Basic Information

Insect: Frankliniella occidentalis
Gene Symbol: -
Assembly: None
Location: ML763044.1:765892-773584[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.7e-05 0.0015 18.8 0.6 1 23 239 261 239 261 0.95

2 15 0.0039 0.21 12.0 3.8 3 23 269 289 267 289 0.97

3 15 0.00016 0.0086 16.4 0.1 1 23 428 450 428 450 0.98

4 15 0.055 3 8.4 0.8 1 23 456 479 456 479 0.96

5 15 9.9e-05 0.0054 17.0 2.6 1 23 509 531 509 531 0.98

6 15 0.00011 0.006 16.9 0.1 1 23 551 573 551 573 0.97

7 15 0.16 8.9 6.9 0.1 1 23 579 602 579 602 0.94

8 15 0.0045 0.24 11.8 1.6 3 19 611 627 610 631 0.95

9 15 2.7e-05 0.0015 18.8 3.2 1 23 637 659 637 659 0.97

10 15 0.024 1.3 9.5 0.0 2 23 665 687 664 687 0.92

11 15 3.5e-06 0.00019 21.6 0.7 1 23 697 719 697 719 0.99

12 15 0.00087 0.047 14.0 0.2 1 23 725 747 725 747 0.97

13 15 3e-05 0.0016 18.6 0.1 1 23 753 775 753 776 0.95

14 15 0.0015 0.079 13.3 0.2 1 23 790 812 790 812 0.97

15 15 0.0064 0.35 11.3 0.1 1 23 1090 1112 1090 1112 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.7e-05	0.0015	18.8	0.6	1	23	239	261	239	261	0.95
2	15	0.0039	0.21	12.0	3.8	3	23	269	289	267	289	0.97
3	15	0.00016	0.0086	16.4	0.1	1	23	428	450	428	450	0.98
4	15	0.055	3	8.4	0.8	1	23	456	479	456	479	0.96
5	15	9.9e-05	0.0054	17.0	2.6	1	23	509	531	509	531	0.98
6	15	0.00011	0.006	16.9	0.1	1	23	551	573	551	573	0.97
7	15	0.16	8.9	6.9	0.1	1	23	579	602	579	602	0.94
8	15	0.0045	0.24	11.8	1.6	3	19	611	627	610	631	0.95
9	15	2.7e-05	0.0015	18.8	3.2	1	23	637	659	637	659	0.97
10	15	0.024	1.3	9.5	0.0	2	23	665	687	664	687	0.92
11	15	3.5e-06	0.00019	21.6	0.7	1	23	697	719	697	719	0.99
12	15	0.00087	0.047	14.0	0.2	1	23	725	747	725	747	0.97
13	15	3e-05	0.0016	18.6	0.1	1	23	753	775	753	776	0.95
14	15	0.0015	0.079	13.3	0.2	1	23	790	812	790	812	0.97
15	15	0.0064	0.35	11.3	0.1	1	23	1090	1112	1090	1112	0.91

