Ffus015162.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Frankliniella fusca
Gene Symbol
-
Assembly
GCA_029379305.1
Location
JAHWGI010001031.1:1303551-1307818[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 3.2e-05 0.0028 18.8 0.6 1 23 239 261 239 261 0.95
2 15 0.0047 0.4 12.0 3.8 3 23 269 289 267 289 0.97
3 15 0.00019 0.016 16.4 0.1 1 23 428 450 428 450 0.98
4 15 0.066 5.7 8.4 0.8 1 23 456 479 456 479 0.96
5 15 0.00036 0.031 15.5 3.5 1 23 509 531 509 531 0.98
6 15 0.00013 0.011 16.9 0.1 1 23 551 573 551 573 0.97
7 15 0.2 17 6.9 0.1 1 23 579 602 579 602 0.94
8 15 0.0054 0.46 11.8 1.6 3 19 611 627 610 631 0.95
9 15 3.3e-05 0.0028 18.8 3.2 1 23 637 659 637 659 0.97
10 15 0.029 2.5 9.5 0.0 2 23 665 687 664 687 0.92
11 15 4.2e-06 0.00036 21.6 0.7 1 23 697 719 697 719 0.99
12 15 0.001 0.09 14.0 0.2 1 23 725 747 725 747 0.97
13 15 3.7e-05 0.0031 18.6 0.1 1 23 753 775 753 776 0.95
14 15 0.0018 0.15 13.3 0.2 1 23 790 812 790 812 0.97
15 15 0.0077 0.67 11.3 0.1 1 23 1090 1112 1090 1112 0.91

Sequence Information

Coding Sequence
ATGGCAGACTCAGCTGAAACTGAGCCCCAGTGGACGGTCAGTTGGGTAACagaagatgatgatgaggaagatgaagaagaggaaGCGGTCCCGGGTGGAGCTGGAGTCGATGGAGAAGTCATATTTGGTGTCACATCAGACTGTATACAATTGCCTCAAGACCAGGTTGTTGTGACCTCTGCAGGATTGACCGGTCTAGCTGGATTATCAGGATTGACAGGTTTGAAACCGTCTCCTGTATTTCTGGATGATGCCCACCATGAAGTTGTTGTCGGTGGAGATgtgATTGCAGGAGGAGACATTGTTAGTGGTGAACAGGTCATCACTGGTGATCAGATAGTCACAGATGGTGAAGTTATATCTGGTGGAGATATTATGTCTGGAGATGATGTGATTACTGGTGAAGATGTTATCACTGAAGGGGAAATTATGACTGGAGAAGAAGTTATTTCTGGAGGAGATTTAGTGGCTGGAGAAACTGTTGTGGATTCCTCCGGGCAATACCAGTATCAAGATCCAGAACTCTTTGGTGTTCAAGTCATTGAAGAGGAAGTCATAAGTGAAGCATGGGAAACCGGACAGACAGGACATGATGGTCAAGTGTTGGTCTCAACAGTAAATGTTCAATCTGAATGGGGAGAAGCGGGCACAGAAGATGACATGCTTGTACCTCTACCTCAAGATCAACAAACAGGGGCAAGCCAAGTAAGACCATACCCTTGTGACTTTTGCTCGAGGCGCTTCTCAAAGAAAGCCAACCTTATGAATCATATGGTTGCTCACCAAGTGGAGAGACCCTATGGCTGCAATTTATGTGGTGCCAGGTATCGCAGAAAATGTGATTTGCACAATCATTTAAAGATACATGCATATGCTCCAGAAGCCACAGAACAACAAGAGGAGGATGAAGATGATCCAATGTCTCCACCTCACAGATTAGATAGTCGCATGGATGGCAGGCAAAAGCAGGTTTCTGGAGCTCAAAAACGAAGGCGCCCATCAGAAAGTTTCGGAGAACCCCCTGAAGTAAGGGGCAAGAAGAAACCTGGTAAAAAACCTGGCAAACCTAAAGGAGCTGGGCCAGGGCGCAAGAAGATACTTCCTGGTGAACGACAGCCTCGTTCATCTTATGTTGATGAAGATATGAGACTAATGACGGAATTAGCTTCACGTGGTGGTGGAGATGAGTCCAATGGTTACTATATTAATGGAGCAGTTCAAGATCAGAAGCCACCAGAACCCATACCCCCTCAGTGGCCTGTCACTGATCCTAGTCGTCCCTACGTTTGTCAGCATTGTGGAATTGGATTTGCTCGTGCGAAAGCTCTTGGTTCTCATGCAAGAATTCATGCTGGTGATAGTCCTTTTGAGTGTTCCTCATGCGGTGAAATGTTTTGGGATGTGCATTTGCTTCGCGAACATACAAGGTTGAAACATCCTGGTGCAGGAGTGAAAGTTGAacgggaggaagaagaggaagaagtcAGTGATCGGCCATACACAGGAGATGAACGCTTTGGAAACTTCCGGTGTCAAACATGTGGTCTTGAGTTCCACAGGCAGGATCTTCTTAAGAAACACTCCAGgtTACATTTGAAGATGGAACTGGGACCCTCAGAACCTGATTTGGAAAGTGGATCTGGACGTGTCTACTCCTGCGGTGTATGCGGTCAATCATACAGCTCTCGTAGAGCACTTTTGGCTCACACTGAGTCTCACTCTCGCTATCAACCACATCGTTGCATGTTGTGTGGGCAAGGATTTCCAGATGACCAGTTGGTCGCTGCTCATGTGCGTGAGAGACATGCTGGTGCAATACCAGCCAATGCTTGCCAGTTGTGTGGAAAGACATGCAAGGACCGCAGGGCTCTTCAAAAACACTCTTGGGTTCATTCATCAGAACGATCATATTCTTGCCCCAAGTGTGACAAGCGTTTCCATTCTCGAGCAAGGCTTCGTAGACACATGGTCTCTCACCGTGAACGAGTTCTTACATGTGCTGAGTGTGGTGCTACTTTCCCTGATGGGCGCTCTCTTGTTAACCATCGCTTAGCTGTGCACAGTCAACGAGATGCTGCTGGTCGTCTGTTCCAGTGCCGCGACTGCGGTAAAACCTTTGGATCTCGGAGTAGTCAACAAATTCATATTCGAATCCATACTGGAGAACGTCCTTATGCATGTCGCTTCTGCTGGAAGGCTTTTGCTGATGGTGGAACACTTCGTAAACATGAACGAATTCACACTGGTGAAAAGCCTTATGCTTGCCCCATTTGTCCCAGAGCCTTCAATCAAAGGGTTGTTCTTAGAGAACATATCCGAGCTCATCACTCGGGCCCAGACCCAAAGCATGGATTAGGTGGTGGTGGGTACGTGTGTAAAGTTTGTGGAATGGCCCTTATTACTTCAGAAGATCTATGTTTGCATTTGGTGAAGCATTCAGATGAAAATACCGCCCGTCATCGTAAACCTGCCCTCGCCCCTCGCAAATACAAGAGGCGCCGTAGGCTGAAGCCCCATGAAATGGAATATGGAGTTGATGGTTCACCTGACGATCCGGATTCAGATGCCTCCTCAGGGGGAAGGAAGTCAATGAAACCTGAACCAGATTATGATTCGGTAGTCCGAACATTTGATGCTGCGATGGATACTATTAACTCTATGGTGGGGAAAACCAAAGTAAAGAAGAAGCGCAAGATGAAACACACTGGACCTCCCGCTGATTCGCACGAGCCTGGTTCCAGTCTGGCTGAGCCACCTACTCTTCTCAGCCCTCCTTCACGGATAGATGACAATGTAATGCGGTCACAAAGCGCTATTCGAATTAGACCAAGAATCAAGAATGTGTCTGCAGCTCAGCGAACTCCTGTCAGACCACCCAAAGCGACCAAGTCATCACCATTACCAATGTCTCCTCCACCTGCTCCACCTCCACTTGAGGATCATATTCTCTCATCTCCTCCACCGCCAGCAACACCCCCACCACCTTCAACTGGTGAGGATCCATTTAAAGTAAGGAAAGGGCCAAGAACTAAAAACGTCAACTACCATCATGAAAAAAGACCAGCCAAACCCCCACCAGCAAAATTCCCAAAGGAGCCTAAAACTCCTAAAGTACGGGGGAGGAAGCCAATACGGAAGCCCAAGTTTCTCACTCAGAATGGTGTAccagacaaaaaaaaagcagcGGCCAGTGCTGAAACAACAGTTTATGCTGAGAGTGTGAAGGTTGAACCTGTCGCCCAAgtgaaagaagaagcaaaggaAGAATTTAAGTGTGAAATATGTGGGGAAATTTTCTACACTAGACCTGAGTTGCTGTTTCATGTTTCTATTCATATTTAA
Protein Sequence
MADSAETEPQWTVSWVTEDDDEEDEEEEAVPGGAGVDGEVIFGVTSDCIQLPQDQVVVTSAGLTGLAGLSGLTGLKPSPVFLDDAHHEVVVGGDVIAGGDIVSGEQVITGDQIVTDGEVISGGDIMSGDDVITGEDVITEGEIMTGEEVISGGDLVAGETVVDSSGQYQYQDPELFGVQVIEEEVISEAWETGQTGHDGQVLVSTVNVQSEWGEAGTEDDMLVPLPQDQQTGASQVRPYPCDFCSRRFSKKANLMNHMVAHQVERPYGCNLCGARYRRKCDLHNHLKIHAYAPEATEQQEEDEDDPMSPPHRLDSRMDGRQKQVSGAQKRRRPSESFGEPPEVRGKKKPGKKPGKPKGAGPGRKKILPGERQPRSSYVDEDMRLMTELASRGGGDESNGYYINGAVQDQKPPEPIPPQWPVTDPSRPYVCQHCGIGFARAKALGSHARIHAGDSPFECSSCGEMFWDVHLLREHTRLKHPGAGVKVEREEEEEEVSDRPYTGDERFGNFRCQTCGLEFHRQDLLKKHSRLHLKMELGPSEPDLESGSGRVYSCGVCGQSYSSRRALLAHTESHSRYQPHRCMLCGQGFPDDQLVAAHVRERHAGAIPANACQLCGKTCKDRRALQKHSWVHSSERSYSCPKCDKRFHSRARLRRHMVSHRERVLTCAECGATFPDGRSLVNHRLAVHSQRDAAGRLFQCRDCGKTFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACPICPRAFNQRVVLREHIRAHHSGPDPKHGLGGGGYVCKVCGMALITSEDLCLHLVKHSDENTARHRKPALAPRKYKRRRRLKPHEMEYGVDGSPDDPDSDASSGGRKSMKPEPDYDSVVRTFDAAMDTINSMVGKTKVKKKRKMKHTGPPADSHEPGSSLAEPPTLLSPPSRIDDNVMRSQSAIRIRPRIKNVSAAQRTPVRPPKATKSSPLPMSPPPAPPPLEDHILSSPPPPATPPPPSTGEDPFKVRKGPRTKNVNYHHEKRPAKPPPAKFPKEPKTPKVRGRKPIRKPKFLTQNGVPDKKKAAASAETTVYAESVKVEPVAQVKEEAKEEFKCEICGEIFYTRPELLFHVSIHI*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01435280; iTF_00733371;
90% Identity
iTF_00733371;
80% Identity
-