Focc002750.1
Basic Information
- Insect
- Frankliniella occidentalis
- Gene Symbol
- MBD2
- Assembly
- None
- Location
- ML763269.1:285598-290359[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.6e-26 3.2e-22 77.8 0.0 2 72 8 73 7 78 0.93 2 2 0.00042 1.4 8.5 0.1 18 73 82 150 80 154 0.77
Sequence Information
- Coding Sequence
- ATGCAAAATATAATGTCggttgaaaagaaaaaatttgacTGCACAGCCTTACCAAAAGGATGGCAGCGAGAAGAAATTGTTCGAAAGTCGGGCTTGTCTGCGGGCAAAGTGGATATATACTATTACAGTCCCTCAGGCCACCGGTTCCGCAGCAAACCTCAACTAGCACGGTACTTGGGAGACTCTGTCGATCTCTCTTCATTTGACTTTAGAACTGGAAATATTAATAATAACGTCTTGAGAAAAACCAAACAGAGGCCAAGAGGGATTCAATTCGATTACAGCCGCGGAGTACGGACAGATGCGTCTTTGGTACCACCAATAAGGCAAACAGCCTCCATTTTTAAACAACCTGTCACTGTCCACAAATCTCAAGAGGGAAAAGTTAAGACTGATTTCAAACAAGGACCTCAAGACAAACCTAAACAGCTGTTTTGGGAAAAGCGTTTGGAAGGTTTACGTGCTTGTGATATTGATGGACTTGAACTGGATGCAATGGAGTTGCCAAAAGGTTTACGCCCAGTTGGACCACATGTAGGAGATGAAACCCTATTGCAATCAGTAGCAACAGCCCTGCACGTTTCAACACAGCCAGTAACTGGTCAAACTGGCAGTCGTTCTGCTCTAGATAGAAACCCAGGTGTATTTCTAAATCCAGAACAACCACTTGTTCAGGCAGTACAAGTGATAGATGACGACATCAAACGCCAAGAAGATCGAGTTATATCAGCCAGAAAAAAGTTACAAGAAGCCCTTAAGGTATAG
- Protein Sequence
- MQNIMSVEKKKFDCTALPKGWQREEIVRKSGLSAGKVDIYYYSPSGHRFRSKPQLARYLGDSVDLSSFDFRTGNINNNVLRKTKQRPRGIQFDYSRGVRTDASLVPPIRQTASIFKQPVTVHKSQEGKVKTDFKQGPQDKPKQLFWEKRLEGLRACDIDGLELDAMELPKGLRPVGPHVGDETLLQSVATALHVSTQPVTGQTGSRSALDRNPGVFLNPEQPLVQAVQVIDDDIKRQEDRVISARKKLQEALKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00731497;
- 90% Identity
- iTF_00731497;
- 80% Identity
- -