Focc001125.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Frankliniella occidentalis
Gene Symbol
set-17
Assembly
None
Location
ML763221.1:388941-392578[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 6.2 3.4e+02 1.9 0.6 1 21 346 366 346 367 0.89
2 13 0.0019 0.1 13.0 1.4 1 20 483 502 483 505 0.95
3 13 4.4e-05 0.0024 18.1 0.5 1 23 511 533 511 533 0.96
4 13 1.4e-05 0.00078 19.6 0.7 1 23 539 561 539 561 0.98
5 13 4.4e-05 0.0024 18.1 1.2 1 23 567 589 567 589 0.96
6 13 2.3e-07 1.2e-05 25.3 1.0 1 23 595 617 595 617 0.99
7 13 4.3e-05 0.0023 18.1 0.6 1 23 623 645 623 645 0.99
8 13 5.2e-07 2.8e-05 24.2 0.4 1 23 651 673 651 673 0.98
9 13 8e-05 0.0044 17.3 2.1 1 23 679 701 679 701 0.99
10 13 2e-07 1.1e-05 25.5 1.5 1 23 707 729 707 729 0.99
11 13 3e-07 1.7e-05 24.9 2.7 1 23 735 757 735 757 0.98
12 13 1.4e-07 7.8e-06 26.0 1.2 1 23 763 785 763 785 0.98
13 13 5.3e-05 0.0029 17.9 3.4 1 23 791 814 791 814 0.97

Sequence Information

Coding Sequence
ATGAGCGAAGATTTAAACGAATATGAGGAGATTAAATGTTATTTCTCCCCATCCGAGTGGGAAAAACTTAGCCACGACGAAataattgaaatgaaaaatgaaaagtggaAGTATGACACCATACGGCGCTGCGGCTGGACCACCAAGCCCCCCCTTTTCATGGCTCGAAATCCGCATCGCAAACGTCAGCAGCAGGAGACGTCTTTAGGGCCTTTAGGGGAGGGAGCGACGTTCCCGTCAGAGACGCGGAGCTGCCTTGGGGAACCCGTGGCACCTGATGAGGCACTGGCGCATCCTCCACCCTCAGCCCCATCCCCCGACCAGCCCGACGAGGGCGCAGCTCTCGGGCCGAGGTCGGAGGCCAGGATCATCCCCGAGCCCAGCATCCCCAGCGTCACCGAGCCCCGGGTTACCGAGcgcaccccacgccaccccaagcggggccggagccggaagaCCCAAGCGGAGTCCGTGGTGTTTGAGAACGACGGCCTCCTCTTCTGCGATGACTGCCAGGTGGAGTGGGAAGGCGACTGCCCGTTGCACGGACCTCTGCTGGTCGTCGCGGACACCGAGgtcgccgtcggccacccGGACCGTGCGCTGCTCACGGTGCCGCCCCAGCTCGCCGTGCTGGTCAGCAAGAtccccggcgcggggctgggcgtctGGACCCGGGAGGCGGTGCCCAGGAGGGTGCGCTTCGGGCCGTACGAGGGCGACACGGTGCCGGCCGACCAGGAGACGGGCTACGGCTGGGAGATTCTTCGCGGCGGCAAGCGGACCCACTGCGTCGACGCGCTCGACATGACGACGTCCAACTGGATGCGGTTCGTCAACTGCGCGAGGCACTCCGGGGAGGAGAACGTCGTGCCGTACCAGTTGGGGGGCCGGCTGTACTACCGGACGGTGCGCGACGTGCCCGCCAACACGGAGCTGCTGACGTGGTACGGCGACTCGTACGCGCGGGACCTCGGCATCAGCCCCGGGGCCTACAGGGACCCCGCGCGGGACACGCGCACCCTCAcCGGGATCTTCCCTtgcgggcgctgcgcgctgtGCTTCGTCAGCCCCCTGCTCCAGGCGCAGCATCACCGCAGCGGCAGATGCTGGGCGGAGGCCAAGCGCCGGCGGGGGTGCGCGTCGACGCAGGCGGTGGGAGAGCAGCCACCGGGAGAAGGAGCGCGGCGACAGGGTGGTGAAGAGCGGCGACAGGGTGGTGAAGAGCAGCCActgggaggagagcggcggcggggtggtgaagAGCAGCCACAGGGGGAAGTAGAGCAACCACCAGGAGAAGATGAGCAGACACGGGGAGACCAAGGGCAAACACTGGGAGAAGAAGAGCAGCGACAGAGGGGTGAACGGCAGCCACCGGGAGGAGTACAGCAACCTGTACTTGACCGGCGCGAGCACATGGTGGTCCTCTCCGAGGAGAGGCCCCACACCTGCGAGACCTGCGGCGCGACCTTCAAACTGGCAGGCAAACTCCGGCATCACATGTGGCTGCACTCTGATGAGAGACCCTTCGCTTGCAGCACCTGCGAAGCGGTCTTCAAGAGCAAGGCCCATCTGCGCGAGCACATGGTGGTCCACTCCGAGGAGAGGCCCCACACCTGCGAGACCTGCGGCGCGGCCTTCAAACTGGTGGGCAACCTCCGGCGACACATGCGGCTGCACTCTGGCGAGAGACCCCACGCTTGCAGCACCTGCGACGCGGCCTTCAAGAAGGCGTCTCACCTCCGCGCTCACGTCCGGGCCCATACTGGAGACAAACCTTACACCTGCGAGACCTGCGGTGCGGCCTACAAGAGAGCGTCCCACCTCCGTGTTCATATGCGGAGTCATACTGGTGAGAAACCGTACAAATGTCAGACCTGTCCGGCTAGTTTCTTTGAAAGTGCGTCTCTCGCGAGACACACGAGAACTCACTCGGGTGATAAACCTTACAGCTGTGAGAGCTGTGGCCTTACTTTCTCTGACAGTGGCAATCTCCGAAAACATGTAATgacacacaccggtgagaaGCCGTTCAAGTGTCACATCTGCGGCGCTTGTTTCGTAGATGGTGATGCCCGTCGCACACATATTCGGACTCACACTGGGGAAAGACCGTACCGTTGTGAGACCTGTGGTGTATGTTTCGCTGACAGGGGCAATCTCCAGAGGCACTTGAGgtcacacactggtgaaaagcctcaCAAATGTCAGACCTGTGGCATTAGTTATACTTCGAGTAGCAGTCTTCGCGtgcacatgaggacacacactggtgaaaaaccctTTTCTTGCCAGACCTGTGGTAAAAGTTTTACCTCCAGTTCGGGTCTTGGGAAACACATGCAGACTCACGGAGATAAGAAGTCTTACAGGTGTCTGAGCTGTGATGCTTCCTTTACTAGAAAGTATAATCTTTGTGCACACGTGAAGAAGAATCATAGTGAAACCCAGTAA
Protein Sequence
MSEDLNEYEEIKCYFSPSEWEKLSHDEIIEMKNEKWKYDTIRRCGWTTKPPLFMARNPHRKRQQQETSLGPLGEGATFPSETRSCLGEPVAPDEALAHPPPSAPSPDQPDEGAALGPRSEARIIPEPSIPSVTEPRVTERTPRHPKRGRSRKTQAESVVFENDGLLFCDDCQVEWEGDCPLHGPLLVVADTEVAVGHPDRALLTVPPQLAVLVSKIPGAGLGVWTREAVPRRVRFGPYEGDTVPADQETGYGWEILRGGKRTHCVDALDMTTSNWMRFVNCARHSGEENVVPYQLGGRLYYRTVRDVPANTELLTWYGDSYARDLGISPGAYRDPARDTRTLTGIFPCGRCALCFVSPLLQAQHHRSGRCWAEAKRRRGCASTQAVGEQPPGEGARRQGGEERRQGGEEQPLGGERRRGGEEQPQGEVEQPPGEDEQTRGDQGQTLGEEEQRQRGERQPPGGVQQPVLDRREHMVVLSEERPHTCETCGATFKLAGKLRHHMWLHSDERPFACSTCEAVFKSKAHLREHMVVHSEERPHTCETCGAAFKLVGNLRRHMRLHSGERPHACSTCDAAFKKASHLRAHVRAHTGDKPYTCETCGAAYKRASHLRVHMRSHTGEKPYKCQTCPASFFESASLARHTRTHSGDKPYSCESCGLTFSDSGNLRKHVMTHTGEKPFKCHICGACFVDGDARRTHIRTHTGERPYRCETCGVCFADRGNLQRHLRSHTGEKPHKCQTCGISYTSSSSLRVHMRTHTGEKPFSCQTCGKSFTSSSGLGKHMQTHGDKKSYRCLSCDASFTRKYNLCAHVKKNHSETQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00733659;
90% Identity
iTF_00733659;
80% Identity
iTF_00733659;