Gnig003063.1
Basic Information
- Insect
- Galeopsomyia nigrocyanea
- Gene Symbol
- Hr39
- Assembly
- GCA_035047105.1
- Location
- JAWWMK010000008.1:13784202-13789776[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1 1.4e+04 -3.8 4.5 64 85 38 56 13 144 0.43 2 4 3 4.1e+04 -9.1 17.2 45 163 264 381 251 440 0.52 3 4 5.4e-08 0.00074 20.2 0.0 1 21 571 591 571 596 0.92 4 4 4.1e-74 5.7e-70 238.0 0.0 87 408 626 951 605 951 0.88
Sequence Information
- Coding Sequence
- ATGTCCGAACAGAGCGGAAGTATCGGGGCAACGGCGGTGCCGGAACCCGGGCCCGCCTGGTGGAATCCAGCCAACGTGCAACCCTGGAAGtcatcgtcttcgtcgtcATCCTCCTCgttgtcgacgacgacgacgacgacgatggcggCGACGAGTCAGTCGATCAGAAGCCAAGAGCACGCGAAAAATGTCTCTGTCACGACGATCAATGTGCCGCCACCTATACACGACATGCACGACGGTAAAAGCGTGTGCAAATACCAGGCCGGGCAGAACGGTGTCACAGTGTCGGTAGTGTCGAGCTgtcacagcagcagcggcaacagCAACAGTGGCGGCAACAACAATAACGGCGGCAGCAGTAGCGGAAGTAGTAGCGGAGTGACGAGCTCGGCGGCGGATTCCGGCGAATCGGCCTCGGTCGACGAGAGCGTCGAGGGCGACAGCGACGGCGAGGTCAGTCGCATTGACTTCCGCGGCGTCAATCTGCGCACCAAGAAGAAGAGAGACGCGTCGGGGCGAGACGACGACAACGATGTCGTGCATCAACAGCCCGAGAGGCCAATGTCGTGGGAAGGCGAGCTCTCCGATCAGGAGATGTCTTCCAACACCATCACTCAGGATCACGAGGAAACGTCGATGGAAGGCGTACAAGTATGCAGCTCGAGTCCCGGTCCACAAGAGCACAAATTTCCAATCAAACCTGAGCCGGACTTTCGCTCTAGTCCCGGTCTACAGAATCTTGGCGGTAACTTGCTGAACGAGACGATCGTCGCCGTACCTCACGTGCAACAACaacttcatcatcatcaacagcatcagcagcagcatcaacagactcagcagcagcaacagcagaatCTCGAGCAAGGACAGCAAAGCGATCTGCCGCTACTCGTTGGCAAACTGCTCGGCGGTTGCAGCAGTTCCACGCCCAATCACAGTCCCGTGCTCATACCCAGACATCATCTCACCAAGCACAGCCATACTCGATCGCAAGTCCCATCGCCAGACTCGGCGATTCACTCGGCGTACAGCGTGTTCAGTTCGCCGACTCAGTCTCCGCACGCGGGTCGTCACTCGGCCCTCGGTCCCGGCTCGCCAGTACCCTCGTCgtcgctctcgctctcccgaCACAGCTTCAACAACTCCACCTCCTCGTTGTCGCTCTCCTTGTCGCACTCGCTGTCGCGAAACAATTCCGACGCGTCGAGCAGTTGCTACAGCTACGGCTCTCTCAGTCCACCGACGCACTCGCCGGTGCAGCAACGCCACGCTCATCATCACGCCGccgctcagcagcagcaacagcagcaagcGGCGGCCGCGCTACATCTGCAGTCGGGAGTCGCTCAAGCGGCACATCattacgctgctgctgcttctggcGCGGGAATCGGAGGCGGAGACGCCAACGACGCGCATCTCGACGATCAGGACGACTGCAGGATACCTTCGGCGCCGTCCGGCATCTCCACCAGGCAGCAGCTCATCAACAGTCCCTGTCCCATTTGCGGCGACAAAATCAGCGGATTTCACTACGGTATTTTCTCGTGCGAGTCCTGTAAGGGCTTTTTCAAGAGGACGGTGCAAAACCGCAAAAACTATGTGTGCCTTAGGGGGGCAGGCTGTCCGGTGACAGTGGCAACACGCAAGAAATGTCCAGCCTGCCGCTTCGACAAGTGCCTCAACATGGGTATGAAGCTAGAGGCGATCAGAGAGGATCGAACGCGCGGTGGCCGTAGCACGTATCAGTGCACGTACACGTTGCCTGCAAACTTGATGGGTGGCCCAGGCATGAGCTCTGACAAGATGGGTCAAGGTGGACCTTGCAGTCCCGCATCCATGGGTGGCGAGCATCATCACTCCATGAAACACCACTCCAATCATTCCCACAAAATGCAGGCGGTGCCGCAGCTACTCCAGGACATCATGGATGTCGAACATTTGTGGCATTACAATGACAACGACAGAGTTGGCGCCATGAGCTCGCTCAATCTTTCTCAGTCGTTGCCCAACAGCGCGAGCGGCGATTCGCTGAGCGGCTTAGGTACTTCGAATGGCCTAGCTACTAGTTCGAGTGGTAGCAATCTGAGCAGTGCCACGAGCAATGGCAATCTCACTCCTCAACCCGAGCCAATTCGCCCGAATTCGACCAACTCGGCGTCGTCTACTCCAAGCTTGGAACAGCAACACTCACCTCCGTCCCTTCCGTCCAGCAATCCACCGAGTAGCTCGTCTAACGGCAACTCAACGCAGCATCCTGATTTCCTGTCAAACTTGTGCAATATCGCCGATCATCGGCTCTACAAGATCGTCAAGTGGTGCAAGAGCCTGCCgctattcaaaaatatctccATCGACGACCAGATTTGTCTGCTCATCAACTCCTGGTGCGAGTTGCTGCTGTTCTCTTGCTGTTTTCGCAGTATGAGCACCCCTGGTGAGATCAGGGTGTCGCTTGGCAAGTCTATCACTTTGGAGCAGGCCAAACAGCTGGGACTGGCTACGTGTATCGAGAGGATGCTGGCATTCACGAATAATTTGAGGCGACTCAGGGTCGATCAGTACGAGTATGTCGCTATGAAGgTAATAGTGTTGCTGACATCAGATACAAGTGAGTTGAAGGAGCCCGAAAAAGTGCGCGCCTCGCAAGAAAAAGCTTTACAAGCGCTACAACAATACACGATTGCCAGGTACCCGGAAATGCCAGCCAAATTCGGCGAACTCCTACTGCGAATTCCTGACCTACAAAGAACTTGTCAAGCAGGCAAAGAACTTCTGAGCGCCAAGCGTGCAGAAGGCGAAGGTTGCTCTTTTAATCTTCTGATGGAACTGCTTCGAGGGGACCATTAA
- Protein Sequence
- MSEQSGSIGATAVPEPGPAWWNPANVQPWKSSSSSSSSSLSTTTTTTMAATSQSIRSQEHAKNVSVTTINVPPPIHDMHDGKSVCKYQAGQNGVTVSVVSSCHSSSGNSNSGGNNNNGGSSSGSSSGVTSSAADSGESASVDESVEGDSDGEVSRIDFRGVNLRTKKKRDASGRDDDNDVVHQQPERPMSWEGELSDQEMSSNTITQDHEETSMEGVQVCSSSPGPQEHKFPIKPEPDFRSSPGLQNLGGNLLNETIVAVPHVQQQLHHHQQHQQQHQQTQQQQQQNLEQGQQSDLPLLVGKLLGGCSSSTPNHSPVLIPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAGRHSALGPGSPVPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQRHAHHHAAAQQQQQQQAAAALHLQSGVAQAAHHYAAAASGAGIGGGDANDAHLDDQDDCRIPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPANLMGGPGMSSDKMGQGGPCSPASMGGEHHHSMKHHSNHSHKMQAVPQLLQDIMDVEHLWHYNDNDRVGAMSSLNLSQSLPNSASGDSLSGLGTSNGLATSSSGSNLSSATSNGNLTPQPEPIRPNSTNSASSTPSLEQQHSPPSLPSSNPPSSSSNGNSTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQAKQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGCSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00079965;
- 90% Identity
- iTF_00734668;
- 80% Identity
- iTF_00734668;