Basic Information

Insect: Frankliniella occidentalis
Gene Symbol: set-17
Assembly: None
Location: ML763221.1:388941-392578[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0064 5.3 7.1 0.0 21 47 479 505 459 510 0.91

2 11 0.01 8.5 6.5 0.1 21 44 507 530 505 534 0.90

3 11 7.5e-05 0.062 13.3 0.1 21 46 535 560 531 563 0.91

4 11 0.035 29 4.8 0.2 21 44 563 586 561 590 0.91

5 11 0.037 31 4.7 0.1 22 45 592 615 587 622 0.86

6 11 0.15 1.2e+02 2.8 0.1 21 45 619 643 614 650 0.83

7 11 0.064 53 3.9 0.0 22 45 648 671 642 678 0.83

8 11 0.64 5.3e+02 0.7 0.1 21 43 675 697 671 702 0.79

9 11 0.061 50 4.0 0.6 22 46 704 728 695 735 0.72

10 11 0.43 3.6e+02 1.3 0.1 21 46 731 756 727 764 0.78

11 11 4.3 3.5e+03 -1.9 0.0 21 44 759 782 754 785 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0064	5.3	7.1	0.0	21	47	479	505	459	510	0.91
2	11	0.01	8.5	6.5	0.1	21	44	507	530	505	534	0.90
3	11	7.5e-05	0.062	13.3	0.1	21	46	535	560	531	563	0.91
4	11	0.035	29	4.8	0.2	21	44	563	586	561	590	0.91
5	11	0.037	31	4.7	0.1	22	45	592	615	587	622	0.86
6	11	0.15	1.2e+02	2.8	0.1	21	45	619	643	614	650	0.83
7	11	0.064	53	3.9	0.0	22	45	648	671	642	678	0.83
8	11	0.64	5.3e+02	0.7	0.1	21	43	675	697	671	702	0.79
9	11	0.061	50	4.0	0.6	22	46	704	728	695	735	0.72
10	11	0.43	3.6e+02	1.3	0.1	21	46	731	756	727	764	0.78
11	11	4.3	3.5e+03	-1.9	0.0	21	44	759	782	754	785	0.83

