Focc000466.1
Basic Information
- Insect
- Frankliniella occidentalis
- Gene Symbol
- -
- Assembly
- None
- Location
- ML763212.1:317420-339673[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.18 1.5e+02 2.5 0.1 22 45 7 30 4 33 0.88 2 10 1.1e-05 0.009 16.0 0.1 21 46 34 59 30 65 0.86 3 10 0.065 54 3.9 0.2 21 47 62 88 58 94 0.84 4 10 0.44 3.6e+02 1.3 0.1 22 46 119 143 100 150 0.78 5 10 0.011 9.3 6.4 0.1 22 46 147 171 142 177 0.83 6 10 0.028 23 5.1 0.1 21 48 174 201 170 206 0.89 7 10 0.016 13 5.9 0.2 21 45 203 227 198 233 0.87 8 10 0.014 12 6.0 0.0 22 46 288 312 283 318 0.83 9 10 0.036 30 4.7 0.1 21 45 315 339 311 346 0.88 10 10 0.027 22 5.1 0.3 22 45 344 367 339 370 0.88
Sequence Information
- Coding Sequence
- aTGAAGGGGCTCTCGACAGATCGGCCGTTCGAGTGCAACATCTGCCAAAAGAAATTCTCTAGAACTGACACCTTGCGTGATCATCTTCGAACACACACAGgcgaaaagcctttcgagtgcgcTATCTGCCGAAAGTCTTTTACCCAATCTGGGAATTTGCGTAAACATCTTCGaacacacacaggcgagaagccttttgagtgcgccGTCTGCCGAAAGTCTTTTGCCCGATCTGAACATTTGCAGGCTCATCTTCGAACACACACAGGCGataagccttttgagtgcgATGTTTGCCAAAAGAGGTTTGCCCAACCTGGACATTGGCAGACTCATCTTCGAACACACACAGGCGAAAAGTCTTTTGAGTGCAATGTTTGCCAAAAGAAGTTTTCTGAGAGTGGGCATCTAAGCAGACATTTCCGAATCCACACAGAAGAAAAGTCATTTGAGTGCGTCATCTGCCGGAAGTCTTTTACCCAATCTGGAACTTTGCGTGATCATCTTCGaacacacacaggcgagaagccttttgagtgtgcCGTCTGCCGAAAGTCTTTTGCCACATCTGGATCTTTGCGTGATCATGTTCGAACACACCACACAGACGataagccttttgagtgcgccGTCTGCCGAAAGTCTTTTGTCAAATCTGAATATTTGCGTAAACATCTTCGAACACACACAGGCGATAAGTCTTTTGAGTGTACCGTTTGCAAAAAGAAGTTTGCGCAACATGGGCACTGGCAGACTCATCTTCGaacacacacaggtgaaaagtCTTTTGAGTGCAATGTTTGCCAAAAGAAGTTTTCTGAGAGGGGGCAACTAAGCAGCCATTTCCGTATTCACACAGACGAAAAGTCATTTGAGTGCGTCATCTGCCGGAAGTCTTTTACCCAATCTGGAACTTTACGtgttcatctcagaacacacacaggcgagaagccttttgagtgtgcTGTCTGCCGAAAGTCTTTTGCCACGTCTGGAACTTTGCGTAAACATTTTCGAACACACAGAGGCGATaggccttttgagtgcaccATCTGCCGAAAGTCTTTTACCCGACCTGGAAATTTGCGTAGTCATCTTCGAACCCACCTCGACGACGACTAG
- Protein Sequence
- MKGLSTDRPFECNICQKKFSRTDTLRDHLRTHTGEKPFECAICRKSFTQSGNLRKHLRTHTGEKPFECAVCRKSFARSEHLQAHLRTHTGDKPFECDVCQKRFAQPGHWQTHLRTHTGEKSFECNVCQKKFSESGHLSRHFRIHTEEKSFECVICRKSFTQSGTLRDHLRTHTGEKPFECAVCRKSFATSGSLRDHVRTHHTDDKPFECAVCRKSFVKSEYLRKHLRTHTGDKSFECTVCKKKFAQHGHWQTHLRTHTGEKSFECNVCQKKFSERGQLSSHFRIHTDEKSFECVICRKSFTQSGTLRVHLRTHTGEKPFECAVCRKSFATSGTLRKHFRTHRGDRPFECTICRKSFTRPGNLRSHLRTHLDDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00733311; iTF_00733343;
- 90% Identity
- iTF_00733311; iTF_00733343;
- 80% Identity
- iTF_00733311; iTF_00733343;