Focc007515.1
Basic Information
- Insect
- Frankliniella occidentalis
- Gene Symbol
- -
- Assembly
- None
- Location
- ML763130.1:373159-382683[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 3.3 2.7e+03 -1.5 0.2 26 44 37 55 32 59 0.83 2 26 0.028 23 5.1 0.3 21 44 60 83 55 91 0.87 3 26 0.026 22 5.2 0.0 21 46 88 113 84 119 0.87 4 26 0.95 7.8e+02 0.2 0.0 21 46 116 141 112 147 0.84 5 26 0.022 18 5.4 0.0 21 45 144 168 140 174 0.90 6 26 3 2.5e+03 -1.4 0.1 24 45 175 196 167 202 0.78 7 26 0.6 4.9e+02 0.8 0.1 22 52 201 231 196 233 0.80 8 26 2.6 2.1e+03 -1.2 0.1 24 45 231 252 227 260 0.78 9 26 0.94 7.7e+02 0.2 0.1 21 45 256 280 249 285 0.83 10 26 0.018 15 5.7 0.1 20 47 284 311 278 317 0.84 11 26 0.97 8e+02 0.2 0.0 21 48 313 340 309 346 0.81 12 26 0.37 3e+02 1.5 0.0 23 45 343 365 337 368 0.90 13 26 0.0041 3.3 7.8 0.1 21 45 369 393 365 396 0.91 14 26 0.023 19 5.4 0.0 21 46 397 422 393 428 0.86 15 26 0.015 13 5.9 0.0 21 46 425 450 421 456 0.86 16 26 0.052 43 4.2 0.0 21 45 453 477 449 480 0.90 17 26 0.032 27 4.9 0.1 21 45 510 534 507 543 0.87 18 26 4.5 3.7e+03 -2.0 0.1 21 43 540 562 536 571 0.75 19 26 0.29 2.3e+02 1.9 0.3 16 45 562 592 549 600 0.71 20 26 1.7 1.4e+03 -0.6 0.1 21 43 596 618 592 623 0.75 21 26 0.00036 0.3 11.1 0.1 21 47 653 679 645 686 0.86 22 26 7.7 6.3e+03 -2.7 0.0 21 43 709 731 703 741 0.71 23 26 6.2 5.1e+03 -2.4 0.0 21 46 737 762 728 768 0.80 24 26 4.8 4e+03 -2.1 0.0 21 43 765 787 752 791 0.81 25 26 0.0078 6.4 6.9 0.0 21 47 793 819 788 825 0.86 26 26 0.024 20 5.3 0.0 21 46 821 846 817 849 0.91
Sequence Information
- Coding Sequence
- ATGGAATCTAATGAAGCTCCATTCTTGTGCGTCGTATGTGAAAAAGACTTCAAAGGAAATGATGAACTCGAGGCTCATCTCAGAACTCACGTTAAAGCAAAATCGTTTGACTGTTCTGTGTGCTATAGAAAATGTTTGACAGCTGATCAGCTCCGTGTTCATTttcgaacccacactggagaaaagccgtATCAGTGCACCATATGCTCCAAGGCATTTGCTCAATGTGGAGTACTGCAAAGACATGTCCTGACCCACACTGGCGAAAAACCGTTTGAGTGTGtggtgtgcaacaagaaattatCTTCTAGTAGAAGTCTGCAATCACATCTCggcacccacacaggagaaaagccttttgagtgtgcTCTGTGCAGTAAAAGATTTGCTCGGGGTACCGGCTTGCGTTGtcacctccgaacccacacaggggagaaaccctttgagtgtagtgtgtgcaacaAATTTTTTTCAGATGGTGGGAATCTACGTTCGCACCTGAGAACCCACTCACATAATGAGAGTGTCAAATGCTCtgtttgcaacaagaaattttcaacaGAATATAGTTTGCGTcaacatctccgaacccacataGGAGAGAAAAGCTATGAGTGTAGtctgtgcaacaagaaatttttaacaagTGATTATTTGCGTAGACATACCCTTATCCACATACATgtgaagccttttgagtgcacccTGTGCTCCAAGAATTTTGCCAGAAAAATTTGTCTTCGAAAGCATCTTcaaacccacactggagaaaggCCGTTTAAATGCAGCGTGTGTGAGAAGACTTTTACACAGAGAAGCAATTTCCTCGTTCATTTTCGAGCTGTGCATTCGGGTGAAAAGCCTCATAAATGTACGGTGTGTAACAAGAATTTTGCGAGGACTGATGACTTGCAAAGGCATCTGCAAACCCACACAGGCGAAAAGCCTTTCGAATGCAACGTTTGCAGCAAGAAGTTTCCCAGAATTTCTGCGCTGCGTGTCCATCTCAGAACCCACACCGGAgtaaagccttttgagtgcaccgtATGTAACAAAACATTTTCGCACAGTGGGGGTCTTCGTTcccatctgcgaacccacaccggagaacAACCTTACAAATGTAACGTATGTAACAAAGCATTTTCGCACAGTAACGGTCTACGTTcccatctgcgaacccacaccggagaaaaaCCTTACAAGTGTAACGTATGTAACAAAGCATTTTCGCAAGGTGAGGGCCTGCGggttcatcttcgaactcacaccggagaaaagccttACGAGTGTAACTTTTGTAGTAAAACCTTTGCACAGAGCGGTGTTCTTGAAagacatctccgaacccacacaggagagaaaccttttcAGTGCAGTGTCTGCCTCAAATCTTTTGCCCAGGATGGAGCGTTGCGAGTGCATCTTCGAACTCACACTGGGGGAGAGATCTTCGAGTGCTCCCAGTGCCCGAAAACGTTTATGTCGAAGAATGGTCTTCATAGTCATGTTCTTGTGATTCATAGGGAAGAAAAACCTTTCAAATGTAGTTTATGTGACAAAAAATATGCGATTAAGCATAATTTGCGTCGTCATTTCCAAACTCACACTAaaactggagagaagccttacgaaTGCTCTgtttgcaaaagaaaatttgCGGCTAAGGGAAATTTAACAACACATTCCAGAACTCACACGAAtgaaaagccttttgaatgcaACGTGTGCATCAAGAAGTTTTCTAGAGCTGAACATCTGCAACTTCACCTCAGaacacacacgggagaaaagccgtaTGAGTGTAATATTTGCAAAAAGACTTTTGCAATTAAAGGTAATATGATAAAACACTTCCGAGCACACTCCGGAGGAAATAAGCGTTTTCACTGCACTCAGTGTGACAAAACATTTTCGCAAGCTTCTGGACTGAAAATACATCTTAGAaaacacacaggagaaaagccttttacGTGCACTGTTTGTCACAAAAACTTTGCTCAAAGTAGTGCACTTAAAACACACTTGAGAacacacactggagaaaagccctttgagtgtaccCATTGCGCTAAGCACTTTTCTACAAGTGGTAGTCTGGCGCTTCATTTACGAACCCATACTGGGGAAAAGCCTTTCCAGTGTACTATGTGCCCACAGAAATTTACCGGGAAAAGTGAAATGCGGTTACATATCCGCACACACACCGGAGAAAAACCATATAATTGTTCCGGATGCAGCAAAACGTTTTCATCGAATTCTGGCTTGAAGTCTCATTTGAAAACGCACACAGGCGAAAAGCCTCATCAGTGTAATcagtgcgacaagaaatttgctaCAAGTTTCCAACTGCGTCTTCATTACCGTACCCATaccggagaaaagccttttgagtgtactgtgtgccacaagaaaaGTGCTACTTCTGGAAACCTGCGCCTTCACCTCCGAACTCATACAGGAGAAAAACCGTACAAGTGTACTGTGTGCGGCAAGACCTTCTCGCAAAGTGCAAGCATGCTAAAGCACCTCCGTTTGCACAGTGCAACATAA
- Protein Sequence
- MESNEAPFLCVVCEKDFKGNDELEAHLRTHVKAKSFDCSVCYRKCLTADQLRVHFRTHTGEKPYQCTICSKAFAQCGVLQRHVLTHTGEKPFECVVCNKKLSSSRSLQSHLGTHTGEKPFECALCSKRFARGTGLRCHLRTHTGEKPFECSVCNKFFSDGGNLRSHLRTHSHNESVKCSVCNKKFSTEYSLRQHLRTHIGEKSYECSLCNKKFLTSDYLRRHTLIHIHVKPFECTLCSKNFARKICLRKHLQTHTGERPFKCSVCEKTFTQRSNFLVHFRAVHSGEKPHKCTVCNKNFARTDDLQRHLQTHTGEKPFECNVCSKKFPRISALRVHLRTHTGVKPFECTVCNKTFSHSGGLRSHLRTHTGEQPYKCNVCNKAFSHSNGLRSHLRTHTGEKPYKCNVCNKAFSQGEGLRVHLRTHTGEKPYECNFCSKTFAQSGVLERHLRTHTGEKPFQCSVCLKSFAQDGALRVHLRTHTGGEIFECSQCPKTFMSKNGLHSHVLVIHREEKPFKCSLCDKKYAIKHNLRRHFQTHTKTGEKPYECSVCKRKFAAKGNLTTHSRTHTNEKPFECNVCIKKFSRAEHLQLHLRTHTGEKPYECNICKKTFAIKGNMIKHFRAHSGGNKRFHCTQCDKTFSQASGLKIHLRKHTGEKPFTCTVCHKNFAQSSALKTHLRTHTGEKPFECTHCAKHFSTSGSLALHLRTHTGEKPFQCTMCPQKFTGKSEMRLHIRTHTGEKPYNCSGCSKTFSSNSGLKSHLKTHTGEKPHQCNQCDKKFATSFQLRLHYRTHTGEKPFECTVCHKKSATSGNLRLHLRTHTGEKPYKCTVCGKTFSQSASMLKHLRLHSAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00733313;
- 90% Identity
- iTF_00733313;
- 80% Identity
- iTF_00733313;