Basic Information

Insect: Frieseomelitta varia
Gene Symbol: gtf3a
Assembly: GCA_011392965.1
Location: WNWW01000135.1:1010491-1016124[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 4.6e-05 0.0028 17.2 0.1 2 23 731 752 730 752 0.97

2 16 0.63 39 4.2 1.5 3 23 786 806 785 806 0.97

3 16 0.00018 0.011 15.3 1.2 3 23 815 836 814 836 0.98

4 16 0.0019 0.12 12.1 2.0 1 23 843 866 843 866 0.95

5 16 6.6e-05 0.0041 16.7 0.7 1 23 872 895 872 895 0.94

6 16 0.91 56 3.7 2.5 2 23 903 923 903 923 0.94

7 16 9.7e-08 6e-06 25.6 2.1 2 23 929 950 928 950 0.97

8 16 1.6e-06 9.7e-05 21.8 0.2 1 23 956 978 956 978 0.99

9 16 0.00039 0.024 14.3 2.4 2 23 990 1012 989 1012 0.95

10 16 0.0055 0.34 10.7 2.5 1 23 1018 1041 1018 1041 0.96

11 16 0.018 1.1 9.1 3.8 3 23 1063 1084 1062 1084 0.95

12 16 0.00081 0.05 13.3 1.4 2 23 1091 1113 1090 1113 0.96

13 16 2.7e-05 0.0017 18.0 1.0 2 23 1121 1142 1120 1142 0.96

14 16 0.00084 0.052 13.2 2.3 1 23 1148 1171 1148 1171 0.96

15 16 0.23 14 5.6 3.2 2 23 1178 1199 1177 1199 0.96

16 16 0.0067 0.41 10.4 2.6 1 23 1205 1227 1205 1227 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	4.6e-05	0.0028	17.2	0.1	2	23	731	752	730	752	0.97
2	16	0.63	39	4.2	1.5	3	23	786	806	785	806	0.97
3	16	0.00018	0.011	15.3	1.2	3	23	815	836	814	836	0.98
4	16	0.0019	0.12	12.1	2.0	1	23	843	866	843	866	0.95
5	16	6.6e-05	0.0041	16.7	0.7	1	23	872	895	872	895	0.94
6	16	0.91	56	3.7	2.5	2	23	903	923	903	923	0.94
7	16	9.7e-08	6e-06	25.6	2.1	2	23	929	950	928	950	0.97
8	16	1.6e-06	9.7e-05	21.8	0.2	1	23	956	978	956	978	0.99
9	16	0.00039	0.024	14.3	2.4	2	23	990	1012	989	1012	0.95
10	16	0.0055	0.34	10.7	2.5	1	23	1018	1041	1018	1041	0.96
11	16	0.018	1.1	9.1	3.8	3	23	1063	1084	1062	1084	0.95
12	16	0.00081	0.05	13.3	1.4	2	23	1091	1113	1090	1113	0.96
13	16	2.7e-05	0.0017	18.0	1.0	2	23	1121	1142	1120	1142	0.96
14	16	0.00084	0.052	13.2	2.3	1	23	1148	1171	1148	1171	0.96
15	16	0.23	14	5.6	3.2	2	23	1178	1199	1177	1199	0.96
16	16	0.0067	0.41	10.4	2.6	1	23	1205	1227	1205	1227	0.98

