Basic Information

Insect: Frankliniella occidentalis
Gene Symbol: -
Assembly: None
Location: ML763221.1:393014-400225[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.72 5.9e+02 0.6 0.2 15 44 374 403 365 408 0.77

2 17 0.0054 4.4 7.4 0.0 21 46 408 433 404 435 0.91

3 17 0.052 43 4.2 0.2 21 45 436 460 432 467 0.86

4 17 0.04 33 4.6 0.2 22 45 465 488 460 491 0.90

5 17 5.2 4.3e+03 -2.2 0.1 26 35 852 861 829 869 0.80

6 17 0.00028 0.23 11.5 0.2 20 52 981 1013 974 1015 0.86

7 17 0.3 2.5e+02 1.8 0.1 21 52 1010 1041 1008 1043 0.87

8 17 0.99 8.1e+02 0.1 0.0 21 46 1038 1063 1034 1071 0.82

9 17 0.16 1.3e+02 2.7 0.0 21 44 1066 1089 1059 1093 0.88

10 17 0.015 13 5.9 0.0 21 46 1094 1119 1088 1126 0.84

11 17 0.014 11 6.1 0.1 22 53 1123 1154 1118 1155 0.87

12 17 0.84 6.9e+02 0.4 0.1 23 46 1152 1175 1148 1182 0.82

13 17 0.49 4e+02 1.1 0.0 22 52 1207 1237 1199 1238 0.86

14 17 0.11 94 3.1 0.0 22 44 1235 1257 1231 1262 0.90

15 17 0.078 64 3.7 0.3 21 44 1262 1285 1258 1289 0.87

16 17 0.014 11 6.1 0.0 22 46 1291 1315 1286 1321 0.89

17 17 2.3 1.9e+03 -1.1 0.1 22 44 1319 1341 1316 1346 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.72	5.9e+02	0.6	0.2	15	44	374	403	365	408	0.77
2	17	0.0054	4.4	7.4	0.0	21	46	408	433	404	435	0.91
3	17	0.052	43	4.2	0.2	21	45	436	460	432	467	0.86
4	17	0.04	33	4.6	0.2	22	45	465	488	460	491	0.90
5	17	5.2	4.3e+03	-2.2	0.1	26	35	852	861	829	869	0.80
6	17	0.00028	0.23	11.5	0.2	20	52	981	1013	974	1015	0.86
7	17	0.3	2.5e+02	1.8	0.1	21	52	1010	1041	1008	1043	0.87
8	17	0.99	8.1e+02	0.1	0.0	21	46	1038	1063	1034	1071	0.82
9	17	0.16	1.3e+02	2.7	0.0	21	44	1066	1089	1059	1093	0.88
10	17	0.015	13	5.9	0.0	21	46	1094	1119	1088	1126	0.84
11	17	0.014	11	6.1	0.1	22	53	1123	1154	1118	1155	0.87
12	17	0.84	6.9e+02	0.4	0.1	23	46	1152	1175	1148	1182	0.82
13	17	0.49	4e+02	1.1	0.0	22	52	1207	1237	1199	1238	0.86
14	17	0.11	94	3.1	0.0	22	44	1235	1257	1231	1262	0.90
15	17	0.078	64	3.7	0.3	21	44	1262	1285	1258	1289	0.87
16	17	0.014	11	6.1	0.0	22	46	1291	1315	1286	1321	0.89
17	17	2.3	1.9e+03	-1.1	0.1	22	44	1319	1341	1316	1346	0.82