Sequence Information

Coding Sequence: ATGAGCGAAGATTTAAACGAATATGAGGAGATTAAATGTTATTTCTCCCCATCCGAGTGGGAAAAACTTAGCCACGACGAAataattgaaatgaaaaatgaaaagtggaAGTATGACACCATACGGCGCTGCGGCTGGACCACCAAGCCCCCCCTTTTCATGGCTCGAAATCCGCATCGCAAACGTCAGCAGCAGGAGACGTCTTTAGGGCCTTTAGGGGAGGGAGCGACGTTCCCGTCAGAGACGCGGAGCTGCCTTGGGGAACCCGTGGCACCTGATGAGGCACTGGCGCATCCTCCACCCTCAGCCCCATCCCCCGACCAGCCCGACGAGGGCGCAGCTCTCGGGCCGAGGTCGGAGGCCAGGATCATCCCCGAGCCCAGCATCCCCAGCGTCACCGAGCCCCGGGTTACCGAGcgcaccccacgccaccccaagcggggccggagccggaagaCCCAAGCGGAGTCCGTGGTGTTTGAGAACGACGGCCTCCTCTTCTGCGATGACTGCCAGGTGGAGTGGGAAGGCGACTGCCCGTTGCACGGACCTCTGCTGGTCGTCGCGGACACCGAGgtcgccgtcggccacccGGACCGTGCGCTGCTCACGGTGCCGCCCCAGCTCGCCGTGCTGGTCAGCAAGAtccccggcgcggggctgggcgtctGGACCCGGGAGGCGGTGCCCAGGAGGGTGCGCTTCGGGCCGTACGAGGGCGACACGGTGCCGGCCGACCAGGAGACGGGCTACGGCTGGGAGATTCTTCGCGGCGGCAAGCGGACCCACTGCGTCGACGCGCTCGACATGACGACGTCCAACTGGATGCGGTTCGTCAACTGCGCGAGGCACTCCGGGGAGGAGAACGTCGTGCCGTACCAGTTGGGGGGCCGGCTGTACTACCGGACGGTGCGCGACGTGCCCGCCAACACGGAGCTGCTGACGTGGTACGGCGACTCGTACGCGCGGGACCTCGGCATCAGCCCCGGGGCCTACAGGGACCCCGCGCGGGACACGCGCACCCTCAcCGGGATCTTCCCTtgcgggcgctgcgcgctgtGCTTCGTCAGCCCCCTGCTCCAGGCGCAGCATCACCGCAGCGGCAGATGCTGGGCGGAGGCCAAGCGCCGGCGGGGGTGCGCGTCGACGCAGGCGGTGGGAGAGCAGCCACCGGGAGAAGGAGCGCGGCGACAGGGTGGTGAAGAGCGGCGACAGGGTGGTGAAGAGCAGCCActgggaggagagcggcggcggggtggtgaagAGCAGCCACAGGGGGAAGTAGAGCAACCACCAGGAGAAGATGAGCAGACACGGGGAGACCAAGGGCAAACACTGGGAGAAGAAGAGCAGCGACAGAGGGGTGAACGGCAGCCACCGGGAGGAGTACAGCAACCTGTACTTGACCGGCGCGAGCACATGGTGGTCCTCTCCGAGGAGAGGCCCCACACCTGCGAGACCTGCGGCGCGACCTTCAAACTGGCAGGCAAACTCCGGCATCACATGTGGCTGCACTCTGATGAGAGACCCTTCGCTTGCAGCACCTGCGAAGCGGTCTTCAAGAGCAAGGCCCATCTGCGCGAGCACATGGTGGTCCACTCCGAGGAGAGGCCCCACACCTGCGAGACCTGCGGCGCGGCCTTCAAACTGGTGGGCAACCTCCGGCGACACATGCGGCTGCACTCTGGCGAGAGACCCCACGCTTGCAGCACCTGCGACGCGGCCTTCAAGAAGGCGTCTCACCTCCGCGCTCACGTCCGGGCCCATACTGGAGACAAACCTTACACCTGCGAGACCTGCGGTGCGGCCTACAAGAGAGCGTCCCACCTCCGTGTTCATATGCGGAGTCATACTGGTGAGAAACCGTACAAATGTCAGACCTGTCCGGCTAGTTTCTTTGAAAGTGCGTCTCTCGCGAGACACACGAGAACTCACTCGGGTGATAAACCTTACAGCTGTGAGAGCTGTGGCCTTACTTTCTCTGACAGTGGCAATCTCCGAAAACATGTAATgacacacaccggtgagaaGCCGTTCAAGTGTCACATCTGCGGCGCTTGTTTCGTAGATGGTGATGCCCGTCGCACACATATTCGGACTCACACTGGGGAAAGACCGTACCGTTGTGAGACCTGTGGTGTATGTTTCGCTGACAGGGGCAATCTCCAGAGGCACTTGAGgtcacacactggtgaaaagcctcaCAAATGTCAGACCTGTGGCATTAGTTATACTTCGAGTAGCAGTCTTCGCGtgcacatgaggacacacactggtgaaaaaccctTTTCTTGCCAGACCTGTGGTAAAAGTTTTACCTCCAGTTCGGGTCTTGGGAAACACATGCAGACTCACGGAGATAAGAAGTCTTACAGGTGTCTGAGCTGTGATGCTTCCTTTACTAGAAAGTATAATCTTTGTGCACACGTGAAGAAGAATCATAGTGAAACCCAGTAA
Protein Sequence: MSEDLNEYEEIKCYFSPSEWEKLSHDEIIEMKNEKWKYDTIRRCGWTTKPPLFMARNPHRKRQQQETSLGPLGEGATFPSETRSCLGEPVAPDEALAHPPPSAPSPDQPDEGAALGPRSEARIIPEPSIPSVTEPRVTERTPRHPKRGRSRKTQAESVVFENDGLLFCDDCQVEWEGDCPLHGPLLVVADTEVAVGHPDRALLTVPPQLAVLVSKIPGAGLGVWTREAVPRRVRFGPYEGDTVPADQETGYGWEILRGGKRTHCVDALDMTTSNWMRFVNCARHSGEENVVPYQLGGRLYYRTVRDVPANTELLTWYGDSYARDLGISPGAYRDPARDTRTLTGIFPCGRCALCFVSPLLQAQHHRSGRCWAEAKRRRGCASTQAVGEQPPGEGARRQGGEERRQGGEEQPLGGERRRGGEEQPQGEVEQPPGEDEQTRGDQGQTLGEEEQRQRGERQPPGGVQQPVLDRREHMVVLSEERPHTCETCGATFKLAGKLRHHMWLHSDERPFACSTCEAVFKSKAHLREHMVVHSEERPHTCETCGAAFKLVGNLRRHMRLHSGERPHACSTCDAAFKKASHLRAHVRAHTGDKPYTCETCGAAYKRASHLRVHMRSHTGEKPYKCQTCPASFFESASLARHTRTHSGDKPYSCESCGLTFSDSGNLRKHVMTHTGEKPFKCHICGACFVDGDARRTHIRTHTGERPYRCETCGVCFADRGNLQRHLRSHTGEKPHKCQTCGISYTSSSSLRVHMRTHTGEKPFSCQTCGKSFTSSSGLGKHMQTHGDKKSYRCLSCDASFTRKYNLCAHVKKNHSETQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00733356;
90% Identity: iTF_00733356;
80% Identity: iTF_00733356;