Focc007515.1
Basic Information
- Insect
- Frankliniella occidentalis
- Gene Symbol
- -
- Assembly
- None
- Location
- ML763130.1:373159-382683[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 2.3 1.4e+03 -0.8 0.0 19 40 10 28 8 34 0.72 2 28 0.48 3.1e+02 1.4 0.7 6 27 54 74 51 82 0.86 3 28 0.011 7.2 6.6 0.6 14 39 89 111 78 116 0.70 4 28 0.015 9.6 6.2 2.6 16 41 119 141 109 143 0.86 5 28 0.0074 4.7 7.2 0.4 17 41 148 169 142 173 0.84 6 28 0.017 11 6.0 2.9 15 41 174 197 170 199 0.84 7 28 0.65 4.1e+02 1.0 1.9 14 28 201 215 197 229 0.77 8 28 0.034 21 5.1 5.2 17 41 232 253 217 255 0.85 9 28 0.034 22 5.1 0.5 18 44 261 284 257 284 0.90 10 28 5.5e-05 0.035 14.0 0.7 1 41 273 310 273 312 0.93 11 28 0.0099 6.3 6.8 0.2 17 41 317 338 311 339 0.89 12 28 0.0035 2.2 8.3 1.5 18 41 346 366 343 368 0.89 13 28 0.00014 0.086 12.8 2.1 17 41 373 394 367 396 0.88 14 28 0.0011 0.7 9.8 0.4 17 41 401 422 394 424 0.88 15 28 0.0074 4.7 7.2 0.2 17 41 429 450 423 452 0.81 16 28 8.8 5.6e+03 -2.6 0.0 18 40 458 477 454 479 0.67 17 28 3.3 2.1e+03 -1.3 0.2 18 37 486 502 482 509 0.76 18 28 0.001 0.63 10.0 3.5 5 41 502 535 498 538 0.88 19 28 0.082 52 3.9 2.7 5 33 531 561 530 568 0.80 20 28 0.1 65 3.5 1.9 13 29 568 584 561 595 0.71 21 28 0.0067 4.2 7.3 3.5 15 37 598 621 588 622 0.73 22 28 0.0012 0.76 9.7 2.3 5 41 617 650 614 652 0.92 23 28 0.0024 1.5 8.8 2.1 17 41 657 678 650 680 0.87 24 28 0.16 1e+02 2.9 1.6 17 30 685 698 679 707 0.74 25 28 1.2 7.8e+02 0.1 0.6 16 41 712 734 703 736 0.80 26 28 0.2 1.2e+02 2.6 5.0 18 41 742 762 731 772 0.85 27 28 9.2 5.8e+03 -2.7 9.0 13 41 793 818 761 820 0.85 28 28 0.016 10 6.1 0.6 17 40 825 845 819 847 0.80
Sequence Information
- Coding Sequence
- ATGGAATCTAATGAAGCTCCATTCTTGTGCGTCGTATGTGAAAAAGACTTCAAAGGAAATGATGAACTCGAGGCTCATCTCAGAACTCACGTTAAAGCAAAATCGTTTGACTGTTCTGTGTGCTATAGAAAATGTTTGACAGCTGATCAGCTCCGTGTTCATTttcgaacccacactggagaaaagccgtATCAGTGCACCATATGCTCCAAGGCATTTGCTCAATGTGGAGTACTGCAAAGACATGTCCTGACCCACACTGGCGAAAAACCGTTTGAGTGTGtggtgtgcaacaagaaattatCTTCTAGTAGAAGTCTGCAATCACATCTCggcacccacacaggagaaaagccttttgagtgtgcTCTGTGCAGTAAAAGATTTGCTCGGGGTACCGGCTTGCGTTGtcacctccgaacccacacaggggagaaaccctttgagtgtagtgtgtgcaacaAATTTTTTTCAGATGGTGGGAATCTACGTTCGCACCTGAGAACCCACTCACATAATGAGAGTGTCAAATGCTCtgtttgcaacaagaaattttcaacaGAATATAGTTTGCGTcaacatctccgaacccacataGGAGAGAAAAGCTATGAGTGTAGtctgtgcaacaagaaatttttaacaagTGATTATTTGCGTAGACATACCCTTATCCACATACATgtgaagccttttgagtgcacccTGTGCTCCAAGAATTTTGCCAGAAAAATTTGTCTTCGAAAGCATCTTcaaacccacactggagaaaggCCGTTTAAATGCAGCGTGTGTGAGAAGACTTTTACACAGAGAAGCAATTTCCTCGTTCATTTTCGAGCTGTGCATTCGGGTGAAAAGCCTCATAAATGTACGGTGTGTAACAAGAATTTTGCGAGGACTGATGACTTGCAAAGGCATCTGCAAACCCACACAGGCGAAAAGCCTTTCGAATGCAACGTTTGCAGCAAGAAGTTTCCCAGAATTTCTGCGCTGCGTGTCCATCTCAGAACCCACACCGGAgtaaagccttttgagtgcaccgtATGTAACAAAACATTTTCGCACAGTGGGGGTCTTCGTTcccatctgcgaacccacaccggagaacAACCTTACAAATGTAACGTATGTAACAAAGCATTTTCGCACAGTAACGGTCTACGTTcccatctgcgaacccacaccggagaaaaaCCTTACAAGTGTAACGTATGTAACAAAGCATTTTCGCAAGGTGAGGGCCTGCGggttcatcttcgaactcacaccggagaaaagccttACGAGTGTAACTTTTGTAGTAAAACCTTTGCACAGAGCGGTGTTCTTGAAagacatctccgaacccacacaggagagaaaccttttcAGTGCAGTGTCTGCCTCAAATCTTTTGCCCAGGATGGAGCGTTGCGAGTGCATCTTCGAACTCACACTGGGGGAGAGATCTTCGAGTGCTCCCAGTGCCCGAAAACGTTTATGTCGAAGAATGGTCTTCATAGTCATGTTCTTGTGATTCATAGGGAAGAAAAACCTTTCAAATGTAGTTTATGTGACAAAAAATATGCGATTAAGCATAATTTGCGTCGTCATTTCCAAACTCACACTAaaactggagagaagccttacgaaTGCTCTgtttgcaaaagaaaatttgCGGCTAAGGGAAATTTAACAACACATTCCAGAACTCACACGAAtgaaaagccttttgaatgcaACGTGTGCATCAAGAAGTTTTCTAGAGCTGAACATCTGCAACTTCACCTCAGaacacacacgggagaaaagccgtaTGAGTGTAATATTTGCAAAAAGACTTTTGCAATTAAAGGTAATATGATAAAACACTTCCGAGCACACTCCGGAGGAAATAAGCGTTTTCACTGCACTCAGTGTGACAAAACATTTTCGCAAGCTTCTGGACTGAAAATACATCTTAGAaaacacacaggagaaaagccttttacGTGCACTGTTTGTCACAAAAACTTTGCTCAAAGTAGTGCACTTAAAACACACTTGAGAacacacactggagaaaagccctttgagtgtaccCATTGCGCTAAGCACTTTTCTACAAGTGGTAGTCTGGCGCTTCATTTACGAACCCATACTGGGGAAAAGCCTTTCCAGTGTACTATGTGCCCACAGAAATTTACCGGGAAAAGTGAAATGCGGTTACATATCCGCACACACACCGGAGAAAAACCATATAATTGTTCCGGATGCAGCAAAACGTTTTCATCGAATTCTGGCTTGAAGTCTCATTTGAAAACGCACACAGGCGAAAAGCCTCATCAGTGTAATcagtgcgacaagaaatttgctaCAAGTTTCCAACTGCGTCTTCATTACCGTACCCATaccggagaaaagccttttgagtgtactgtgtgccacaagaaaaGTGCTACTTCTGGAAACCTGCGCCTTCACCTCCGAACTCATACAGGAGAAAAACCGTACAAGTGTACTGTGTGCGGCAAGACCTTCTCGCAAAGTGCAAGCATGCTAAAGCACCTCCGTTTGCACAGTGCAACATAA
- Protein Sequence
- MESNEAPFLCVVCEKDFKGNDELEAHLRTHVKAKSFDCSVCYRKCLTADQLRVHFRTHTGEKPYQCTICSKAFAQCGVLQRHVLTHTGEKPFECVVCNKKLSSSRSLQSHLGTHTGEKPFECALCSKRFARGTGLRCHLRTHTGEKPFECSVCNKFFSDGGNLRSHLRTHSHNESVKCSVCNKKFSTEYSLRQHLRTHIGEKSYECSLCNKKFLTSDYLRRHTLIHIHVKPFECTLCSKNFARKICLRKHLQTHTGERPFKCSVCEKTFTQRSNFLVHFRAVHSGEKPHKCTVCNKNFARTDDLQRHLQTHTGEKPFECNVCSKKFPRISALRVHLRTHTGVKPFECTVCNKTFSHSGGLRSHLRTHTGEQPYKCNVCNKAFSHSNGLRSHLRTHTGEKPYKCNVCNKAFSQGEGLRVHLRTHTGEKPYECNFCSKTFAQSGVLERHLRTHTGEKPFQCSVCLKSFAQDGALRVHLRTHTGGEIFECSQCPKTFMSKNGLHSHVLVIHREEKPFKCSLCDKKYAIKHNLRRHFQTHTKTGEKPYECSVCKRKFAAKGNLTTHSRTHTNEKPFECNVCIKKFSRAEHLQLHLRTHTGEKPYECNICKKTFAIKGNMIKHFRAHSGGNKRFHCTQCDKTFSQASGLKIHLRKHTGEKPFTCTVCHKNFAQSSALKTHLRTHTGEKPFECTHCAKHFSTSGSLALHLRTHTGEKPFQCTMCPQKFTGKSEMRLHIRTHTGEKPYNCSGCSKTFSSNSGLKSHLKTHTGEKPHQCNQCDKKFATSFQLRLHYRTHTGEKPFECTVCHKKSATSGNLRLHLRTHTGEKPYKCTVCGKTFSQSASMLKHLRLHSAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00733655; iTF_00733337;
- 90% Identity
- iTF_00733655; iTF_00733337;
- 80% Identity
- iTF_00733655; iTF_00733337;