatttaaaaaaacatatgagaactcacaccggagaaaagccgtatgcctgtgaagtatgcaatgcaaggtttaatcataacagtaatttaaaaaaacatatgagaactcacaccggagaaaagccgtatgcctgtgaagtatgcaatgcaaggtttaatcaaaacagtgatttaaaaagacatatgagaactcacaccggagaaaagccgtatgcctgtgaagtatgcaatgcaagatttaacgaaaacggttctttaaaaagacatatgagaactcacatcggagaaaagccgtatgcctgtgaagtatgcaatgcaagatttaatgaaaacggtaatttaaaaacacatatgagaactcacaccggagaaaagccgtatggctgtgaagtatgcaatgcaagatttaataaaaacggttctttaaaaaaacatatgagaactcacaccggagaaaagccgtatgcctgtgaagtatgcaatgcaagatttaatgaaaacggtaatttaaaaacacatatgagaactcacaccggagaaaagccgtatgcctgtgaagtatgcaatgcaagatttaataaaaacggttctttaaaaaaacatatgagaactcacaccggagaaaagccgtacgcctgcgaaatatgcgaagaaaaattcacctacacagcaagcttgaaaaatcacctcgtgaAAATACATCTTGGAGACAAAAGTAACCAAAAGCCTACAACATGA
Protein Sequence
MSQRNLRHKPRISYYEPEEPDLDEYVFCEKCGDYVYEYCAIHGPLLVIPDDKVPAKPNVPPYVPRAALTIPHVFLHITYSIIPGLTFLSLPFLLGSCPPKLSLLDAGLGVFTSMALPSGVRFGPYQGQRTDVVDSSYCWQIYDKDRKPLHCIDAADANKSNWMRYVNCARHWREQNLVAYQYQGELYYRTIKIIPRYTELMVFYGSEFACELDVDLGKYNSPTGYAQKFGAPVAKKRKPNDDHAKIETQEEIQTRNFEMANTQVPTSAKGAIIKDITSEMQNGQVNLTSIGSGQVGENYTTKSDDIKGEKSRKKAVTKNSQVNKSNGVISTKNNKTSKVAQTKQDGACVHLKPHNIERDESKNNDINLNKVEFKTNLAAQNNVLDLYIYCDSCNKKCATRQELKTHLRFHDLNRKYVCEICNLRYTSISSLNDHSNIHRINKDYEFTICSKIHTRNDNLKSHMRTHTEEKRYACEVCNARFNQNSDLKTHMRTHTGEKPYACEVCNARFNENGNLKIHMRTHTGEKPYACEVCNARFNHNSNLKKHMRTHTGEKPYACEVCNARFNHNSNLKKHMRTHTGEKPYACEVCNARFNHNSNLKKHMRTHTGEKPYACEVCNARFNQNSDLKRHMRTHTGEKPYACEVCNARFNENGSLKRHMRTHIGEKPYACEVCNARFNENGNLKTHMRTHTGEKPYGCEVCNARFNKNGSLKKHMRTHTGEKPYACEVCNARFNENGNLKTHMRTHTGEKPYACEVCNARFNKNGSLKKHMRTHTGEKPYACEICEEKFTYTASLKNHLVKIHLGDKSNQKPTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00738004;
90% Identity
iTF_00738004;
80% Identity
iTF_00738004;