Basic Information

Insect: Frankliniella intonsa
Gene Symbol: znf423
Assembly: GCA_033675135.1
Location: CM066248.1:6847143-6856342[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.14 8.8 6.0 5.9 1 23 3 25 3 25 0.98

2 23 4e-07 2.4e-05 23.5 2.2 1 23 31 53 31 53 0.99

3 23 1.2e-05 0.00075 18.8 0.2 1 23 59 81 59 81 0.98

4 23 0.00046 0.028 13.8 2.2 1 23 113 136 113 137 0.96

5 23 0.00063 0.039 13.4 0.9 2 23 245 267 244 267 0.96

6 23 0.36 22 4.7 0.1 3 23 283 304 282 304 0.90

7 23 0.11 6.5 6.4 0.0 3 23 397 417 396 417 0.97

8 23 0.64 39 3.9 0.1 2 12 438 448 437 450 0.86

9 23 0.00055 0.034 13.6 0.1 3 23 478 499 476 499 0.94

10 23 0.46 28 4.4 0.1 1 23 504 527 504 527 0.92

11 23 0.00046 0.028 13.8 0.5 1 23 668 691 668 691 0.98

12 23 5 3.1e+02 1.1 0.1 3 23 735 757 734 758 0.79

13 23 9.5e-05 0.0058 16.0 2.6 3 23 780 800 779 800 0.98

14 23 0.038 2.4 7.8 0.5 1 23 814 836 814 836 0.97

15 23 0.01 0.63 9.6 0.4 3 23 845 865 844 865 0.97

16 23 7.6 4.7e+02 0.6 0.1 2 23 891 912 891 912 0.93

17 23 0.013 0.8 9.3 0.0 2 23 1034 1056 1033 1056 0.93

18 23 0.75 46 3.7 0.2 1 23 1060 1082 1060 1082 0.94

19 23 0.21 13 5.5 0.3 2 23 1092 1113 1092 1113 0.95

20 23 0.0013 0.081 12.4 0.1 1 23 1121 1143 1121 1143 0.97

21 23 0.012 0.74 9.4 3.0 1 23 1150 1172 1150 1173 0.94

22 23 0.0016 0.1 12.1 0.0 2 23 1263 1285 1262 1285 0.96

23 23 0.16 10 5.8 0.0 2 23 1304 1326 1303 1326 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.14	8.8	6.0	5.9	1	23	3	25	3	25	0.98
2	23	4e-07	2.4e-05	23.5	2.2	1	23	31	53	31	53	0.99
3	23	1.2e-05	0.00075	18.8	0.2	1	23	59	81	59	81	0.98
4	23	0.00046	0.028	13.8	2.2	1	23	113	136	113	137	0.96
5	23	0.00063	0.039	13.4	0.9	2	23	245	267	244	267	0.96
6	23	0.36	22	4.7	0.1	3	23	283	304	282	304	0.90
7	23	0.11	6.5	6.4	0.0	3	23	397	417	396	417	0.97
8	23	0.64	39	3.9	0.1	2	12	438	448	437	450	0.86
9	23	0.00055	0.034	13.6	0.1	3	23	478	499	476	499	0.94
10	23	0.46	28	4.4	0.1	1	23	504	527	504	527	0.92
11	23	0.00046	0.028	13.8	0.5	1	23	668	691	668	691	0.98
12	23	5	3.1e+02	1.1	0.1	3	23	735	757	734	758	0.79
13	23	9.5e-05	0.0058	16.0	2.6	3	23	780	800	779	800	0.98
14	23	0.038	2.4	7.8	0.5	1	23	814	836	814	836	0.97
15	23	0.01	0.63	9.6	0.4	3	23	845	865	844	865	0.97
16	23	7.6	4.7e+02	0.6	0.1	2	23	891	912	891	912	0.93
17	23	0.013	0.8	9.3	0.0	2	23	1034	1056	1033	1056	0.93
18	23	0.75	46	3.7	0.2	1	23	1060	1082	1060	1082	0.94
19	23	0.21	13	5.5	0.3	2	23	1092	1113	1092	1113	0.95
20	23	0.0013	0.081	12.4	0.1	1	23	1121	1143	1121	1143	0.97
21	23	0.012	0.74	9.4	3.0	1	23	1150	1172	1150	1173	0.94
22	23	0.0016	0.1	12.1	0.0	2	23	1263	1285	1262	1285	0.96
23	23	0.16	10	5.8	0.0	2	23	1304	1326	1303	1326	0.94