Sequence Information

Coding Sequence: ATGCCCAAGGCGAGAACCCCTACAGAGAGCACCCTGACGGCGGGCAGAACGGCGGCGGAcaccccggcggcgagcaccccggcggcgagcaccccCCTGGCAGGGAGCACCTCCACGGCGAGCGCCTTCGCCTGCGAGAAGTGCGACCTCTGCTTTACCAGCTTCCCGCTGATGGACCAGCATCAGCGCTCAGGCAGATGCATGGCCGAGATCAGACGGCGGCGAGCGTGCAGCGGACCTgggggcgctggcgccgggcgggcgggaggagatgTGGCAAAGGAAGACGAgctggtggtggtagaggaggTGGCGCAGGTAAAAGAAGAGCAAGCAGACGACCCGCCAGCGATAAAGGAAGAGCTGCTTCAAGGAGAGGACCCGCCTGTTGTAATGGGAGAGCAGCTCCAAGAAAAGGAGCCGCCCGTGATAGAAAAAGAGCAGCTTCAAGGAGAGGACACGCCGGTTGTAATGGGAAAGCAGCTCCAAGAAAAGGAGCCGCCCGTGATAAAGGAAGAGCAGCTTCAAGGAGAGGACCCGCCGGTTGTAACGGGAGAGCAGCTCCAAGAAAAGGAGCCGCCCGTGATAAAGGAAGAGCAGCTTCAAGGAGAGGACCCGCCGGTTGTAACGGGAGAGCAGCTCCAAGAAGAGGAGCCGCCCGTGATAAAGGAAGAGCAGCTTCAAGGAGAGGGGCCGCCAGTGATGAGAGAAGACCCGCCACAGGTCGAAGGGCcgccaaaaataaaagaagagccGGTAGTGCAAGAAGATCCGCCACAGATCAAAAAGGAGCAGCTGCAGGAAGAAGAGTGGCCGCGGGGAAGGGAAACGCCGCCAAAGATAAAAGAGGAGCCGCCAGAAGTAGAAGAGTGGTCGACGAAAGAAGACCAGCTGCCGGGGGGAGGAGACCGGCGAGAGGCAGCGGGAGAGCAGCGAcagggaggcgaggggccgcCGAGGGTAGAAGAGTTGCCACAGACGGCTGAGCatcaggaggtggtggtggtggactcGCCCCAAGGAGAAGGTTCGCCCCGAGTAGAAGACTCGCCCCATGGAGAGGAGCAGCTCCCCGGAGGCAGTGGCCAGGACCAGCGCAACAGCCCTGCAACCgtggcgagcgggagcgaggccgagcaggccaggccccaCCGCTGTGAGACTTGCGCGACGGCCTTCAAGAGCAAGGCCCACCTGCGAGAGCACATGGTGGTCCACTCCGAGGAGAGGCCCCACACCTGCGAGACCTGCGGCGCGACCTTCAAACTGGTGGGCAACTTCCGACAACACATGCGGCTGCACTCTGGCGAGAGACCCCACGCTTGCAGCACCTGCGACGCGGCCTTCAAGACGGCGTCTCACCTCCGCGCTCACATGCGGGCCCATACTGGAGACAAACCTTACACCTGCGAGACCTGCGGCGCGGCCTACAAGAGAGCGTCCCACCTCCGTGTTCACTTGCGGAGTCATACTGGCACGACCCGCGAGATATCCGAGCCCGAGTTGGAGGACGGCGCTGACAACCCCTCCTGCGACGTCTGCCGGAAGGACTGGGAGGGCGACTGCCCGCAGCACGGACCCCCGCTGGTCATCGCCGACACCGAGgtcgccgtcggccacccCAAGCGGGCGCTGCTCTCGGTGCCGCCCCAGCTCGTCGTGAagaccagcagcgcccccggcgccgccggccgctccgtCTGGGCCCGGGAGGCGGTGCCCAGGAGGGCGCGCTTCGGGCCGTACAAGGGCGACTTCCCCCCGGCCCACAAGCAGAACCGCCGCTTGTCCGTGACGGAGATGGCCTCGTCCAACTGGATGAGGTTCGTGAACGTCGCAGGCCACCCCGAGGAGGGCAACGTCGTCGCCTCCTGGTCCGAGGGCGGCCTGTACTTCGGCACGGTGCGCGACATCCCCGCCGGCGCGGAACTGCTCCTCTGCGACGACAAGCAAAGGCCATGGCTTGCGGCGAAGCTCCGCGCCGATGCCCCGGCACCCGGCCCTCCCGCGCGGGCCAGGACTCGCCTGATGACCTCCGCGGCCGCTCTCGCGGCCTCCGGCACTGACCCTCCCGCGGGCCTTCCCGCGGCCTCCAGCACGGGCCCTCGCGCCGGCCCTCTTGCAGCCCGCAAAACTGGCCCTCTTACAGCCCCTGGAACTAGCCCGCTTGCGGCCCCCAAGACTGACCATCTTACGGCTCCTGGAACTAGCCCCCCTGCGACCCCCAAGACTGGGCCCTATACGGCCCCTGGAGCTAGCCCTCCTACGATACCCTGCACTGGCTCTCCTGCGGCCCCCAGAACTGGAGCTCCTGCGACCCCTGGAACTGCAGCCCCTGCGACCCCCGGCACTGGTCCTCTTGTGGCCCCTGGAACTGGCCCTCCTGCGGCTCCTGGAACTGGAGCTCCTGCGGCCCCTGGAACTGCAGCCCCTGCGACCCCCGGCACTGGCCCTCTTGTGGCCCCTGGAACTGGCCCTTCTGCGGCTCGTGGAACTGGCCCTCCTGCGGCCCCTGGAACTGGCCCCTCCAAGGCGGGCATCTTCCCCTGCGAGAAGTGCGACCTGTGCTACGccagcgccgagcaccgcgacaAGCACCGGCGCTCCGGCAGGTGCAGGGGCGAGTATAacagcacgccggcggcgcggggcctgcaAAAGCTTTCAACTGTCGCAAAACTGCCCAAAAAGGGTGAGCTGCCTCAAGCGCGAGGAGAGCAGGCACTGCCAAGAGAcgcgccggctggggctgggaaaAAAGAGTCGCCTCCAGCAAGAGGAGAGCCGCCCAAGGTCACTGCAAAGCCAGGGAAGGAGGGTGAAGAGCAGCATCAGGGTGCCGCAGCCAAGACGATCCTCGAACCGCGCCAGCACCGCTGCGAGACGTGCGGGGCGTCCTTCACGCGGGCGACCCTGCTCCGGGACCACAGGCGGGTGCACACCGGGGAGAGGCCGTACGTCTGCCACACCTGCGGGGCGAGCTTCAAGCAGGCGGGCAACCTGCGCCACCACATCCAGgtgcacacgggcgagaagccccaCCCGTGCAAGGTGTGCGGGTCCAACTTCAAGCGGCCGACCCACCTGCGTGCCCACATGCGcatccacaccggagagaagccttacaAGTGCGACACCTGCAGCGCCGCCTTCTCCGAGAACAGCCTGCTCCACCGGCACAAGAGGACTCACACCGGGGAAAAGCCTTACGTGTGCCAGATGTGCGGCGCGGGCTTCACCGAGAGCGGCGCTCTCAGCAGGCACACGAGGACGCACACCGGAGAGAGGCCCTACAGCTGCCCGACCTGTTTCAAAGGTTTCGCCGACAATGCCAATCTTCAAACGCACATgaggacccacactggtgacAAACCCTACCGCTGCAAGACGTGCGGCGCGGGCTTCTCGAGGAGTTCCAATCTCCGTGCGCACGTGAAGACGCACAGTGGCGTCAAACCCCACGTCTGCGAGACCTGTGGCTCCGGTTTCACTACGGCTTCCAATCTTCGAACCCATATGAGGAGACACACTGGGGTTAAACCCTACAAGTGCGAGACGTGCGGCAAAGGTTTCTCTCACAGGAATAATCTGCACACCCATGTGAGGATTCACACCGGCGACAAACCGTTCGTCTGCGACACTTGTGGCTCACGGTTTGCCGACAAGGCCAATCTCCGCACACACATGAGGATACATACCGGTGACAAACCTCACAGCTGCTCGACCTGTGGCGTAAGTTTCACCAACAGTTCAAATCTCCGCGTGCACATGAggacgcacacgggcgagaggCCCTTCAGCTGTCCGACCTGCAGCGCTAGTTTCTCTAACAGCACCGTCCTCTGCACACACATGAGAACACACACTGGTGACAAGCCTTACAGTTGTAAGACATGTGGCGTCGGTTTCTCTCAGAGTGGTGCTCTTCGCAGACACATGAAGGTACACACAGGTGAAAAGTCTTTTAGCTGTGAGATCTGCCACACTACGTTTTCCAGGATGGAATATCTACGCTCTCACAATAATTCCTTCCACCAAGATACCGAAAAAGTTGTCCCTTAG
Protein Sequence: MPKARTPTESTLTAGRTAADTPAASTPAASTPLAGSTSTASAFACEKCDLCFTSFPLMDQHQRSGRCMAEIRRRRACSGPGGAGAGRAGGDVAKEDELVVVEEVAQVKEEQADDPPAIKEELLQGEDPPVVMGEQLQEKEPPVIEKEQLQGEDTPVVMGKQLQEKEPPVIKEEQLQGEDPPVVTGEQLQEKEPPVIKEEQLQGEDPPVVTGEQLQEEEPPVIKEEQLQGEGPPVMREDPPQVEGPPKIKEEPVVQEDPPQIKKEQLQEEEWPRGRETPPKIKEEPPEVEEWSTKEDQLPGGGDRREAAGEQRQGGEGPPRVEELPQTAEHQEVVVVDSPQGEGSPRVEDSPHGEEQLPGGSGQDQRNSPATVASGSEAEQARPHRCETCATAFKSKAHLREHMVVHSEERPHTCETCGATFKLVGNFRQHMRLHSGERPHACSTCDAAFKTASHLRAHMRAHTGDKPYTCETCGAAYKRASHLRVHLRSHTGTTREISEPELEDGADNPSCDVCRKDWEGDCPQHGPPLVIADTEVAVGHPKRALLSVPPQLVVKTSSAPGAAGRSVWAREAVPRRARFGPYKGDFPPAHKQNRRLSVTEMASSNWMRFVNVAGHPEEGNVVASWSEGGLYFGTVRDIPAGAELLLCDDKQRPWLAAKLRADAPAPGPPARARTRLMTSAAALAASGTDPPAGLPAASSTGPRAGPLAARKTGPLTAPGTSPLAAPKTDHLTAPGTSPPATPKTGPYTAPGASPPTIPCTGSPAAPRTGAPATPGTAAPATPGTGPLVAPGTGPPAAPGTGAPAAPGTAAPATPGTGPLVAPGTGPSAARGTGPPAAPGTGPSKAGIFPCEKCDLCYASAEHRDKHRRSGRCRGEYNSTPAARGLQKLSTVAKLPKKGELPQARGEQALPRDAPAGAGKKESPPARGEPPKVTAKPGKEGEEQHQGAAAKTILEPRQHRCETCGASFTRATLLRDHRRVHTGERPYVCHTCGASFKQAGNLRHHIQVHTGEKPHPCKVCGSNFKRPTHLRAHMRIHTGEKPYKCDTCSAAFSENSLLHRHKRTHTGEKPYVCQMCGAGFTESGALSRHTRTHTGERPYSCPTCFKGFADNANLQTHMRTHTGDKPYRCKTCGAGFSRSSNLRAHVKTHSGVKPHVCETCGSGFTTASNLRTHMRRHTGVKPYKCETCGKGFSHRNNLHTHVRIHTGDKPFVCDTCGSRFADKANLRTHMRIHTGDKPHSCSTCGVSFTNSSNLRVHMRTHTGERPFSCPTCSASFSNSTVLCTHMRTHTGDKPYSCKTCGVGFSQSGALRRHMKVHTGEKSFSCEICHTTFSRMEYLRSHNNSFHQDTEKVVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00733341;
90% Identity: iTF_00733341;
80% Identity: iTF_00733341;