Gnym034702.1
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- -
- Assembly
- GCA_963978555.1
- Location
- OZ021718.1:2239941-2241789[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 7.7e-05 0.012 17.2 2.6 1 23 120 142 120 142 0.98 2 12 0.00068 0.11 14.2 0.4 2 23 161 182 160 182 0.94 3 12 4e-05 0.0062 18.1 1.5 1 23 196 218 196 218 0.98 4 12 4.6e-05 0.007 17.9 1.4 1 23 224 246 224 246 0.98 5 12 2.7e-05 0.0042 18.6 1.9 1 23 252 274 252 274 0.97 6 12 0.38 59 5.5 2.5 2 23 299 319 298 319 0.97 7 12 0.00017 0.027 16.1 8.7 1 23 326 348 326 348 0.97 8 12 1.5e-07 2.3e-05 25.7 0.4 1 23 354 376 354 376 0.96 9 12 0.00044 0.068 14.8 7.2 1 23 382 404 382 404 0.98 10 12 2e-06 0.0003 22.2 2.0 1 23 432 454 432 454 0.95 11 12 7.2e-07 0.00011 23.6 0.5 1 23 460 483 460 483 0.97 12 12 1.8e-05 0.0027 19.2 2.2 1 23 489 512 489 512 0.96
Sequence Information
- Coding Sequence
- ATGGATGGAAGTAAAACTGTATCTGTTGATAAATTTCATACAATATGTAGAATATGTCTCTCGCCTAATGACTTGCTACCATTTATTTCAACTGAAATCCTCAGAGTTTTTAGCGATATCACCAAAATAAAGgttCAAAATGATTTACTGcctaaaaatatttgtaaatgcTGTTTGAGACATTTAGAAGATATTTTGCAGTTTATTAAACTATGTACAGCCAACAATTCACTTCTACTTAAAGCATTAgatcaaataaaaaatgatacaaAACTATCTGGGGAATTGGCTTGCATTGACTATACTGAAGATTACACAATGAATCATAACAACTTTACAGAAAACCAAAAAGAAGTATTCCAATGTGATGTATGCAACATGACATTTACCATGAAAAAGCTACTAATACACCATGTGAAACAACATATGGATAAGAAATATTCTGATAATATTGATAGCAAGGATTTAACATGTGAATTGAATTGTAAAATATGTGGGAAATTATTTGGTAACAATATTGCCTTGTTCAGACACAACAAATTAcacaggaaaagaaaaaaacagtCACAAGGTAAAAGCTTTAAATTCAACTGTGATGAATGTGATCGTGTTTTAACTTCACAACATGCATTAGAGAGTcataaaaaaacacattctgGCGAACGACCATTCAAATGTACTCATTGTGAAAAAGATTTTCCATATCTTGGCAGTTTAATCATACACACAAGGCTTCACACTGgaGAAACACCATACATCTGTTCTGTTTGTAACAAAGGTTACCGCAGCTCTACAAGTCTTAAGAAACATAAAGAGAAACATGTTATTGAACAAGAGCTTCTTGAAGACAACAAACTCCAGAAGGATCATGTATCTACAGATTCACAAAAAGTTAAATGTTCCTTTTGTAACAAGATTCTTAGTAAACATGGTTATGGTACTCATCTAAGAACACACAcgaatagaaaaaaaatcttcTGCTGCACCGTCTGCAACAAAATGTTCCAAAAACACTCTCATTTACAGAGACACGTCAGGATTCATACAGGAGAGCGTCCATATGTTTGTAAAATTTGTGGTAAATCTTTCATCCAAAATGGAGATTTAAAACGACACAGTGTAACTCATTGCGACCAAAGAGAATTCCAATGCCAATATTGcggaaaacagttttttacaaaatgttcCCTAAGTACTCACATTTTGCATCATTGCAAAGTTTCCAAGAAAGCTGTACACACTGACCAAACACTACAAGTTAATAACATAAAATCTCAAATAAGCGAAAAACCTTTTTTGTGTACAATATGTGGGAAATCATTTACAGCAAACAGCAGTCTAAAAGTTCATCACAGATTACACACTGGAGAAAACCCATTTGTATGCAATATTTGTAGTAAGGCTTATAACAACTCCAGTGCTCTTAAGAGGCACATAATAAGGTATCATACTGATGAAAAACCTCATGTTTGTAAGATTTGCCAAAAAGGTTTCCATGATTCAGCAAGTTTGAAAAGACATGTCAAAATAGTACATTCTGTActggaaattgaaaatgatggatACCGGTCTATTGAAGCTTATAGTAATAGTGTTTAG
- Protein Sequence
- MDGSKTVSVDKFHTICRICLSPNDLLPFISTEILRVFSDITKIKVQNDLLPKNICKCCLRHLEDILQFIKLCTANNSLLLKALDQIKNDTKLSGELACIDYTEDYTMNHNNFTENQKEVFQCDVCNMTFTMKKLLIHHVKQHMDKKYSDNIDSKDLTCELNCKICGKLFGNNIALFRHNKLHRKRKKQSQGKSFKFNCDECDRVLTSQHALESHKKTHSGERPFKCTHCEKDFPYLGSLIIHTRLHTGETPYICSVCNKGYRSSTSLKKHKEKHVIEQELLEDNKLQKDHVSTDSQKVKCSFCNKILSKHGYGTHLRTHTNRKKIFCCTVCNKMFQKHSHLQRHVRIHTGERPYVCKICGKSFIQNGDLKRHSVTHCDQREFQCQYCGKQFFTKCSLSTHILHHCKVSKKAVHTDQTLQVNNIKSQISEKPFLCTICGKSFTANSSLKVHHRLHTGENPFVCNICSKAYNNSSALKRHIIRYHTDEKPHVCKICQKGFHDSASLKRHVKIVHSVLEIENDGYRSIEAYSNSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00736283;
- 90% Identity
- iTF_00736283;
- 80% Identity
- iTF_00736283;