Basic Information

Insect: Frankliniella fusca
Gene Symbol: L
Assembly: GCA_029379305.1
Location: JAHWGI010001278.1:660808-703931[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 7.2e-06 0.00062 20.8 1.0 1 23 85 107 85 107 0.98

2 22 0.42 36 5.8 5.9 1 23 113 135 113 135 0.98

3 22 1.2e-06 0.0001 23.3 2.2 1 23 141 163 141 163 0.99

4 22 3.6e-05 0.0031 18.7 0.2 1 23 169 191 169 191 0.98

5 22 0.0014 0.12 13.7 2.2 1 23 223 246 223 247 0.96

6 22 0.0019 0.16 13.3 0.9 2 23 362 384 361 384 0.96

7 22 1.4 1.2e+02 4.2 0.1 3 23 400 421 399 421 0.90

8 22 0.31 27 6.3 0.0 3 23 508 528 507 528 0.97

9 22 1.9 1.6e+02 3.8 0.1 2 12 549 559 548 561 0.86

10 22 0.0016 0.14 13.4 0.1 3 23 589 610 587 610 0.94

11 22 0.19 16 6.9 0.1 1 23 615 638 615 638 0.92

12 22 0.0014 0.12 13.7 0.5 1 23 781 804 781 804 0.98

13 22 0.00034 0.029 15.6 2.7 3 23 895 915 894 915 0.98

14 22 0.11 9.7 7.6 0.5 1 23 929 951 929 951 0.97

15 22 0.027 2.3 9.6 0.5 3 23 960 980 959 980 0.97

16 22 0.27 23 6.5 0.0 2 23 1152 1174 1151 1174 0.90

17 22 2.2 1.9e+02 3.6 0.2 1 23 1178 1200 1178 1200 0.94

18 22 0.62 53 5.3 0.3 2 23 1210 1231 1210 1231 0.95

19 22 0.0039 0.33 12.3 0.1 1 23 1239 1261 1239 1261 0.97

20 22 0.036 3.1 9.2 3.0 1 23 1268 1290 1268 1291 0.94

21 22 0.0043 0.37 12.1 0.1 2 23 1385 1407 1384 1407 0.96

22 22 0.47 40 5.7 0.0 2 23 1426 1448 1425 1448 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	7.2e-06	0.00062	20.8	1.0	1	23	85	107	85	107	0.98
2	22	0.42	36	5.8	5.9	1	23	113	135	113	135	0.98
3	22	1.2e-06	0.0001	23.3	2.2	1	23	141	163	141	163	0.99
4	22	3.6e-05	0.0031	18.7	0.2	1	23	169	191	169	191	0.98
5	22	0.0014	0.12	13.7	2.2	1	23	223	246	223	247	0.96
6	22	0.0019	0.16	13.3	0.9	2	23	362	384	361	384	0.96
7	22	1.4	1.2e+02	4.2	0.1	3	23	400	421	399	421	0.90
8	22	0.31	27	6.3	0.0	3	23	508	528	507	528	0.97
9	22	1.9	1.6e+02	3.8	0.1	2	12	549	559	548	561	0.86
10	22	0.0016	0.14	13.4	0.1	3	23	589	610	587	610	0.94
11	22	0.19	16	6.9	0.1	1	23	615	638	615	638	0.92
12	22	0.0014	0.12	13.7	0.5	1	23	781	804	781	804	0.98
13	22	0.00034	0.029	15.6	2.7	3	23	895	915	894	915	0.98
14	22	0.11	9.7	7.6	0.5	1	23	929	951	929	951	0.97
15	22	0.027	2.3	9.6	0.5	3	23	960	980	959	980	0.97
16	22	0.27	23	6.5	0.0	2	23	1152	1174	1151	1174	0.90
17	22	2.2	1.9e+02	3.6	0.2	1	23	1178	1200	1178	1200	0.94
18	22	0.62	53	5.3	0.3	2	23	1210	1231	1210	1231	0.95
19	22	0.0039	0.33	12.3	0.1	1	23	1239	1261	1239	1261	0.97
20	22	0.036	3.1	9.2	3.0	1	23	1268	1290	1268	1291	0.94
21	22	0.0043	0.37	12.1	0.1	2	23	1385	1407	1384	1407	0.96
22	22	0.47	40	5.7	0.0	2	23	1426	1448	1425	1448	0.94