Sequence Information

Coding Sequence: ATGAAgcacattgaaattaaaaacaaggATCATAATTATAGTGAAGTAAAATTACGTAATCTCCAGCACGCTACTagtaatattctaaatatatgtgACAATGATATTAAAACAGTATGTAAATCAAACAAATCTGGTATAATATCAAACAAAGAGACATTTGGTCagattaaagatattaatgaaTTGAAGAAAATCACTCCACGTGTGAAACTATTGACTCATGATGCAAATAGTTTAAAcgaattaactaaaatttctttgcacaataaaatatctgcacaaaagaaattatcgatattGGAGCAAACAAAACAGGAGTTGAAAAAGTATTGCAGAACTTGTGCTGGCTTAAAACTTCCATTAGTTGATATTTTTAGTGAAAAAGGTAATCAAATGAGATTAAGTCAACAAATTAGACATTTAGAAGACATAAATCAGTATGACAGCTTATCGACTCAAATGTGCATGGATTGTATTTGTGACTTGAAAATGAGTTATAagttttttatgcaaattaagAAGGCAGAAGTTAAGTTGAAATCCATTCACATTACTCTGACTGATACGGCAACAAGAAACATGgaattgaataaaacaaaGCCTGTAGCAAGTCTTGAAAGACAAGTGGAAAATATTGCTGAAAGTAATATCAAAAGTCCATCCAcaagtaaagaaaataatgaaaatattgttccAAAAATATCTGCAAtgttttcattaaaagatgataaaatacttgaaaaaaatgttcggaAAGTAAATCATAAAGAGTCAGAAAGTAAAGttgaagttgaaatttttgaagaatctattgtacaaaatagTGATGATAATGAGTCTATAGAAGAATTTGATCCAGACGATCCTCCTTTTCAACCTGACAGCTCTGATGTAGCAGAATCTGATGATGAAGTAGAAATACCAAATGCAAAAAGACGATGTATTCAACAGAAGGAAAGTATGAAACAATGTTCACAATCATCTTCTGTTTCTGATAATAATTCAGTctcagataataaaaatattgacataAAGCAAAcaacatataattatgatacttGTCTAAAAacatatgttaaaataaaagatacggATTGTAATAATCAATCTACTGAGTTACACAGCATTATTAATTCTGAAACTGCTATATACAATACTGAAAGTACAAAAGAATGTTCAAAACAaccaaatatattaaaacgcAGGTTGTTATTACAATCTAAAAAAGAATCTGCGGAAGAAACCGATGAAAATTGTCAgtcaaatatttctgataaatgTGGAAGCCATAAGGatttaaaagtacaaaaacTTGATGTAAACAATTCTTTAAACAGTAATCAAGAGGATGGGATTATGTATGTTACTGTAAAGGGATCTAAAccgaatgaaatattgttagtaaaagttaaaaaaatggaaaaatcattagaaaaaaaagatgataaaTCTGtagcgaaaaaaaattttgatattaaaccaatggacaaaattttaaaacgatatGAAACATtagttacaaaagaaaaagatttatttccaGAGCGAacaaaaaaatcagaaataaGAGAACAGATTATAGAAGAACAAATAgaagaatataagaaaaagCGAGAAAAAGTATTAGGTGGACATGCTAATATTGTTGCACTTCCAAAACTTGAAGAATCTCGTTGTTTTAAACGTAATGAAAATCAAGATAATCAAAGATCTCTTGCTGTAGAAAGTGATTCTATTGAAAATGTAGAGTTTAATAAAGATGATGGTGAATTGAATCCAACTACTAATAGTGAAGatgatatttcagaaatttccgAATCAGCCAAAGAAAAGTCCGCAAATGAAAAAACATATGTAAATACTGAAGAATATTTGTCACATTTAGCAAAACTTAAATTGAAATGGgaagaagcaaaaaagaaaaaagagtcaCTTCAAAAGGAACTAGATGAATCTTATACAGAAggaaatattgagaaattaacaagaattttaggagaaaaagaaaaaaacttgcaAGATTTCCAAGATTATCTAAAACaacgtaaaattgtaattacaagaTTAAAAGATGAAGACATTATTTCTCTTTATGAAGACAGAAATAATGCAGttcttaaaaacaatttaccTGACTTAATAGATGAAAGTCAACCGGCAGATTATATTCCAGAAGAACATTATTTAGAATGTGATTATTGTCCAGAGACATTTGCTTCTAAAGAAGTTCTTGAAGAACATTTGAAAACacatgattataaaattatgcatTTTTGCGAAGATTGTATGGAAGAATTTCCAACAAATAAAGCAAAACGAAATCataatgtaatttgtataaaaaaattattatgtaaatattgtgACATGATGTTGgattcaaaaggaaaaaagcgTCAGCATGAACAAAAACATTGTGATAGTATGTATGGACAATTATGTGATGTATgtggtgaaaaatttaaacatcaaGGAACATTAGATCAACATGTAAAAACACAACACATGAGTTGGgagaaaatatatcaatgtCCAAAGTGTCCTAAAAAGTTTGCATTCAAACAAAAACTtagttttcatttgaaatctGTACACACAACATTAAGGGCCTATTTATGCGAGGATTGTGGAGCTGATTTTAAAAATCCTGCAAGTCTGAGACATCATAGAATACGTAAACATCAACCTGTAGGTAATAAAAGAGAATGTCCAGTATGTCATAAATTAGTACCATTTTATAGCCTTTCTAAACACATGCATACTCATAAAGCATATACTATTCAGTGTCCACACTGTgacaaaatgtttaaaaatagttcAACTTTAAAACAACATGTGAGAATTCATGAAGACCAGCGTCAATATCGATGTGATACTTGTGGTGTTGGGTTTAATAGACGAGATGGCTTAAGGTTACACATGAGAGTGCATGAAAAAACTGATAGTAGAGGATTAAAAGAATGTTCGTGTCAAGTATGTGGTGAAAAGTTTCCAAATCATTCAACACTTGTCATACATAGAAACCGAGTTCATAAAGATGGTAGGCAATATACTTGCCATATATGTAACAGATCAATGATTTCAACTAGATCATTAGAGTGGCATATGTCTCATATACACAATGAATCACTTCCTGGTGTAAAAGAAGACATAGATGGACCaccagaaaagaaaagagcatCATGTTATCATTGTAATAAGACATTCAAAACAGAAATGATTTTGAGaacacatattaaaaatacacatatGGAGAAAGATCCTATGAAGTGTTTAGACTGTGAATTAACATTTACTTCTGAAGTTAGATTAAGACATCATATGATGGTCACACACAATAGATTAGAAGGAACTTTGCCTTGTCCACATTGTCCAAAGAGGTTTGTGAATCAACTCAGATTAAAAACTCATATGATATCCCATTCTGAAGAAAGGCCATATACTTGTGAAATCTgtggatttaatttaaaaactaaaatacaGTTGATAAAGCATCATCAAAATAGGCATAGCGATGAAAGACCTTTACAGTGTAGATATTGTCCTTGGAGATGTAAACAAGTTAGCGCTCTTGTATGTCATGAAAGAACTCATACAAATGAAAGACCATATTCTTGTAGCGTGTGTAGGcaacgttttaaatatttaggtgataaaaataaacatgaaaGACGACATGAAAGTTTAGGTGGATCTGGATTTAAAAGAATAGTACTTGGTCGAAACATCAAAGCTACTAAAGTACAGGAAGATTCTTCTTGTTCTGAACATGAGcaagaaagtttaaataatacgGAATCTCAAATTCCTGAAAGTGAATATCAAGAACAGACAGATCAACAATTTGAGGAAGAGCAAAtagtgaaatttgaagaagaacAAATAGTGAAGTTTGAAGAAGAACAAATAGTTAAGTTTGAAGAACAAGAAATAACGGAAGAATATGAACAAGTATATGAACAGGAATATGAAGAGACATCTAGAGAGGCTTCGGATGCAGCAGAAGTTATAATGAACATGGAAGATACTACTGTTTACACAGAAGAAGTAACTACAGATAATATTGAACATACGGAAATTATGGCAGATGAAATGATGACAAATGAGATATTACAATCAGGTGCCGTAGTTCATTTACAACAAGAAGATGATTCAGGAAAAATACAAGTGATTCCAGTGATGTTATCTTTACCTGATTTGTCTGATGCAAATACAGAGGTCAATTTAGCTACTGCatctattatgtataataattga
Protein Sequence: MKHIEIKNKDHNYSEVKLRNLQHATSNILNICDNDIKTVCKSNKSGIISNKETFGQIKDINELKKITPRVKLLTHDANSLNELTKISLHNKISAQKKLSILEQTKQELKKYCRTCAGLKLPLVDIFSEKGNQMRLSQQIRHLEDINQYDSLSTQMCMDCICDLKMSYKFFMQIKKAEVKLKSIHITLTDTATRNMELNKTKPVASLERQVENIAESNIKSPSTSKENNENIVPKISAMFSLKDDKILEKNVRKVNHKESESKVEVEIFEESIVQNSDDNESIEEFDPDDPPFQPDSSDVAESDDEVEIPNAKRRCIQQKESMKQCSQSSSVSDNNSVSDNKNIDIKQTTYNYDTCLKTYVKIKDTDCNNQSTELHSIINSETAIYNTESTKECSKQPNILKRRLLLQSKKESAEETDENCQSNISDKCGSHKDLKVQKLDVNNSLNSNQEDGIMYVTVKGSKPNEILLVKVKKMEKSLEKKDDKSVAKKNFDIKPMDKILKRYETLVTKEKDLFPERTKKSEIREQIIEEQIEEYKKKREKVLGGHANIVALPKLEESRCFKRNENQDNQRSLAVESDSIENVEFNKDDGELNPTTNSEDDISEISESAKEKSANEKTYVNTEEYLSHLAKLKLKWEEAKKKKESLQKELDESYTEGNIEKLTRILGEKEKNLQDFQDYLKQRKIVITRLKDEDIISLYEDRNNAVLKNNLPDLIDESQPADYIPEEHYLECDYCPETFASKEVLEEHLKTHDYKIMHFCEDCMEEFPTNKAKRNHNVICIKKLLCKYCDMMLDSKGKKRQHEQKHCDSMYGQLCDVCGEKFKHQGTLDQHVKTQHMSWEKIYQCPKCPKKFAFKQKLSFHLKSVHTTLRAYLCEDCGADFKNPASLRHHRIRKHQPVGNKRECPVCHKLVPFYSLSKHMHTHKAYTIQCPHCDKMFKNSSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMRVHEKTDSRGLKECSCQVCGEKFPNHSTLVIHRNRVHKDGRQYTCHICNRSMISTRSLEWHMSHIHNESLPGVKEDIDGPPEKKRASCYHCNKTFKTEMILRTHIKNTHMEKDPMKCLDCELTFTSEVRLRHHMMVTHNRLEGTLPCPHCPKRFVNQLRLKTHMISHSEERPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGSGFKRIVLGRNIKATKVQEDSSCSEHEQESLNNTESQIPESEYQEQTDQQFEEEQIVKFEEEQIVKFEEEQIVKFEEQEITEEYEQVYEQEYEETSREASDAAEVIMNMEDTTVYTEEVTTDNIEHTEIMADEMMTNEILQSGAVVHLQQEDDSGKIQVIPVMLSLPDLSDANTEVNLATASIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00684931;
90% Identity: iTF_00684323; iTF_00140754; iTF_00142611; iTF_00141365; iTF_00141981; iTF_00684931;
80% Identity: -