Gnym034702.1
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- -
- Assembly
- GCA_963978555.1
- Location
- OZ021718.1:2239941-2241789[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.0031 43 5.5 0.0 21 45 248 272 244 277 0.90 2 6 0.047 6.5e+02 1.7 0.6 7 45 309 346 305 349 0.80 3 6 0.0066 91 4.4 0.0 21 43 350 372 346 379 0.91 4 6 0.014 2e+02 3.4 0.1 17 43 423 450 407 455 0.67 5 6 0.00094 13 7.2 0.2 21 45 456 480 449 485 0.89 6 6 0.00014 1.9 9.8 0.1 21 48 485 512 480 514 0.92
Sequence Information
- Coding Sequence
- ATGGATGGAAGTAAAACTGTATCTGTTGATAAATTTCATACAATATGTAGAATATGTCTCTCGCCTAATGACTTGCTACCATTTATTTCAACTGAAATCCTCAGAGTTTTTAGCGATATCACCAAAATAAAGgttCAAAATGATTTACTGcctaaaaatatttgtaaatgcTGTTTGAGACATTTAGAAGATATTTTGCAGTTTATTAAACTATGTACAGCCAACAATTCACTTCTACTTAAAGCATTAgatcaaataaaaaatgatacaaAACTATCTGGGGAATTGGCTTGCATTGACTATACTGAAGATTACACAATGAATCATAACAACTTTACAGAAAACCAAAAAGAAGTATTCCAATGTGATGTATGCAACATGACATTTACCATGAAAAAGCTACTAATACACCATGTGAAACAACATATGGATAAGAAATATTCTGATAATATTGATAGCAAGGATTTAACATGTGAATTGAATTGTAAAATATGTGGGAAATTATTTGGTAACAATATTGCCTTGTTCAGACACAACAAATTAcacaggaaaagaaaaaaacagtCACAAGGTAAAAGCTTTAAATTCAACTGTGATGAATGTGATCGTGTTTTAACTTCACAACATGCATTAGAGAGTcataaaaaaacacattctgGCGAACGACCATTCAAATGTACTCATTGTGAAAAAGATTTTCCATATCTTGGCAGTTTAATCATACACACAAGGCTTCACACTGgaGAAACACCATACATCTGTTCTGTTTGTAACAAAGGTTACCGCAGCTCTACAAGTCTTAAGAAACATAAAGAGAAACATGTTATTGAACAAGAGCTTCTTGAAGACAACAAACTCCAGAAGGATCATGTATCTACAGATTCACAAAAAGTTAAATGTTCCTTTTGTAACAAGATTCTTAGTAAACATGGTTATGGTACTCATCTAAGAACACACAcgaatagaaaaaaaatcttcTGCTGCACCGTCTGCAACAAAATGTTCCAAAAACACTCTCATTTACAGAGACACGTCAGGATTCATACAGGAGAGCGTCCATATGTTTGTAAAATTTGTGGTAAATCTTTCATCCAAAATGGAGATTTAAAACGACACAGTGTAACTCATTGCGACCAAAGAGAATTCCAATGCCAATATTGcggaaaacagttttttacaaaatgttcCCTAAGTACTCACATTTTGCATCATTGCAAAGTTTCCAAGAAAGCTGTACACACTGACCAAACACTACAAGTTAATAACATAAAATCTCAAATAAGCGAAAAACCTTTTTTGTGTACAATATGTGGGAAATCATTTACAGCAAACAGCAGTCTAAAAGTTCATCACAGATTACACACTGGAGAAAACCCATTTGTATGCAATATTTGTAGTAAGGCTTATAACAACTCCAGTGCTCTTAAGAGGCACATAATAAGGTATCATACTGATGAAAAACCTCATGTTTGTAAGATTTGCCAAAAAGGTTTCCATGATTCAGCAAGTTTGAAAAGACATGTCAAAATAGTACATTCTGTActggaaattgaaaatgatggatACCGGTCTATTGAAGCTTATAGTAATAGTGTTTAG
- Protein Sequence
- MDGSKTVSVDKFHTICRICLSPNDLLPFISTEILRVFSDITKIKVQNDLLPKNICKCCLRHLEDILQFIKLCTANNSLLLKALDQIKNDTKLSGELACIDYTEDYTMNHNNFTENQKEVFQCDVCNMTFTMKKLLIHHVKQHMDKKYSDNIDSKDLTCELNCKICGKLFGNNIALFRHNKLHRKRKKQSQGKSFKFNCDECDRVLTSQHALESHKKTHSGERPFKCTHCEKDFPYLGSLIIHTRLHTGETPYICSVCNKGYRSSTSLKKHKEKHVIEQELLEDNKLQKDHVSTDSQKVKCSFCNKILSKHGYGTHLRTHTNRKKIFCCTVCNKMFQKHSHLQRHVRIHTGERPYVCKICGKSFIQNGDLKRHSVTHCDQREFQCQYCGKQFFTKCSLSTHILHHCKVSKKAVHTDQTLQVNNIKSQISEKPFLCTICGKSFTANSSLKVHHRLHTGENPFVCNICSKAYNNSSALKRHIIRYHTDEKPHVCKICQKGFHDSASLKRHVKIVHSVLEIENDGYRSIEAYSNSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00736036; iTF_00911314;
- 90% Identity
- iTF_00736036;
- 80% Identity
- iTF_00736036;