Sequence Information

Coding Sequence: ATGCTGTTCAAGGGCAACAGCAGCCGCCTCGAGCTCCTCATCGAGAAGATCCAGGCCAACAAGGAGAACCACCATGTCAGCGAGCAGGACATCAAAGATGCCCTGGGCACGGACCCCGGCTCATCCTGGCGCTCCGAGACCCCCGAGGACGCGACGTCGCCCTCGCCGAGCAGCTGCGCGACGCCCAACTCGGCCACGGATGTGGCCGACTCGGAGCTCGCCTTCACCGTCGGGGTCACGGAGGGCACGCCGTACGCCTGCTCCTTCTGCGACAAGGCCTTCCCCCGGCTGTCCTACCTCAAGAAGCACGAGCAGACGCACAGCGACCAGATGCCGTTCCGCTGCGAGTTCTGCAGCCGGCTGTTCAAGCACAAGCGCAGCCGCGACCGCCACATCAAGCTGCACACGGGCGACAAGAAGTACCGCTGCAACCAGTGCGAGGCGGCCTTCAGCAGGAGCGATCACTTGAAGATCCACATGAAGACCCACGACAACCAGAAGCCCTTCCAGTGCACCGTGTGCAACCGCGGCTACAACACGGCCGCCGCGCTCACCTCGCACATGCAGAACCACAAGAAGGCGGCCGACTCGGCGTCCAACGGCGGCGCGTCCAACGGCCGCTCCTCGTCGCGCGCCTCGTCCGAGAACACGCCCTCGCCGGGGACCTTCCGCTGCCTGCAGTGCGGCGACTGCTTCCGGAAGGCCGAGGAGCTGCAGGCGCACATGGCCAGCCAGCACCACGTGGACATGgggtcgccgccgtcgcgctCGGCCAGCCGCGGGCTGCTGCTCGACTCGCCGCTGTCCCTGTCGCGGTCGCCCTTCCCGCTGCCCACCCTCTCGTGCCCGTACTGCACCAAGGACAACTTCGGCAGCATGGaggcgctgcagctgcacgtgCAGGCCAtgcacggcgcgctgctcaaCGGCGAGCTGCGCGACCTGGCGGCGCACGCGGCCCAGGCGGCGCGCTCCAGACCCTCCGTGGACGACCCCCTCCGCgggtcgccgacgacgccgtCGCCGTCGGGACCGACGCCGCccggcagcgcgagcagcgggggcggcggcggcggcgccatccCCTGCGAGCTCTGCACCATGAGGTTCAACTCCGTCTCGGGCCTCCACAAGCACCAGCGTTCTGTGCACGGCCTCGTCGGCCCCAAGTTCCTGGGCGACCCGTCGCCGATCCTGTGCGTGCACTGCTCGCTGCCCTTTCCGTCGTCCGCGGCCTTCGCCGAGCACTACGTGCTggtgcacggcggcggcgcgagccccGCTGCCCTGGCGGCCATGGCGACGAGATCTCCCTCCCCGTCACCCTCCGGCCGCGAGCgtgagcagcaggagaagcCCACCGACCTGAGCGTGAGCAGGAAGGcctcctcgcggcgcggcgcggacgaaAAGTCCCTCCTGGGGATGCCCCCGTCCAAACGCTCCAAGGCCAACCACGATCAACCGCCTCTCCTCATGGACGGTCTCATGGGTCGTGACTACGAGGCGGGACCGCTGCTGTGCAACCagtgcggcgccgcgctgcccgacttCGAGGCGTTCCGCGCCCACCTCAAGGCCCACCTGGAGGAccaccgccgcaGCCCTGCGAGCGCCtccccgggcggcgccggccacgGACTGAGCTGCCCGCACTGCGGCGTGCAGTTCCCGACAGCCACCCCCGAGGACCGCGTCGGCGTGGGCGCGCTCATCGAGCGGCACGTGGCCGAGCACTTCCTGGCCACTGCGACCGAGTTTGGCTGCCCGACCTGCAGCAAGCTTTTCGCCAAGCCCGACGAACTGCAGAAGCACCTCATGGACATCCACGCGCACCACCTGTACCGCTGCGCGCTCTGCCAGGAGCCGTTCGATTCGAAGGTGGCCATACAGGTTCACTTCGCCGTCAAGCACTCGTCCGCGTGCCCGCTGTTCCGCTGCACCGCCTGCCCCTCGTCGTCGGCTAGCTCCGTGTTCCGCTCGGACCGCGAGTTCGGCCTGCACGTGCGCACCGCGCACGCCTCGCacccgctgctcgccgccacGCACGCCATGCTGCTCCAGTTCCAGCAgaagctgcagcagcgggagcagcgcgacctgcagcgggAACGCGACCGCGAGCACAGGGACCGCGAACAGCAGCGAGAGCGGGACCgcgagcagcgagagcgagaccgcgagcagcagcgcgaccgGGACCGCGACCGGGACCGCGACCGGGAGGTGGGCCGCGAGGGAGAGGCCCCCGGACCGCAGCCGTTCCGCTGCCTGTTCTGCCGCGCGTCCTTCGGCTCCGAGCTCGAGCTGCAGTTCCACCTGCCCACCCACACGCGCCAGTACAGCTGCCCGCTCTGCCAGGAGACGTTCCAGGTCGAGTTCCTGCTCGACAAGCACATGCAGACGCAGCACTCGGGCCAGATCAACGGGCGGGACTCACcgccccccggggccggcggcggtgacgCCAAGGCCGCTAAGGCCAACGGCTGCGCCAACGGCGACGCGCCCGACCCGCTGCTCAACAACAACCAGGCGGGCGCGTCGTGCGACATCTGCGAGCGCGGCGACTTCGCCAGCGAGGCGGAGCTGGCCGCGCACCGCAAGCTGGCGCACCACAAGAAcggccagggcgcggccgcCAACGGCGCGGCCTCCAAGAACGGCGCCGTCAGCCTGCTGTGCGCCTACTGCAACGAGACGTGCAAGTCGCGGACGGAGCTGGAGAACCACATGAAGACGCACTCGCATCAGGGGACGGCCGGCCTCGGCGGCACGGGGAAGCACAAGTGCAACATCTGCGACGAGCTGTGCCCCTCGGCCGCGGTCCTGGCCGAGCACAAGCTGACCCACTGCAAGGTGGTGCAGGGCTCGGCGTGCACGGTGTGCCGCGCGTCGGTCACCACAGAGGAGCAGTTCCGCACACACCTGCGGCAGCACGCCGCGCAGACGGGCGGCAACCCGCAGCCGCAGGTGGGCGCAGGTGGGGGCGCGAGTGCGCCGCTGTGCCTGCCCGCGCAGTGCGTCATCTGCAGGCAGACGCTGGTGTCGGACGTGGAGGTGCGGCTGCACGCCCGCTTCCATCTGCagacgggcggcgcgccggccgcgggcggccagggcgccgaTCAGGCCTCGGCATCGCCggagaccgccgccgccgctggcgcaACCACGGCCACCTGCTGCATCTGCCTGCAGAGCGGCGAGGCCTCCACCATGGTGGCGACCAGCGCTGCTCCGCTGGCCGGACAGTCCGTGTCGTACGTGTGCGGGGACTGCTACCGGCGGCACTCCAAGCTGTCGTCGCGGTCGCCGCCCTCCACGCCCCAGGCCTCGCGGACCTCCTCGCCGTCGCGTCAAAGCCAGGACGACGGGAAGCCGGAGCCCCGAGGCACGACGACGTCCGTGACGTCGGAGAAGTCCGGCAGCCAGAACGTCTCGGGGCCTCAGCGCTGCGGGGAGTGCGGCGTGAAAACCGAGTCGGCTGCGGCCCTGGAGGCGCACGTGGCCGCCGCGCACAAGAACTCTTACCAGTGCATCAAGTGTCAGGCAAGCTTCGAGACGGAGCGAGACATCCGCCTGCACGTGTCAGCTCACCTGCTCGCCGAAGGCGCCGCCGCTAACGAGTGCCGGCTGTGCCGTCGCCAGCTGTCCACGCccttgcagctgcagctgcacctcaTCGAGCACACCTTCGCGGGCTGCGCCTCGTTCACCTGCTACATCTGCAGCGCCGTGTTCACGGCCGCCCGCGGGCTACAGTCGCACATGCTGGAGCAcgggctggcggcccggccgtACGACTGCTCGCACTGCGGACTGCGCTTCTTCTTCCGCGCCGAGCTGGACAACCACACCCTGGGGCACCACGCCCAGGCGCTGGCGCACGCCAGcctgcaggcgcaggcccaggtgcggcccggcgaggaggacgacgcggACTCGGCGCAGGCCTCGTTCTACCAGCACCTGTCctcgctcagcagcagcaacggccTGGACCTGCACTACTACACCGTgccgccgggcggcggcggggtggcggccgaGGTCGCGGCCAAGTCACCGCGCAAGTCTCCGGGCCGCAGCAACGGCCGAGGAGATCGCGAGGGACGGGcgcagggcctcggcctcggtggCCCCAAGCAGCGGTGCCTCATCTGCGGCAAGGAGCTGCCGTCGGCGCGCGCCCTCGCGTCGCACCTGCGCTCCAGCCACGGTATGCAGGACaacggcctgggcctggcgcaCGGCCTCGACAGCGACCTGCAGGTGTGCCTGCTCTGCAAGGAGGTGCTGCCCGACCGGGACGCGCTGCTCGTGCACTTGACCGTGCagcaccccgggccggggctggcgcagGGGCTTGCGCCGGGGCTGGCCTCCCCGCTGCAGCTCGAGGCGCACATGGCGCTGCTGAATCAGGCGCACGCCCCGCAGCCGATGCAGCACGTCAAGCAGGAGCCGGCCTCCGCCGTCGTCAAGGAGGAGGTCCACGACGAGGAGGCGTCGTCGTCCGTCGCGGCCGAGGAACTACGACCCggatcgccgccgccgccgccggtggccGCTGCTGCGCCCTCCTCGGCCCTGCCTCTGACCTCGCCCGGGAGGACCTCGGCGGAGGCAGAAGACCCCGAGAAGCAGGCGGAGGACGCTGTCGCTAACGCCGCGGAGACCGTCAAGGACGACGGCAAGGAAGACGTGGAGATCATTCAGGACGATAAGGGTAAGGTGATTAAAGGAGGTTTGGAATCTCCTCAGCAAGGGGCCGCAGAGAAAGAAGTGAGCGATAGTGATAAGTGA
Protein Sequence: MLFKGNSSRLELLIEKIQANKENHHVSEQDIKDALGTDPGSSWRSETPEDATSPSPSSCATPNSATDVADSELAFTVGVTEGTPYACSFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHIKLHTGDKKYRCNQCEAAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQNHKKAADSASNGGASNGRSSSRASSENTPSPGTFRCLQCGDCFRKAEELQAHMASQHHVDMGSPPSRSASRGLLLDSPLSLSRSPFPLPTLSCPYCTKDNFGSMEALQLHVQAMHGALLNGELRDLAAHAAQAARSRPSVDDPLRGSPTTPSPSGPTPPGSASSGGGGGGAIPCELCTMRFNSVSGLHKHQRSVHGLVGPKFLGDPSPILCVHCSLPFPSSAAFAEHYVLVHGGGASPAALAAMATRSPSPSPSGREREQQEKPTDLSVSRKASSRRGADEKSLLGMPPSKRSKANHDQPPLLMDGLMGRDYEAGPLLCNQCGAALPDFEAFRAHLKAHLEDHRRSPASASPGGAGHGLSCPHCGVQFPTATPEDRVGVGALIERHVAEHFLATATEFGCPTCSKLFAKPDELQKHLMDIHAHHLYRCALCQEPFDSKVAIQVHFAVKHSSACPLFRCTACPSSSASSVFRSDREFGLHVRTAHASHPLLAATHAMLLQFQQKLQQREQRDLQRERDREHRDREQQRERDREQRERDREQQRDRDRDRDRDREVGREGEAPGPQPFRCLFCRASFGSELELQFHLPTHTRQYSCPLCQETFQVEFLLDKHMQTQHSGQINGRDSPPPGAGGGDAKAAKANGCANGDAPDPLLNNNQAGASCDICERGDFASEAELAAHRKLAHHKNGQGAAANGAASKNGAVSLLCAYCNETCKSRTELENHMKTHSHQGTAGLGGTGKHKCNICDELCPSAAVLAEHKLTHCKVVQGSACTVCRASVTTEEQFRTHLRQHAAQTGGNPQPQVGAGGGASAPLCLPAQCVICRQTLVSDVEVRLHARFHLQTGGAPAAGGQGADQASASPETAAAAGATTATCCICLQSGEASTMVATSAAPLAGQSVSYVCGDCYRRHSKLSSRSPPSTPQASRTSSPSRQSQDDGKPEPRGTTTSVTSEKSGSQNVSGPQRCGECGVKTESAAALEAHVAAAHKNSYQCIKCQASFETERDIRLHVSAHLLAEGAAANECRLCRRQLSTPLQLQLHLIEHTFAGCASFTCYICSAVFTAARGLQSHMLEHGLAARPYDCSHCGLRFFFRAELDNHTLGHHAQALAHASLQAQAQVRPGEEDDADSAQASFYQHLSSLSSSNGLDLHYYTVPPGGGGVAAEVAAKSPRKSPGRSNGRGDREGRAQGLGLGGPKQRCLICGKELPSARALASHLRSSHGMQDNGLGLAHGLDSDLQVCLLCKEVLPDRDALLVHLTVQHPGPGLAQGLAPGLASPLQLEAHMALLNQAHAPQPMQHVKQEPASAVVKEEVHDEEASSSVAAEELRPGSPPPPPVAAAAPSSALPLTSPGRTSAEAEDPEKQAEDAVANAAETVKDDGKEDVEIIQDDKGKVIKGGLESPQQGAAEKEVSDSDK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00732690;
90% Identity: iTF_00732690;
80% Identity: -