Focc000466.1
Basic Information
- Insect
- Frankliniella occidentalis
- Gene Symbol
- -
- Assembly
- None
- Location
- ML763212.1:317420-339673[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.7e-06 0.0049 16.7 0.6 18 41 11 31 6 33 0.93 2 13 0.00084 0.53 10.2 1.2 17 41 38 59 32 61 0.88 3 13 0.036 23 5.0 0.6 17 41 66 87 59 89 0.80 4 13 2.7 1.7e+03 -1.0 0.2 18 28 95 105 91 117 0.73 5 13 0.0031 2 8.4 0.8 13 30 118 135 107 139 0.78 6 13 2.2e-05 0.014 15.3 1.5 5 41 139 171 136 175 0.91 7 13 0.27 1.7e+02 2.2 3.0 16 43 177 201 168 202 0.81 8 13 0.015 9.2 6.3 2.9 5 41 195 228 192 230 0.91 9 13 0.29 1.9e+02 2.1 4.6 10 38 229 257 224 258 0.73 10 13 0.0078 5 7.1 1.5 13 29 259 275 250 281 0.76 11 13 1.3e-05 0.0081 16.0 1.1 5 41 280 312 277 314 0.89 12 13 0.28 1.8e+02 2.1 0.9 17 40 319 339 312 342 0.76 13 13 0.0012 0.79 9.7 2.2 5 41 336 368 334 370 0.80
Sequence Information
- Coding Sequence
- aTGAAGGGGCTCTCGACAGATCGGCCGTTCGAGTGCAACATCTGCCAAAAGAAATTCTCTAGAACTGACACCTTGCGTGATCATCTTCGAACACACACAGgcgaaaagcctttcgagtgcgcTATCTGCCGAAAGTCTTTTACCCAATCTGGGAATTTGCGTAAACATCTTCGaacacacacaggcgagaagccttttgagtgcgccGTCTGCCGAAAGTCTTTTGCCCGATCTGAACATTTGCAGGCTCATCTTCGAACACACACAGGCGataagccttttgagtgcgATGTTTGCCAAAAGAGGTTTGCCCAACCTGGACATTGGCAGACTCATCTTCGAACACACACAGGCGAAAAGTCTTTTGAGTGCAATGTTTGCCAAAAGAAGTTTTCTGAGAGTGGGCATCTAAGCAGACATTTCCGAATCCACACAGAAGAAAAGTCATTTGAGTGCGTCATCTGCCGGAAGTCTTTTACCCAATCTGGAACTTTGCGTGATCATCTTCGaacacacacaggcgagaagccttttgagtgtgcCGTCTGCCGAAAGTCTTTTGCCACATCTGGATCTTTGCGTGATCATGTTCGAACACACCACACAGACGataagccttttgagtgcgccGTCTGCCGAAAGTCTTTTGTCAAATCTGAATATTTGCGTAAACATCTTCGAACACACACAGGCGATAAGTCTTTTGAGTGTACCGTTTGCAAAAAGAAGTTTGCGCAACATGGGCACTGGCAGACTCATCTTCGaacacacacaggtgaaaagtCTTTTGAGTGCAATGTTTGCCAAAAGAAGTTTTCTGAGAGGGGGCAACTAAGCAGCCATTTCCGTATTCACACAGACGAAAAGTCATTTGAGTGCGTCATCTGCCGGAAGTCTTTTACCCAATCTGGAACTTTACGtgttcatctcagaacacacacaggcgagaagccttttgagtgtgcTGTCTGCCGAAAGTCTTTTGCCACGTCTGGAACTTTGCGTAAACATTTTCGAACACACAGAGGCGATaggccttttgagtgcaccATCTGCCGAAAGTCTTTTACCCGACCTGGAAATTTGCGTAGTCATCTTCGAACCCACCTCGACGACGACTAG
- Protein Sequence
- MKGLSTDRPFECNICQKKFSRTDTLRDHLRTHTGEKPFECAICRKSFTQSGNLRKHLRTHTGEKPFECAVCRKSFARSEHLQAHLRTHTGDKPFECDVCQKRFAQPGHWQTHLRTHTGEKSFECNVCQKKFSESGHLSRHFRIHTEEKSFECVICRKSFTQSGTLRDHLRTHTGEKPFECAVCRKSFATSGSLRDHVRTHHTDDKPFECAVCRKSFVKSEYLRKHLRTHTGDKSFECTVCKKKFAQHGHWQTHLRTHTGEKSFECNVCQKKFSERGQLSSHFRIHTDEKSFECVICRKSFTQSGTLRVHLRTHTGEKPFECAVCRKSFATSGTLRKHFRTHRGDRPFECTICRKSFTRPGNLRSHLRTHLDDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00733657;
- 90% Identity
- iTF_00733657;
- 80% Identity
- iTF_00733657;