Sequence Information

Coding Sequence: ATGCCGTTCCGCTGCGAGTTCTGCAGCCGGCTGTTCAAGCACAAGCGCAGCCGCGACCGCCACATCAAGCTGCACACGGGCGACAAGAAGTACCGCTGCAACCAGTGCGAGGCGGCCTTCAGCAGGAGCGATCACCTCAAGATCCACATGAAGACCCACGACAACCAGAAGCCCTTCCAGTGCACCGTGTGCAACCGCGGCTACaacacggccgccgcgctcacctcgCACATGCAGAACCACAAGAAGGCGGCCGACTCGGCGTCCAACGGCGGCGCGTCCAACGGCCGCTCGTCGTCGCGCGCCTCGTCCGAGAACACGCCCTCGCCGGGGACCTTCCGCTGCCTGCAGTGCGGCGACTGCTTCCGGAAGGCGGAGGAGCTGCAGGCGCACATGGCCAGCCAGCACCACGTGGACATggggtcgccgccgtcgcgctccgccagccgcgggctgctgctcgacTCGCCGCTGTCCCTGTCGCGGTCGCCCTTCCCGCTGCCCACGCTGTCGTGCATGTACTGCACCAAGGACAGCTTCGGCAGCATggaggcgctgcagctgcacgtgCAGGCcatgcacggcgcgctgctcaacggcgagctgcgcgacctggcggcgcaggcggcgcgctccagaCCCTCTGTGGACGACCCGCTCCGCGggtcgccgacgacgccgtcgccgtcgggaccgacgccgcccggcagcgcgagcggcggcggcgccatccCCTGCGAGCTCTGCACCATGAGGTTCAACTCCGTCTCGGGACTCCACAAGCACCAGCGCTCCGTGCACGGCCTGGTCGGGCCCAAGTTCCTGGGCGACCCGTCCCCCATACTGTGCGTGCACTGCTCGATGCCCTTTCCGTCGTCCGCGGCCTTCGCCGAGCACTACGTGCtggtgcacggcgggggcgcgagccccgcggccctggcggccatGGCTGCAAGGacaccctccccgtccccctcgggccgcgagcgtgagcgcgaccgcgaccgcgagcagcaggagaaaCCCACCGACCTGAGTGTGAGCAGGAAGacctcctcgcggcgcggcgcggacgacaAGTCCCTCCTGGGGATGCCGCCGTCCAAACGCTCCAAGTCCAACCACGATcacccgcctctcctcctcgacGGCCTCATGGGCCGCGACTACGAGGCGGGGCCTCTGCTGTGCAAccagtgcggcgccgcgctccccgacTTCGAGGCGTTCCGCGCCCACCTCAAGGCCCACCTGGAGGAccaccgccgcagccctgcgagctcctccccgggcggggccggccacggcctgAGCTGTCCGCACTGCGGCGTCCAGTTCCCGACGGCCACCCCCGAGGACCGCGTCGGCGTGGGCGCGCTCATCGAGCGGCACGTGGCCGAGCACTTCCTGGCCACCGCCACCGAGTTCGGCTGCCCGACCTGCAGCAAGCTGTTCGCCAAGCCCGACGAGCTGCAGAAGCACCTCATGGACATCCACGCGCACCACCTGTACCGCTGCGCGCTCTGCCAGGAGCTGTTCGACTCGAAGGTGGCCATCCAAGTGCACTTCGCCGTCAAGCACTCGTCCGCGTGCCCGCTGTtccgctgcaccgcctgcCCCTCGTCGTCGGCCAGCTCCGTGTTCCGGTCGGACCGCGAGTTCGGCCTGCACGTGCGGAcggcgcacgccacgcacccgctgctggccgccacgcACGCCATGCTGCTCCAGTTCCAGCagaagctgcagcagcgggagcagcgcgACATGCAGCGCGACCGTGACCGCGAGCAGAGggaccgcgagcagcgcgaccgcgaccgcgagcagagagagcgcgaccgcgagcagcgcgaccgggaccgcgaccgggaggcggcccgcgaggcaggccgcgagggggaggcccCCGGACAGCAGCCGTTCCGCTGCCTGTTCTGCCGCGCGTCCTTCGGCTCCGAGCTCGAGCTGCAGTTCCACCTGCCCACCCACACGCGCCAGTACAGCTGCCCGCTCTGCCAGGAGACGTTCCAGGTCGAGTTCCTGCTCGACAAGCACATGCAGACGCAGCACTCGGGCCAGATCAACGGGCGGGacacgccgcccgggcccggcggcgacgccAAGGCCGCCAAGGCCAACGGCTGCACCAACGGTGacgcccccgacccgctgcTCAACAACAACCAGGCGGGCGCGTCGTGTGACATCTGCGAGCGCGGCGACTTCGCGAGCGAggccgagctggccgcgcaccgcaagCTGGCGCACCACAAGAACGGCCAGGGCTCGGGCGGCAACGGCGCGGCCACCAAGAACGGCGCCGTCAGCCTGCTGTGCGCCTACTGCAACGAGTCCTGCAAGTCGCGCACGGAGCTGGAGAACCACATGAAGACGCACTCTCACCAGGGGAcagccggcctgggcggcacGGGCAAGCACAAGTGCAACATCTGCGACGAGTTGTGCCCCTcggccgcggtgctggccgaACACAAGCTGACGCACTGCAAGGTGGTGCAGGGCTCGGCGTGCACGGTGTGCCGCGCGTCCGTCACCACCGAGGAGCAGttccgctcgcacctgcgacAGCACGCCGCGCAGACAGGCGGCAACCCCCAGCCGCAGGTGGGCGCaggtggcggcagcgcgccgctgtgccTGCCCGCGCAGTGCGTCATCTGCAGGCAGACGCTCGTGTCGGACGTGGAGGTGCGCCTGCACGCCCGCTTCCACCTGcagacgggcggcgcgggcgcggcggcgggcggccagggcgccgatcagccctccgcctcgccggagaccgccgccggcgccactaCGGCCACCTGCTGCATCTGCCTCCAGAGCGGCGAGGCCTCTACCATGGTGCCGACCAGCGCTGCCCCGCTAGCCGGACAGTCTGTGTCGTACGTGTGCGCGGACTGCTACCGGAGACACTCTAAGCTGTCATCACGGTCaccgccctccacgccccaGGCCTCGCGAACCTCTTCGCCGTCGCGTCAAGGCCAGGACGACGGTAAGCACGAGTCCCGAGGCACGACGTCCGTGACGTCGGAGAAGTCTGGCAGCCAGGACGCCTCGGGACCTCAGCGCTGTGGAGAGTGCGGCGTCAAAACTGAGTCCGCTGCGGCCCTGGAGGCGCACATGGCCGCTGCCCACAAGAACTCTTACCAGTGCATCAAGTGTCAGGCAAGCTTCGAGACGGAGCGAGACATCCGCCTGCACGTTTCGGCTCACCTGCTCGCCGAGGGCGCCGCTGCCAACGAGTGCAGGCTGTGCCGCCGCCAGCTGTCCACgcccctgcagctgcagctgcacctcaTCGAACACACCTTCGCGGGCTGCGCCTCGTTCACCTGCTACATCTGCAGCGCCGTGTTCACAGCCGCCCGTGGTCTACAGTCGCACATGCTGGAGCacgggctcgcggcgcggccgtacgACTGCTCGCACTGCGGGCTGCGCTTCTTCTTCCGCGCCGAGCTGGACAACCACACCCTgggccaccacgcccaggCGCTGGCGCACGCCAGCCTGCAGGCGCACGCGCAGGCGAGGCCCGGGGAGGACGACGACTCGGTGCAGGCCTCGTTCTACCAGCACCTGTCCTCGCTCAGCACCAGCAACGGCCTGGACCTGCACTACTACAccgtgccgccgggcggggccgctggcgaggccgcggccaagTCGCCGCGCAAgtccccgggccgcagcaACGGCCGAGATCGGGAGCGCgagggacgcggcccggcgctcggcctcggccccaagCAGCGGTGCCTCATCTGCGGCAAGGACCTgccgtcggcgcgcgcgctcgcggcgcacCTGCGCTCGAGCCACGGCATGCAGGACAACGGCGTGGGCCTGGCGCACGGCCTCGACAGCGACCTGCAGGTGTGCCTGTTGTGCAAGGAGGTGCTGCCCGACCGGGACGCGCTGCTCGTGCACCTGGCCGTGcagcaccccgggccggggctggcgccgggcctggcgccgaacctggcggcgccgctgcagctcgaGGCGCACATGGCACTGCTGAGCCAGGCGCACTCACTGCAGCAGATGCAGCACGTCAAGCAGGAGCCGGCCTCTGCCGTTGTCAAAGAAGAGGTCCACGACGACGAGGCGTCCGTCACGTCCGCGGCAGCCGAGGAACGGTCCggatcgccgccgccggtggtcGCTATGGCCTCGGCCCAGCCTCTGACCTCACCCGTGACCTCAGCTGAGGCAGAGGACGCCGATAAGCAGCCTGAGGACGCTACCGCCAACGCACCGGACGCTGAGACCACCAAGGACGACGGAAAAGAAGACGTGGAAATCATTCAGAACGAAGACGcctag
Protein Sequence: MPFRCEFCSRLFKHKRSRDRHIKLHTGDKKYRCNQCEAAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQNHKKAADSASNGGASNGRSSSRASSENTPSPGTFRCLQCGDCFRKAEELQAHMASQHHVDMGSPPSRSASRGLLLDSPLSLSRSPFPLPTLSCMYCTKDSFGSMEALQLHVQAMHGALLNGELRDLAAQAARSRPSVDDPLRGSPTTPSPSGPTPPGSASGGGAIPCELCTMRFNSVSGLHKHQRSVHGLVGPKFLGDPSPILCVHCSMPFPSSAAFAEHYVLVHGGGASPAALAAMAARTPSPSPSGRERERDRDREQQEKPTDLSVSRKTSSRRGADDKSLLGMPPSKRSKSNHDHPPLLLDGLMGRDYEAGPLLCNQCGAALPDFEAFRAHLKAHLEDHRRSPASSSPGGAGHGLSCPHCGVQFPTATPEDRVGVGALIERHVAEHFLATATEFGCPTCSKLFAKPDELQKHLMDIHAHHLYRCALCQELFDSKVAIQVHFAVKHSSACPLFRCTACPSSSASSVFRSDREFGLHVRTAHATHPLLAATHAMLLQFQQKLQQREQRDMQRDRDREQRDREQRDRDREQRERDREQRDRDRDREAAREAGREGEAPGQQPFRCLFCRASFGSELELQFHLPTHTRQYSCPLCQETFQVEFLLDKHMQTQHSGQINGRDTPPGPGGDAKAAKANGCTNGDAPDPLLNNNQAGASCDICERGDFASEAELAAHRKLAHHKNGQGSGGNGAATKNGAVSLLCAYCNESCKSRTELENHMKTHSHQGTAGLGGTGKHKCNICDELCPSAAVLAEHKLTHCKVVQGSACTVCRASVTTEEQFRSHLRQHAAQTGGNPQPQVGAGGGSAPLCLPAQCVICRQTLVSDVEVRLHARFHLQTGGAGAAAGGQGADQPSASPETAAGATTATCCICLQSGEASTMVPTSAAPLAGQSVSYVCADCYRRHSKLSSRSPPSTPQASRTSSPSRQGQDDGKHESRGTTSVTSEKSGSQDASGPQRCGECGVKTESAAALEAHMAAAHKNSYQCIKCQASFETERDIRLHVSAHLLAEGAAANECRLCRRQLSTPLQLQLHLIEHTFAGCASFTCYICSAVFTAARGLQSHMLEHGLAARPYDCSHCGLRFFFRAELDNHTLGHHAQALAHASLQAHAQARPGEDDDSVQASFYQHLSSLSTSNGLDLHYYTVPPGGAAGEAAAKSPRKSPGRSNGRDREREGRGPALGLGPKQRCLICGKDLPSARALAAHLRSSHGMQDNGVGLAHGLDSDLQVCLLCKEVLPDRDALLVHLAVQHPGPGLAPGLAPNLAAPLQLEAHMALLSQAHSLQQMQHVKQEPASAVVKEEVHDDEASVTSAAAEERSGSPPPVVAMASAQPLTSPVTSAEAEDADKQPEDATANAPDAETTKDDGKEDVEIIQNEDA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00733421; iTF_00732054;
90% Identity: iTF_00732054;
80% Identity: -