Focc007515.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Frankliniella occidentalis
Gene Symbol
-
Assembly
None
Location
ML763130.1:373159-382683[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 6e-05 0.0032 17.7 0.1 1 23 8 30 8 30 0.95
2 30 0.076 4.1 7.9 2.9 1 23 36 58 36 58 0.97
3 30 1.7e-05 0.00092 19.4 1.0 1 23 64 86 64 86 0.99
4 30 0.00029 0.016 15.5 0.6 1 23 92 114 92 114 0.98
5 30 0.015 0.8 10.2 2.0 1 23 120 142 120 142 0.98
6 30 1e-06 5.6e-05 23.3 0.8 1 23 148 170 148 170 0.99
7 30 6.9e-07 3.8e-05 23.8 2.0 2 23 177 198 176 198 0.98
8 30 0.00017 0.0094 16.3 1.6 1 23 204 226 204 226 0.98
9 30 6.9e-05 0.0037 17.5 4.2 1 23 232 254 232 254 0.98
10 30 5.7e-06 0.00031 20.9 1.6 1 23 260 283 260 283 0.96
11 30 1.8e-06 9.8e-05 22.5 3.0 1 23 289 311 289 311 0.98
12 30 1.2e-06 6.6e-05 23.0 0.5 1 23 317 339 317 339 0.99
13 30 3.2e-07 1.7e-05 24.9 2.5 1 23 345 367 345 367 0.99
14 30 4e-07 2.2e-05 24.6 3.0 1 23 373 395 373 395 0.99
15 30 8e-07 4.4e-05 23.6 0.4 1 23 401 423 401 423 0.99
16 30 1.8e-06 9.6e-05 22.5 0.8 1 23 429 451 429 451 0.99
17 30 1.2e-05 0.00067 19.9 0.2 1 23 457 479 457 479 0.99
18 30 0.00026 0.014 15.7 0.8 1 23 485 508 485 508 0.96
19 30 0.00018 0.0096 16.2 5.0 1 23 514 536 514 536 0.99
20 30 2.5e-05 0.0013 18.9 1.0 1 23 544 566 544 566 0.99
21 30 1.5e-05 0.00084 19.6 2.0 1 23 572 594 572 594 0.98
22 30 4.2e-05 0.0023 18.2 0.6 1 23 600 622 600 622 0.98
23 30 7.2e-07 3.9e-05 23.7 3.0 1 23 629 651 629 651 0.98
24 30 5.1e-07 2.8e-05 24.2 3.2 1 23 657 679 657 679 0.99
25 30 1.5e-05 0.00079 19.6 3.5 1 23 685 707 685 707 0.99
26 30 5.2e-06 0.00028 21.0 1.2 1 23 713 735 713 735 0.99
27 30 5.6e-07 3e-05 24.1 1.7 1 23 741 763 741 763 0.98
28 30 6.8e-06 0.00037 20.7 4.9 1 23 769 791 769 791 0.98
29 30 9.9e-06 0.00054 20.2 2.1 1 23 797 819 797 819 0.99
30 30 2.5e-07 1.4e-05 25.2 1.1 1 23 825 847 825 847 0.99

Sequence Information

Coding Sequence
ATGGAATCTAATGAAGCTCCATTCTTGTGCGTCGTATGTGAAAAAGACTTCAAAGGAAATGATGAACTCGAGGCTCATCTCAGAACTCACGTTAAAGCAAAATCGTTTGACTGTTCTGTGTGCTATAGAAAATGTTTGACAGCTGATCAGCTCCGTGTTCATTttcgaacccacactggagaaaagccgtATCAGTGCACCATATGCTCCAAGGCATTTGCTCAATGTGGAGTACTGCAAAGACATGTCCTGACCCACACTGGCGAAAAACCGTTTGAGTGTGtggtgtgcaacaagaaattatCTTCTAGTAGAAGTCTGCAATCACATCTCggcacccacacaggagaaaagccttttgagtgtgcTCTGTGCAGTAAAAGATTTGCTCGGGGTACCGGCTTGCGTTGtcacctccgaacccacacaggggagaaaccctttgagtgtagtgtgtgcaacaAATTTTTTTCAGATGGTGGGAATCTACGTTCGCACCTGAGAACCCACTCACATAATGAGAGTGTCAAATGCTCtgtttgcaacaagaaattttcaacaGAATATAGTTTGCGTcaacatctccgaacccacataGGAGAGAAAAGCTATGAGTGTAGtctgtgcaacaagaaatttttaacaagTGATTATTTGCGTAGACATACCCTTATCCACATACATgtgaagccttttgagtgcacccTGTGCTCCAAGAATTTTGCCAGAAAAATTTGTCTTCGAAAGCATCTTcaaacccacactggagaaaggCCGTTTAAATGCAGCGTGTGTGAGAAGACTTTTACACAGAGAAGCAATTTCCTCGTTCATTTTCGAGCTGTGCATTCGGGTGAAAAGCCTCATAAATGTACGGTGTGTAACAAGAATTTTGCGAGGACTGATGACTTGCAAAGGCATCTGCAAACCCACACAGGCGAAAAGCCTTTCGAATGCAACGTTTGCAGCAAGAAGTTTCCCAGAATTTCTGCGCTGCGTGTCCATCTCAGAACCCACACCGGAgtaaagccttttgagtgcaccgtATGTAACAAAACATTTTCGCACAGTGGGGGTCTTCGTTcccatctgcgaacccacaccggagaacAACCTTACAAATGTAACGTATGTAACAAAGCATTTTCGCACAGTAACGGTCTACGTTcccatctgcgaacccacaccggagaaaaaCCTTACAAGTGTAACGTATGTAACAAAGCATTTTCGCAAGGTGAGGGCCTGCGggttcatcttcgaactcacaccggagaaaagccttACGAGTGTAACTTTTGTAGTAAAACCTTTGCACAGAGCGGTGTTCTTGAAagacatctccgaacccacacaggagagaaaccttttcAGTGCAGTGTCTGCCTCAAATCTTTTGCCCAGGATGGAGCGTTGCGAGTGCATCTTCGAACTCACACTGGGGGAGAGATCTTCGAGTGCTCCCAGTGCCCGAAAACGTTTATGTCGAAGAATGGTCTTCATAGTCATGTTCTTGTGATTCATAGGGAAGAAAAACCTTTCAAATGTAGTTTATGTGACAAAAAATATGCGATTAAGCATAATTTGCGTCGTCATTTCCAAACTCACACTAaaactggagagaagccttacgaaTGCTCTgtttgcaaaagaaaatttgCGGCTAAGGGAAATTTAACAACACATTCCAGAACTCACACGAAtgaaaagccttttgaatgcaACGTGTGCATCAAGAAGTTTTCTAGAGCTGAACATCTGCAACTTCACCTCAGaacacacacgggagaaaagccgtaTGAGTGTAATATTTGCAAAAAGACTTTTGCAATTAAAGGTAATATGATAAAACACTTCCGAGCACACTCCGGAGGAAATAAGCGTTTTCACTGCACTCAGTGTGACAAAACATTTTCGCAAGCTTCTGGACTGAAAATACATCTTAGAaaacacacaggagaaaagccttttacGTGCACTGTTTGTCACAAAAACTTTGCTCAAAGTAGTGCACTTAAAACACACTTGAGAacacacactggagaaaagccctttgagtgtaccCATTGCGCTAAGCACTTTTCTACAAGTGGTAGTCTGGCGCTTCATTTACGAACCCATACTGGGGAAAAGCCTTTCCAGTGTACTATGTGCCCACAGAAATTTACCGGGAAAAGTGAAATGCGGTTACATATCCGCACACACACCGGAGAAAAACCATATAATTGTTCCGGATGCAGCAAAACGTTTTCATCGAATTCTGGCTTGAAGTCTCATTTGAAAACGCACACAGGCGAAAAGCCTCATCAGTGTAATcagtgcgacaagaaatttgctaCAAGTTTCCAACTGCGTCTTCATTACCGTACCCATaccggagaaaagccttttgagtgtactgtgtgccacaagaaaaGTGCTACTTCTGGAAACCTGCGCCTTCACCTCCGAACTCATACAGGAGAAAAACCGTACAAGTGTACTGTGTGCGGCAAGACCTTCTCGCAAAGTGCAAGCATGCTAAAGCACCTCCGTTTGCACAGTGCAACATAA
Protein Sequence
MESNEAPFLCVVCEKDFKGNDELEAHLRTHVKAKSFDCSVCYRKCLTADQLRVHFRTHTGEKPYQCTICSKAFAQCGVLQRHVLTHTGEKPFECVVCNKKLSSSRSLQSHLGTHTGEKPFECALCSKRFARGTGLRCHLRTHTGEKPFECSVCNKFFSDGGNLRSHLRTHSHNESVKCSVCNKKFSTEYSLRQHLRTHIGEKSYECSLCNKKFLTSDYLRRHTLIHIHVKPFECTLCSKNFARKICLRKHLQTHTGERPFKCSVCEKTFTQRSNFLVHFRAVHSGEKPHKCTVCNKNFARTDDLQRHLQTHTGEKPFECNVCSKKFPRISALRVHLRTHTGVKPFECTVCNKTFSHSGGLRSHLRTHTGEQPYKCNVCNKAFSHSNGLRSHLRTHTGEKPYKCNVCNKAFSQGEGLRVHLRTHTGEKPYECNFCSKTFAQSGVLERHLRTHTGEKPFQCSVCLKSFAQDGALRVHLRTHTGGEIFECSQCPKTFMSKNGLHSHVLVIHREEKPFKCSLCDKKYAIKHNLRRHFQTHTKTGEKPYECSVCKRKFAAKGNLTTHSRTHTNEKPFECNVCIKKFSRAEHLQLHLRTHTGEKPYECNICKKTFAIKGNMIKHFRAHSGGNKRFHCTQCDKTFSQASGLKIHLRKHTGEKPFTCTVCHKNFAQSSALKTHLRTHTGEKPFECTHCAKHFSTSGSLALHLRTHTGEKPFQCTMCPQKFTGKSEMRLHIRTHTGEKPYNCSGCSKTFSSNSGLKSHLKTHTGEKPHQCNQCDKKFATSFQLRLHYRTHTGEKPFECTVCHKKSATSGNLRLHLRTHTGEKPYKCTVCGKTFSQSASMLKHLRLHSAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00733313;
90% Identity
iTF_00733313;
80% Identity
iTF_00733313;