Sequence Information

Coding Sequence: ATGGCAGACTCAGCTGAAACTGAGCCCCAGTGGACAGTTAGTTGGGTGACAGAGgacgatgatgaagaagatgaggaagaagaagcagTCCCAGGGGCTGGAGTTGATGGGGAGGTCATATTTGGAGTCACGTCAGACTGTATTCAGTTGCCGCAAGACCAGGTAGTTGTAACCTCAGCGGGCCTAAGTGGTCTAGCTGGATTAGCAGGATTGACAGGTTTGAAACCGTCTCCTGTATTTTTGGATGATGCCCACCATGAAGTTGTTGTCGGTGGAGATGTAATTGCTGGAGGAGACATTGTTAGTGGTGAACAAGTTATAACTGGTGATCAGATAGTCACAGATGGGGAAGTTATAACCGGCGGAGATATTATGTCAGGGGACGATGTTATCACTGGTGAAGATGTCATCACAGAAAGTGAAATAATGACTGGAGAAGAAGTTATCACTGGAGGAGATTTAGTAGATGGGGAAACTGTTGTGGATTCTTCTGGAGGTCAATACCAGTATCAAGACCCTGAGCTCTTTGGTGTTCAAGTTATTGAAGAAGAGGTCATCAGTGAAGCATGGGAAACTGGACAAACAGGCCATGATGGTCAAGTTTTAGTCTCTACAGTCAATGTTCAATCAGAGTGGGGAGAGGCTGGAACAGAAGATGATATGTTAGTACCCCTGCCTCAAGACCAACAAACTGGGGCGAGCCAAGTTAGACCATATCCCTGTGACTTTTGCTCTCGCCGATTCTCTAAAAAAGCAAATCTTATGAATCACATGGTTGCTCACCAAGTGGAGCGCCCTTATGGTTGCAATTTATGTGGTGCAAGATATCGTCGTAAATGTGATTTGCACAACCATTTGAAGATACATGCATACGCTCCTGAAGCAGCAGAGCAacaggaggaagatgaggatgatCCAATGTCCCCCCCACACAGTTTAGACACTCGCATGGTTGGGAGACAAAAACAGGTTCCTGGACCTCCAAAACGAAGGCGTGTTGCTGAAAGCTTTGGTGAACCAGCTGAACCAAGAGGCAAAAAGAAACCTGGCAAGAAACCTGGTAAACCTAAgggagctgggccggggcgtAAGAAACTCATTGCTGGCGATCGGCAGCCCCGCTCTTCTTACGTTGATGAAGATATGCGACTCATGACCGAATTAGCTTCACGCGGTGGTGGAGATGAGTCCAATGGCTACTACATAAATGGGGCAGTTGAGGAACAGAAAGCACCTGAGCCTATTCCGCCTCAGTGGCCTGTCACTGATCCTAGTCGCCCTTATGTGTGCCAGCATTGCGGAATTGGATTTGCTCGAGCTAAAGCACTTGGATCTCATGCAAGAATTCATGCTGGTGATAGTCCATTTGAATGTTCATCATGCGGAGAAATGTTCTGGGATGTACATTTGCTACGTGAGCATACCAGGCTGAAACACCCTGGTGCAGGTGTAAAAGTTGAacgtgaggaggaggaagaggagatcACTGATCGTCCATATACAGGAGATGAGCGTTTTGGCAACTTTAGATGTCAGACTTGCGGTCTTGAGTTCCACAGACAGGATCTCCTTAAGAAACATGCTAGGTTACACATGAAGATGGACATGGGTCCTCCTGAACCAGAAATGGAAGGTGGATCTGGTCGAGTTTACTCTTGTGGAGTCTGTGGTCAATCATATAGCTCTCGAAGAGCTCTTCTGGCCCACACAGAGTCTCACTCTCGCTATCAGCCTCATCGCTGCATGTTGTGCGGTCAAGGTTTCCCAGATGACCAATTGGTTGCTGCCCATGTGCGTGAGAGACATGCTGGTGCTATACCAGCCAATGCTTGCCAACTGTGTGGAAAAACTTGTAAGGATCGTAGGGCTCTTCAGAAACATTCTTGGGTTCACTCATCAGAACGATCATACTCTTGCCCTAAGTGTGACAAGCGTTTCCATTCTAGAGCAAGGCTTCGAAGACATATGGTTTCTCACCGTGAACGAGTTCTTACTTGTGCTGAGTGTGGCGCTACCTTCCCTGATGGGCGGTCTCTTGTAAATCACCGCTTGGCTGTACACAGTCAAAGAGATGCCGCGGGTCGCTTGTTTCAATGCCGCGACTGCGGCAAAACCTTCGGATCCCGGAGTAGTCAACAAATCCATATTCGGATTCACACTGGAGAACGACCCTATGCTTGCCGCTTCTGCTGGAAAGCTTTTGCTGATGGCGGAACACTCCGCAAACATGAACGCATCcatactggtgaaaagccatatgCTTGCCCAATTTGTCCAAGAGCATTCAATCAAAGGGTTGTGTTGAGGGAACATATCCGAGCTCATCACTCAGGGCCCGACCCAAAGCATGGAGCAGGCGGTGGAGGGTATGTTTGTAAAGTTTGTGGAATGGCACTTATTACTTCAGAAGATCTTTGTTTGCACTTGGTGAAGCATTCAGATGAAAATACTGCTCGTCATCGTAAACCTGCTCTTGCTCCTCGCAAGTACAAGAGGCGACGTAGGCTAAAGCCCCATGAAATGGAATATGGTAATGATGGTTCACCTGATGATCCTGATTCAGATGCGTCCACAACAGGGGGTAGAAAATTAATTAAGCCTGAACCAGATTATGATTCAGTTGTTCGAACATTTGATGCTGCCATGGATACCATCAATTCCATGGTAGGTAGGACCAAAGTAAAGAAGAAGCGTAAGATGAAACACACAGGACCTCCAGCTGATCTGCACGAACCCGGCTCCAGTCTGGTTGAGCCACCTGCTCTTCTCGGTCCTCAATCAAGAATAGATGATAATGGAATGAGGTCACCAAGTGCTATCCGAATTAGGCCAAGAATAAAGAATGTTTCAGCTGCTCAACGAACTCCTGTAAGGCCTCCTAAAGCAACTAAGTCATCACCATCACCGATgtctcctcctcttgctccacCTCCATTAGAAGACCATCTGCTCTCTtcaccgcccccaccaccaacaccaccaccaccttcaacAACTGAGGATCCATTTAAAGTAAGAAAAGGGCCAAGAACTAAAAATGTCAACTACCATCATGAAAAGAGACCAGCCAAACCCCCTCCAGCTAAGTTTCCAAAAGAGCCAAAGACTCCTAAGGTTCGAGGTCGAAAGCCCATACGGAAGCCCAAGTTTCTTACTCAGAATGGAATGCAAGATAAGAAAGCAGCTGCTAGTGCTGAAACAACAGTTTATGTAGAGAGTGTAAAGGTTGAACCTGTTGCACAAGTCAAAGAAGAAGCAAAGGAAGAATTTAAATGTGAAATCTGTGGGGAAATTTTCTACACTAGACCTGAGTTGCTGTTTCATGTTTCTATCCATATTTAA
Protein Sequence: MADSAETEPQWTVSWVTEDDDEEDEEEEAVPGAGVDGEVIFGVTSDCIQLPQDQVVVTSAGLSGLAGLAGLTGLKPSPVFLDDAHHEVVVGGDVIAGGDIVSGEQVITGDQIVTDGEVITGGDIMSGDDVITGEDVITESEIMTGEEVITGGDLVDGETVVDSSGGQYQYQDPELFGVQVIEEEVISEAWETGQTGHDGQVLVSTVNVQSEWGEAGTEDDMLVPLPQDQQTGASQVRPYPCDFCSRRFSKKANLMNHMVAHQVERPYGCNLCGARYRRKCDLHNHLKIHAYAPEAAEQQEEDEDDPMSPPHSLDTRMVGRQKQVPGPPKRRRVAESFGEPAEPRGKKKPGKKPGKPKGAGPGRKKLIAGDRQPRSSYVDEDMRLMTELASRGGGDESNGYYINGAVEEQKAPEPIPPQWPVTDPSRPYVCQHCGIGFARAKALGSHARIHAGDSPFECSSCGEMFWDVHLLREHTRLKHPGAGVKVEREEEEEEITDRPYTGDERFGNFRCQTCGLEFHRQDLLKKHARLHMKMDMGPPEPEMEGGSGRVYSCGVCGQSYSSRRALLAHTESHSRYQPHRCMLCGQGFPDDQLVAAHVRERHAGAIPANACQLCGKTCKDRRALQKHSWVHSSERSYSCPKCDKRFHSRARLRRHMVSHRERVLTCAECGATFPDGRSLVNHRLAVHSQRDAAGRLFQCRDCGKTFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACPICPRAFNQRVVLREHIRAHHSGPDPKHGAGGGGYVCKVCGMALITSEDLCLHLVKHSDENTARHRKPALAPRKYKRRRRLKPHEMEYGNDGSPDDPDSDASTTGGRKLIKPEPDYDSVVRTFDAAMDTINSMVGRTKVKKKRKMKHTGPPADLHEPGSSLVEPPALLGPQSRIDDNGMRSPSAIRIRPRIKNVSAAQRTPVRPPKATKSSPSPMSPPLAPPPLEDHLLSSPPPPPTPPPPSTTEDPFKVRKGPRTKNVNYHHEKRPAKPPPAKFPKEPKTPKVRGRKPIRKPKFLTQNGMQDKKAAASAETTVYVESVKVEPVAQVKEEAKEEFKCEICGEIFYTRPELLFHVSIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00732043;
90% Identity: iTF_00732043;
80% Identity: -