Focc001134.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Frankliniella occidentalis
Gene Symbol
-
Assembly
None
Location
ML763221.1:393014-400225[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.042 2.3 8.8 1.1 1 22 43 64 43 64 0.93
2 20 0.00033 0.018 15.4 2.2 1 23 384 406 384 406 0.97
3 20 0.00019 0.01 16.1 1.6 1 23 412 434 412 434 0.98
4 20 3.7e-06 0.0002 21.5 1.4 1 23 440 462 440 462 0.96
5 20 1.5e-06 7.9e-05 22.8 0.9 1 23 468 490 468 490 0.99
6 20 0.068 3.7 8.1 1.7 1 22 848 869 848 869 0.95
7 20 1.1e-05 0.00059 20.0 1.4 1 23 958 980 958 980 0.98
8 20 6.5e-07 3.5e-05 23.9 1.7 1 23 986 1008 986 1008 0.98
9 20 3.3e-06 0.00018 21.7 2.6 1 23 1014 1036 1014 1036 0.97
10 20 0.00011 0.006 16.9 2.7 1 23 1042 1064 1042 1064 0.99
11 20 2.7e-05 0.0015 18.8 0.1 1 23 1070 1092 1070 1092 0.99
12 20 2.3e-07 1.2e-05 25.3 0.5 1 23 1098 1120 1098 1120 0.99
13 20 1.8e-07 1e-05 25.6 0.7 1 23 1126 1148 1126 1148 0.99
14 20 1.3e-06 7.1e-05 22.9 1.5 1 23 1154 1176 1154 1176 0.98
15 20 5.3e-06 0.00029 21.0 4.4 1 23 1182 1204 1182 1204 0.99
16 20 1.2e-06 6.4e-05 23.1 0.3 1 23 1210 1232 1210 1232 0.98
17 20 8.1e-08 4.4e-06 26.7 2.4 1 23 1238 1260 1238 1260 0.98
18 20 4e-05 0.0022 18.3 2.5 1 23 1266 1288 1266 1288 0.98
19 20 7.4e-07 4e-05 23.7 0.3 1 23 1294 1316 1294 1316 0.98
20 20 0.0011 0.057 13.8 3.6 1 23 1322 1345 1322 1345 0.95

Sequence Information

Coding Sequence
ATGCCCAAGGCGAGAACCCCTACAGAGAGCACCCTGACGGCGGGCAGAACGGCGGCGGAcaccccggcggcgagcaccccggcggcgagcaccccCCTGGCAGGGAGCACCTCCACGGCGAGCGCCTTCGCCTGCGAGAAGTGCGACCTCTGCTTTACCAGCTTCCCGCTGATGGACCAGCATCAGCGCTCAGGCAGATGCATGGCCGAGATCAGACGGCGGCGAGCGTGCAGCGGACCTgggggcgctggcgccgggcgggcgggaggagatgTGGCAAAGGAAGACGAgctggtggtggtagaggaggTGGCGCAGGTAAAAGAAGAGCAAGCAGACGACCCGCCAGCGATAAAGGAAGAGCTGCTTCAAGGAGAGGACCCGCCTGTTGTAATGGGAGAGCAGCTCCAAGAAAAGGAGCCGCCCGTGATAGAAAAAGAGCAGCTTCAAGGAGAGGACACGCCGGTTGTAATGGGAAAGCAGCTCCAAGAAAAGGAGCCGCCCGTGATAAAGGAAGAGCAGCTTCAAGGAGAGGACCCGCCGGTTGTAACGGGAGAGCAGCTCCAAGAAAAGGAGCCGCCCGTGATAAAGGAAGAGCAGCTTCAAGGAGAGGACCCGCCGGTTGTAACGGGAGAGCAGCTCCAAGAAGAGGAGCCGCCCGTGATAAAGGAAGAGCAGCTTCAAGGAGAGGGGCCGCCAGTGATGAGAGAAGACCCGCCACAGGTCGAAGGGCcgccaaaaataaaagaagagccGGTAGTGCAAGAAGATCCGCCACAGATCAAAAAGGAGCAGCTGCAGGAAGAAGAGTGGCCGCGGGGAAGGGAAACGCCGCCAAAGATAAAAGAGGAGCCGCCAGAAGTAGAAGAGTGGTCGACGAAAGAAGACCAGCTGCCGGGGGGAGGAGACCGGCGAGAGGCAGCGGGAGAGCAGCGAcagggaggcgaggggccgcCGAGGGTAGAAGAGTTGCCACAGACGGCTGAGCatcaggaggtggtggtggtggactcGCCCCAAGGAGAAGGTTCGCCCCGAGTAGAAGACTCGCCCCATGGAGAGGAGCAGCTCCCCGGAGGCAGTGGCCAGGACCAGCGCAACAGCCCTGCAACCgtggcgagcgggagcgaggccgagcaggccaggccccaCCGCTGTGAGACTTGCGCGACGGCCTTCAAGAGCAAGGCCCACCTGCGAGAGCACATGGTGGTCCACTCCGAGGAGAGGCCCCACACCTGCGAGACCTGCGGCGCGACCTTCAAACTGGTGGGCAACTTCCGACAACACATGCGGCTGCACTCTGGCGAGAGACCCCACGCTTGCAGCACCTGCGACGCGGCCTTCAAGACGGCGTCTCACCTCCGCGCTCACATGCGGGCCCATACTGGAGACAAACCTTACACCTGCGAGACCTGCGGCGCGGCCTACAAGAGAGCGTCCCACCTCCGTGTTCACTTGCGGAGTCATACTGGCACGACCCGCGAGATATCCGAGCCCGAGTTGGAGGACGGCGCTGACAACCCCTCCTGCGACGTCTGCCGGAAGGACTGGGAGGGCGACTGCCCGCAGCACGGACCCCCGCTGGTCATCGCCGACACCGAGgtcgccgtcggccacccCAAGCGGGCGCTGCTCTCGGTGCCGCCCCAGCTCGTCGTGAagaccagcagcgcccccggcgccgccggccgctccgtCTGGGCCCGGGAGGCGGTGCCCAGGAGGGCGCGCTTCGGGCCGTACAAGGGCGACTTCCCCCCGGCCCACAAGCAGAACCGCCGCTTGTCCGTGACGGAGATGGCCTCGTCCAACTGGATGAGGTTCGTGAACGTCGCAGGCCACCCCGAGGAGGGCAACGTCGTCGCCTCCTGGTCCGAGGGCGGCCTGTACTTCGGCACGGTGCGCGACATCCCCGCCGGCGCGGAACTGCTCCTCTGCGACGACAAGCAAAGGCCATGGCTTGCGGCGAAGCTCCGCGCCGATGCCCCGGCACCCGGCCCTCCCGCGCGGGCCAGGACTCGCCTGATGACCTCCGCGGCCGCTCTCGCGGCCTCCGGCACTGACCCTCCCGCGGGCCTTCCCGCGGCCTCCAGCACGGGCCCTCGCGCCGGCCCTCTTGCAGCCCGCAAAACTGGCCCTCTTACAGCCCCTGGAACTAGCCCGCTTGCGGCCCCCAAGACTGACCATCTTACGGCTCCTGGAACTAGCCCCCCTGCGACCCCCAAGACTGGGCCCTATACGGCCCCTGGAGCTAGCCCTCCTACGATACCCTGCACTGGCTCTCCTGCGGCCCCCAGAACTGGAGCTCCTGCGACCCCTGGAACTGCAGCCCCTGCGACCCCCGGCACTGGTCCTCTTGTGGCCCCTGGAACTGGCCCTCCTGCGGCTCCTGGAACTGGAGCTCCTGCGGCCCCTGGAACTGCAGCCCCTGCGACCCCCGGCACTGGCCCTCTTGTGGCCCCTGGAACTGGCCCTTCTGCGGCTCGTGGAACTGGCCCTCCTGCGGCCCCTGGAACTGGCCCCTCCAAGGCGGGCATCTTCCCCTGCGAGAAGTGCGACCTGTGCTACGccagcgccgagcaccgcgacaAGCACCGGCGCTCCGGCAGGTGCAGGGGCGAGTATAacagcacgccggcggcgcggggcctgcaAAAGCTTTCAACTGTCGCAAAACTGCCCAAAAAGGGTGAGCTGCCTCAAGCGCGAGGAGAGCAGGCACTGCCAAGAGAcgcgccggctggggctgggaaaAAAGAGTCGCCTCCAGCAAGAGGAGAGCCGCCCAAGGTCACTGCAAAGCCAGGGAAGGAGGGTGAAGAGCAGCATCAGGGTGCCGCAGCCAAGACGATCCTCGAACCGCGCCAGCACCGCTGCGAGACGTGCGGGGCGTCCTTCACGCGGGCGACCCTGCTCCGGGACCACAGGCGGGTGCACACCGGGGAGAGGCCGTACGTCTGCCACACCTGCGGGGCGAGCTTCAAGCAGGCGGGCAACCTGCGCCACCACATCCAGgtgcacacgggcgagaagccccaCCCGTGCAAGGTGTGCGGGTCCAACTTCAAGCGGCCGACCCACCTGCGTGCCCACATGCGcatccacaccggagagaagccttacaAGTGCGACACCTGCAGCGCCGCCTTCTCCGAGAACAGCCTGCTCCACCGGCACAAGAGGACTCACACCGGGGAAAAGCCTTACGTGTGCCAGATGTGCGGCGCGGGCTTCACCGAGAGCGGCGCTCTCAGCAGGCACACGAGGACGCACACCGGAGAGAGGCCCTACAGCTGCCCGACCTGTTTCAAAGGTTTCGCCGACAATGCCAATCTTCAAACGCACATgaggacccacactggtgacAAACCCTACCGCTGCAAGACGTGCGGCGCGGGCTTCTCGAGGAGTTCCAATCTCCGTGCGCACGTGAAGACGCACAGTGGCGTCAAACCCCACGTCTGCGAGACCTGTGGCTCCGGTTTCACTACGGCTTCCAATCTTCGAACCCATATGAGGAGACACACTGGGGTTAAACCCTACAAGTGCGAGACGTGCGGCAAAGGTTTCTCTCACAGGAATAATCTGCACACCCATGTGAGGATTCACACCGGCGACAAACCGTTCGTCTGCGACACTTGTGGCTCACGGTTTGCCGACAAGGCCAATCTCCGCACACACATGAGGATACATACCGGTGACAAACCTCACAGCTGCTCGACCTGTGGCGTAAGTTTCACCAACAGTTCAAATCTCCGCGTGCACATGAggacgcacacgggcgagaggCCCTTCAGCTGTCCGACCTGCAGCGCTAGTTTCTCTAACAGCACCGTCCTCTGCACACACATGAGAACACACACTGGTGACAAGCCTTACAGTTGTAAGACATGTGGCGTCGGTTTCTCTCAGAGTGGTGCTCTTCGCAGACACATGAAGGTACACACAGGTGAAAAGTCTTTTAGCTGTGAGATCTGCCACACTACGTTTTCCAGGATGGAATATCTACGCTCTCACAATAATTCCTTCCACCAAGATACCGAAAAAGTTGTCCCTTAG
Protein Sequence
MPKARTPTESTLTAGRTAADTPAASTPAASTPLAGSTSTASAFACEKCDLCFTSFPLMDQHQRSGRCMAEIRRRRACSGPGGAGAGRAGGDVAKEDELVVVEEVAQVKEEQADDPPAIKEELLQGEDPPVVMGEQLQEKEPPVIEKEQLQGEDTPVVMGKQLQEKEPPVIKEEQLQGEDPPVVTGEQLQEKEPPVIKEEQLQGEDPPVVTGEQLQEEEPPVIKEEQLQGEGPPVMREDPPQVEGPPKIKEEPVVQEDPPQIKKEQLQEEEWPRGRETPPKIKEEPPEVEEWSTKEDQLPGGGDRREAAGEQRQGGEGPPRVEELPQTAEHQEVVVVDSPQGEGSPRVEDSPHGEEQLPGGSGQDQRNSPATVASGSEAEQARPHRCETCATAFKSKAHLREHMVVHSEERPHTCETCGATFKLVGNFRQHMRLHSGERPHACSTCDAAFKTASHLRAHMRAHTGDKPYTCETCGAAYKRASHLRVHLRSHTGTTREISEPELEDGADNPSCDVCRKDWEGDCPQHGPPLVIADTEVAVGHPKRALLSVPPQLVVKTSSAPGAAGRSVWAREAVPRRARFGPYKGDFPPAHKQNRRLSVTEMASSNWMRFVNVAGHPEEGNVVASWSEGGLYFGTVRDIPAGAELLLCDDKQRPWLAAKLRADAPAPGPPARARTRLMTSAAALAASGTDPPAGLPAASSTGPRAGPLAARKTGPLTAPGTSPLAAPKTDHLTAPGTSPPATPKTGPYTAPGASPPTIPCTGSPAAPRTGAPATPGTAAPATPGTGPLVAPGTGPPAAPGTGAPAAPGTAAPATPGTGPLVAPGTGPSAARGTGPPAAPGTGPSKAGIFPCEKCDLCYASAEHRDKHRRSGRCRGEYNSTPAARGLQKLSTVAKLPKKGELPQARGEQALPRDAPAGAGKKESPPARGEPPKVTAKPGKEGEEQHQGAAAKTILEPRQHRCETCGASFTRATLLRDHRRVHTGERPYVCHTCGASFKQAGNLRHHIQVHTGEKPHPCKVCGSNFKRPTHLRAHMRIHTGEKPYKCDTCSAAFSENSLLHRHKRTHTGEKPYVCQMCGAGFTESGALSRHTRTHTGERPYSCPTCFKGFADNANLQTHMRTHTGDKPYRCKTCGAGFSRSSNLRAHVKTHSGVKPHVCETCGSGFTTASNLRTHMRRHTGVKPYKCETCGKGFSHRNNLHTHVRIHTGDKPFVCDTCGSRFADKANLRTHMRIHTGDKPHSCSTCGVSFTNSSNLRVHMRTHTGERPFSCPTCSASFSNSTVLCTHMRTHTGDKPYSCKTCGVGFSQSGALRRHMKVHTGEKSFSCEICHTTFSRMEYLRSHNNSFHQDTEKVVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00733660;
90% Identity
iTF_00733660;
80% Identity
iTF_00733660;