Tpal014001.1
Basic Information
- Insect
- Thrips palmi
- Gene Symbol
- -
- Assembly
- GCA_012932325.1
- Location
- NW:1028653-1035631[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.9e-05 0.0012 18.8 0.6 1 23 239 261 239 261 0.95 2 15 0.0057 0.18 12.0 3.8 3 23 269 289 267 289 0.97 3 15 0.00022 0.0069 16.5 0.1 1 23 429 451 429 451 0.98 4 15 0.08 2.5 8.4 0.8 1 23 457 480 457 480 0.96 5 15 0.00014 0.0046 17.0 2.6 1 23 510 532 510 532 0.98 6 15 0.00016 0.0051 16.9 0.1 1 23 552 574 552 574 0.97 7 15 0.24 7.6 6.9 0.1 1 23 580 603 580 603 0.94 8 15 0.0065 0.21 11.8 1.6 3 19 612 628 611 632 0.95 9 15 4e-05 0.0013 18.8 3.2 1 23 638 660 638 660 0.97 10 15 0.034 1.1 9.5 0.0 2 23 666 688 665 688 0.92 11 15 5.1e-06 0.00016 21.6 0.7 1 23 698 720 698 720 0.99 12 15 0.0013 0.04 14.1 0.2 1 23 726 748 726 748 0.97 13 15 4.4e-05 0.0014 18.6 0.1 1 23 754 776 754 777 0.95 14 15 0.0021 0.068 13.3 0.2 1 23 791 813 791 813 0.97 15 15 0.0093 0.3 11.3 0.1 1 23 1085 1107 1085 1107 0.91
Sequence Information
- Coding Sequence
- ATGATGGCTGACTCGGCTGAAACTGAGCCTCAGTGGACAGTGAGTTGGGTGACAGAGGATGAtgatgaggaggaggaagaagaggccGTTACTGGCGCCTCAGGAGTTGAAGGTGAAGTCATCTTTGGTGTGGCATCTGATTGTGTTCAGCTACCTCAAGATCAAGTAGTTGTGACATCTGCGGGATTGACTGCTTTAGCAGGACTTAAACCCTCCCCAGTTTTCTTGGATGATGCTCACCATGAAGTTGTTGTTGGTGGAGATGTAAGTCTCTTCAATTTTCAGGTTATTACTGGCGGAGATATTGTAAGTGGAGAACAAGTTATTGAAGGTGACCACATAGTAACAGATGGCGAAGTTATTTCGGGAGGTGACATTATGTCTGGAGATGATGTTATTACTGAGGATGTTATCACTGAAAGTGAAATTATGACTGGAGAAGAAGTAATTGCTGGAGGTGAGCTGGTTGATGGAGAAACAGTAGTGGACTCATCTGGAGGGCAATACCAGTACCAAGACCCTGAGCTATTTGGAGTTCAAGTTATTGAAGAAGAAGTCATAAGTGAAGCCTGGGAAACTGGCCAAGCTGGTCATGATGGTCAAgTCCTGGTCTCTACAGTTGCCCAATCTGAATGGGGTGATGCTGGAACAGAAGATGATATGCTTGTGCCTCTTCCTCAAGACCAGCAGACAGGTGCAAGCCAAGTCAGGCCATATCCGTGTGACTTTTGCTCTCGACGCTTCTCTAAAAAGGCAAATCTCATGAACCACATGGTTGCTCATCAAGTGGAGCGTCCTTATGGATGTAACTTGTGTGGCGCTCGCTATCGCCGTAAATGTGACTTGCATAATCACCTGAAGATACATGCATATGCTCCTGAAGCTACTGAACAacaagaagaggaggaagaagatgaCCCTCTGTCTTCCCCACGGAGACTAGATGTTCGAATGGATGGCAGACAGAAGCAAGGGCCAGCACAGAAACGCAGACGAGCATCAGAAAGCTTCAGTGAGCCTGTCGAAGCTAGAGTGAAAAAGAAGCCCGGTAGGAAACCTGGTAAACCCAAAGGTGCCACGGGTCCTGGCCGCAAGAAATTGCTCCCAGCCGAGAGACAGCCTCGTTCGTCGTATGTGGATGAAGATATGCGCCTTATGACAGAATTAGCTTCTCGTGGTGGAGGTGAGACCTCAAACGGATATTATGTAAATGGGGCAGTTGAAGATCAGAAACCTCCAGAGCCTTTGCCTCCCAACTGGCCGGTTAAAGACCCTAGTCGTCCCTATGTTTGTCAACATTGTGGAATTGGATTTGCTCGTGCCAAGGCTCTTGGATCTCATGCAAGAGTTCATGCTGGCGATAGCCCCTTTGAATGTTCATCATGCGGGGAAATGTTCTGGGATGTCCATCTCCTGCGGGAACACACGAGGTTAAAACATCCAGGTGGTGGTGTCAAAGTTGAAcgtgaagaagaagaggaagaggtAACTGACCGGCCATATACAGGAGATGAGAGATTTGGAAATTTCCGTTGTCAAACATGCGGCCTTGAATTCCATCGGCAGGATCTACTTAAAAAGCATGCCAGGTTGCACATGAAGATGGAGATGGGCCCTCTTGAGCCTGAGGTAGAAAGTGGGTCTGGTCGTGTTTACTCATGTGGTGTTTGCGGCCAATCATACAGTTCAAGGAGAGCACTTCTGGCACACACTGAGTCTCACTCTCGGTATCAGCCACATCGCTGCATGTTATGTGGCCAAGGTTTCCCTGATGATCAGTTAGTAGCTGCCCATGTCCGAGAACGCCATGCTGGTGCTATACCTGCTAATGCTTGCCAGTTGTGCGGAAAAACATGCAAAGATCGCCGAGCTTTGCAGAAACATTCTTGGGTTCATTCATCTGAGCGATCCTATTCTTGTCCCAAATGTGACAAGCGATTTCACTCAAGAGCAAGACTTCGCAGGCATATGGTTTCTCATCGTGAGCGAGTTCTCACCTGTGCTGAATGTGGTGCAACCTTCCCTGACGGCCGTTCTCTAGTGAACCATCGCTTAGCAGTGCATAGCCAACGAGATGCGGCAGGCCGGTTGTTCCAATGTCGCGATTGTGGCAAAACATTTGGGTCCCGTAGCAGTCAGCAAATTCATATCCGAATCCACACAGGAGAGCGTCCATATGCCTGCCGATTCTGCTGGAAGGCCTTTGCTGATGGTGGAACACTCCGCAAACATGAACGGATACATACTGGTGAAAAACCTTATGCTTGCCCCATTTGTCCCAGGGCTTTCAATCAAAGAGTTGTACTCAGAGAGCACATTCGTGCACACCACTCTGGACCTGACCCTAAGCACtgcgctggtggtggtggataTGTGTGCAAAGTATGTGGAATGGCCCTCATTACCTCAGAGGACCTTTGTCTGCACTTGGTGAAGCACTCCGATGAAAATACGGCTCGACACCGCAAACCAGCTTTAGCACCACGCAAGTACAAACGGCGCCGCAGGCTGAAGCCCCATGAAATGGAGTATGGAAACGAAGATTCGCCTGATAATGAATCAGATTCAGACGCTGGTGTTGTCAGGAAAGCTAGTAAGCCGCAACCAGACTACGATACTGTTGCCAGAACCTTTGATGCTGCCTTGGACACAATCAACTCCATGGTAGGGCGGACCAAAGTTAAAAAGAAGCGCAAAATGAAACACACAGGACCAGCTTTGGACGAAAACGAAGCGGGTTCAAGCATGGTTGATACAGGACTCCTCAGCCCTCCAAGGCTGGAGGACAATGGAATGAGGCCACCGGGGGGCGCCATTCGCATCAGACCAAGAATAAAGAATGTTTCTGCTGCACAGCGTACACCAGCCAGGCCTCCCAAAGCGACCAAGCTGTCACCGCCCCCCGTGTCTCCTCCCCCCGTTCCACTGGAGGATGACCTGCTCTTGTCTCCTCAACCACCAGCAGGCCCACCCTCCACTGATGATCCATTGAAAATCAGGAAAGGACCCAGAACCAAGAATGTCAACTACCATCATGAAAAGAGGCCGCAGAAACCTCCACCAGCTAAATTCCCGAAAGAGCCAAAGACACCTAAAGTTCGCGGACGAAAGCCCATTCGAAAGCCTAAATTTCTCACTCAAAACGGAATGCAAGAGAAAAAAGCATCTGCTAAAGCTGAACCCACTACTGTATTTGTTGAAAGTGTAAAGGTTGAACCTGTTGCTCAGGTGAAGGAAGAGGTGAGGGAGGAGTTTAAATGTGAAATTTGTGGAGAAATCTTTTACACCAGACCAGAGCTGCTGTTTCATGTTTCAATTCACATTTAA
- Protein Sequence
- MMADSAETEPQWTVSWVTEDDDEEEEEEAVTGASGVEGEVIFGVASDCVQLPQDQVVVTSAGLTALAGLKPSPVFLDDAHHEVVVGGDVSLFNFQVITGGDIVSGEQVIEGDHIVTDGEVISGGDIMSGDDVITEDVITESEIMTGEEVIAGGELVDGETVVDSSGGQYQYQDPELFGVQVIEEEVISEAWETGQAGHDGQVLVSTVAQSEWGDAGTEDDMLVPLPQDQQTGASQVRPYPCDFCSRRFSKKANLMNHMVAHQVERPYGCNLCGARYRRKCDLHNHLKIHAYAPEATEQQEEEEEDDPLSSPRRLDVRMDGRQKQGPAQKRRRASESFSEPVEARVKKKPGRKPGKPKGATGPGRKKLLPAERQPRSSYVDEDMRLMTELASRGGGETSNGYYVNGAVEDQKPPEPLPPNWPVKDPSRPYVCQHCGIGFARAKALGSHARVHAGDSPFECSSCGEMFWDVHLLREHTRLKHPGGGVKVEREEEEEEVTDRPYTGDERFGNFRCQTCGLEFHRQDLLKKHARLHMKMEMGPLEPEVESGSGRVYSCGVCGQSYSSRRALLAHTESHSRYQPHRCMLCGQGFPDDQLVAAHVRERHAGAIPANACQLCGKTCKDRRALQKHSWVHSSERSYSCPKCDKRFHSRARLRRHMVSHRERVLTCAECGATFPDGRSLVNHRLAVHSQRDAAGRLFQCRDCGKTFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACPICPRAFNQRVVLREHIRAHHSGPDPKHCAGGGGYVCKVCGMALITSEDLCLHLVKHSDENTARHRKPALAPRKYKRRRRLKPHEMEYGNEDSPDNESDSDAGVVRKASKPQPDYDTVARTFDAALDTINSMVGRTKVKKKRKMKHTGPALDENEAGSSMVDTGLLSPPRLEDNGMRPPGGAIRIRPRIKNVSAAQRTPARPPKATKLSPPPVSPPPVPLEDDLLLSPQPPAGPPSTDDPLKIRKGPRTKNVNYHHEKRPQKPPPAKFPKEPKTPKVRGRKPIRKPKFLTQNGMQEKKASAKAEPTTVFVESVKVEPVAQVKEEVREEFKCEICGEIFYTRPELLFHVSIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00732043;
- 90% Identity
- -
- 80% Identity
- -