Basic Information

Insect: Formica aserva
Gene Symbol: -
Assembly: GCA_037039905.1
Location: JAXRKO010000003.1:7632203-7639980[-]

Transcription Factor Domain

TF Family: MBD
Domain: MBD domain
PFAM: PF01429
TF Group: Unclassified Structure
Description: The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.5e-14 1.6e-10 41.9 0.3 10 70 271 329 266 333 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.5e-14	1.6e-10	41.9	0.3	10	70	271	329	266	333	0.90

Sequence Information

Coding Sequence: ATGGACGGCGCGAACGTGAATGGCGGGAACGCCGAAGTATCGCGCGAGGATTCTAACCTCGAAAGCGGCGACGGTGGTGATACTACCGTGCCAATGGAGGAATCGCCGCCGAGCAGCAAAGCAGTGGCCGGTGACGCGGACAGTAACGCGCAAGAGGTTAACGGCGATCTGAAAGGCTCGCCCAAGAAACACGGTTCGCCCTTTCCGCGCAGGAAGATGAAAAAGCTCAAGGCCAACTCCACGAGCACCATCGAGAGCGACGCGACGGAGCCGCTCGGAACGAGGGGACGTAAGCGTAAATTCTCGGAACTCGAGGACGTCAGCTCCGAGGACTCGGAGTTCAACGGCTTCGATTCGAAGGGGCTCGAATTGCAACCGGGTAGTCACGTTCTGAAGAAACTCATTGCTGAAGCTGAAATGGCAGAAGTCCAACTTGTAAAACGTGTGAGATATTCAAGAAGGAGCTTTGACATTagaggaaaaagagaagaCGATCAAGATTCTGACGATATGAAAACCTATATTTACGAGACAGATAGTATGGAACATTTGAGTATAGGAAAGATTAAAAAGGAAAAGGAGTCTGACAAATCAGAAACAGATTCCATtgatataccaaatagcatagATTCTGAAGTGGAACCaaacaaaattgaaataactTCCATTAGATCAGCAAATTCGTCATCAGCTGCAAGTAGCCCATCTGCGATATCACAAAAATCAAAAAGTAGTCGCGTTTCTCGTGGCGCCAGTCCAGGAGGAAGGCAAAAAGCTCCTGTTGATATGTCAAATCCATTATACAAAGAGCCATTTAAATATGGATGGAAGCGAGAGCTAGTATTTAGAGCTAGTAATGATTCCTCTTTTAAAAGAATGGCtgatatctattattatacacCAAAGGGTAAAAAAGTCAGGAGTTTTAGAGAGGTTGCAGAATGTCTTAGTTCAAAGGAATTGACCATTGACAACTTTACATTCTTCAAAGAACCTATTGGGCTTAATGATCCTGAAAAGGAGATTGTTCGACACGCTAAAAGAATAGGAAGCTCAGGAGGATCTACGATGGGAAGAAAATCTTTTGGTAATAAGAAAGCCTCACCAACGAAAAAGCCAGTACAAGAACCTGCAGTAAAAAAAACAGTACAGGAACCTACAACAAGAAAGTCATTACAGGAAACTGCAACAAGGAAGTCAGTACAGGAGTCTCCTGCCCCTGTTCCTGCACCTGTTGCAGAAGTTTCAAAACCCGTTCCTGCACCTGTTCCAGTGTCTACAAAAGCTACCCCCAAATCAACAAAAGCATCAGCCTCTCCGGCATATAAGACAAAAGCAACTGCAAAGAAAACTCCTCAAATAAAAATGAAACCATCAGTTGAAGAAAGTGAGATGCTTCCACCTCAACGAAGTATTGCAAATACAAGACGAAGTCAGCAAGTAGCCGAGAAGGTTACTTCTGTTAAAACTAAAAGATTGCTAACGCCCAAAGTTCAAGAGCCATGCAGCATAAGATGTTCGACAAGTATGGGATTAATACCAAGCTTACAATGTCGAGTCTGTCTCTGTTTATATCATCCTGAATGTGTCGATGGCATGGAATTTGCAGGCAGTGACGAATATGTCTGTAAGAATTGTCAGCCGGATACTAAAGAATCTCATACACCAAACAATCCATCTTTGACACCACCTCCATTGATTCCAATTAGTATGTTGGGTGCACAAAATGCAAAATCGAAACATCAAACTAATTCATCTCCTCCGAAATTGCAAAGAATTCCGAAATCTGACAATACGGACGCGCAAACgagaaatttttcgaaaattaccAAAATACCGTCTGCAAACTCGTCACCATCAAACATAGACAAAAAGGAAGGCACTTGGTTCCCTCAAACGGAAAATGAATTTTTGCAAAGTTACGATGGTACTATGCCGAAACCGGCTCAAAATATCGCTTTAATGGGTGGTAAAAGATATATTGTAGTACCGAAAAATAATGCAATGGCAGTTCAACCAGCTATAACAGTGAGACCGGATAAGATTGGCGATAAACCGCCAATGCTTCAAGATGGTTCACTTACTGATATTTCGAATACTGTGGACAATTCTGCTACAAAATTACGTGCACCTCCACCTAAACACTTAGATATCGATCTAccggaaaaaataaatgttacatctgataaagaaatttcaaaagatatgGCACATCTGATAGATCCTGCATCTTCAGTTACCACTGAAATAACTGAGgaattagataataaaaataataaggaTAGTAAAGATATTCCTAAAAGAGATAAGTCAgttgagaaaatatttgaaaataaatctccCACTGCTGACACAGATTATGTGCCTGACAAGAAAAAAGCAGATATAGATCGTAAATTGTCTGAAAATAAACCTGCATGTACACCAGTACATACAACAGATACTGCAGACGCTCTTGAAACAAACGCTGAACCAATTAAAGCAGCTCGTCGACAATCGTTATCAAGTAAAGCGGGTAcagtaacaaaaattaaaaatagcaaGAGGAAGCAAAATCAGGACATGGAACAGCAGCAAAATTTCATGAGTTCAGTTTGTGCCGGCTATCACGCTCTGCTTCGTATTTTCCAATATCTTAAAGTGCAAGAACTACTGCGGGCCGGGCGAGTTTGCAAGATGTGGCATGATCTAGCGGCTCATCCATCTCTATGGAAGACAGTACGTATGAAGAATAGCCAGGTGACTGATTGGGACGGTCTGGCGGAAACATTACAGAGACGCGGTACGCAACACCTAGATCTTAGAAAAATGTTAGTCTCTGGCGAATCTGATAACATTTGGAGGAAGTTTTTGACTATTGTACCGCGAGTGACCAGTCTCGTCAAGCTTGAGTTATGCAGATGTCCCGTCATGGTGGTCGAAGAAGTTATTAAGAGTTGTCCTCAGTTGGAGGTACTGAGTGCAATGTCGATTAAGTGTGATTCTCTCAACTTGGAATCGATTGGAAACCTAGGTCGATGCCAAGAACTCAGACTCAAAGCAATAAGTGGAATGTCATTGCAACAAGATCTTACATCTCTACAAAACTTGATACACTTGACGCAACTGAGTTTGACATCAGTTAAAGAACTTGGAAAGAAGAAAATTGATGTTATACAGGTATTAATAAATCTGGAAACGTTAGAATTGGGCGAATGTTCTGACTTTCCCGACAAGTTTGGAActaatgttttaattaaattaaataaattggaACGTCTTAGACTTGAAAAGGGTCAAGGATCCTGTTGTACATTTGATATCCTTGAAGGCGTATCAAAATTGGAAAATCTCTGTCAGATGGAGTTGGTTAATTTTGATGTGAAAAATGGATTTGACAAATGTCTTGCTAATTGCAAGAATATCAAGAGGTTACTAATTATACCAACTTACATATCTCAATCAGCAACATCTAATAACATGGTGCTCGGAGGTGTCACGGAATTGTCAAACAATTTGACACATTTCATATGGGGTGTTACCCTTGAATTACTCAGGGTTACAGAACTGTTTGTTGATCAGTGCAATCTTATGAGTAAACAAGTTACTGGAGATTCTATACCAGTTTTAAAACCTGTCCCCTGCTTACGATTGATTGCGGATGTCGAAGACGAAAACGAGAATCAAAAAGGAGACGACAAGCAACAGCCGCAACTGGCGAGTCCGCAAGTCGATATTTTACCATTGCCACAACTACAGAAGCTTCTCTTAACCGCGTTGCCCAAGACACGAgttaaaatcttgaaaattCCCTTCCACGCCACATGGCGGCAAAGCATTTTAGATACCGCGGCGCAATAG
Protein Sequence: MDGANVNGGNAEVSREDSNLESGDGGDTTVPMEESPPSSKAVAGDADSNAQEVNGDLKGSPKKHGSPFPRRKMKKLKANSTSTIESDATEPLGTRGRKRKFSELEDVSSEDSEFNGFDSKGLELQPGSHVLKKLIAEAEMAEVQLVKRVRYSRRSFDIRGKREDDQDSDDMKTYIYETDSMEHLSIGKIKKEKESDKSETDSIDIPNSIDSEVEPNKIEITSIRSANSSSAASSPSAISQKSKSSRVSRGASPGGRQKAPVDMSNPLYKEPFKYGWKRELVFRASNDSSFKRMADIYYYTPKGKKVRSFREVAECLSSKELTIDNFTFFKEPIGLNDPEKEIVRHAKRIGSSGGSTMGRKSFGNKKASPTKKPVQEPAVKKTVQEPTTRKSLQETATRKSVQESPAPVPAPVAEVSKPVPAPVPVSTKATPKSTKASASPAYKTKATAKKTPQIKMKPSVEESEMLPPQRSIANTRRSQQVAEKVTSVKTKRLLTPKVQEPCSIRCSTSMGLIPSLQCRVCLCLYHPECVDGMEFAGSDEYVCKNCQPDTKESHTPNNPSLTPPPLIPISMLGAQNAKSKHQTNSSPPKLQRIPKSDNTDAQTRNFSKITKIPSANSSPSNIDKKEGTWFPQTENEFLQSYDGTMPKPAQNIALMGGKRYIVVPKNNAMAVQPAITVRPDKIGDKPPMLQDGSLTDISNTVDNSATKLRAPPPKHLDIDLPEKINVTSDKEISKDMAHLIDPASSVTTEITEELDNKNNKDSKDIPKRDKSVEKIFENKSPTADTDYVPDKKKADIDRKLSENKPACTPVHTTDTADALETNAEPIKAARRQSLSSKAGTVTKIKNSKRKQNQDMEQQQNFMSSVCAGYHALLRIFQYLKVQELLRAGRVCKMWHDLAAHPSLWKTVRMKNSQVTDWDGLAETLQRRGTQHLDLRKMLVSGESDNIWRKFLTIVPRVTSLVKLELCRCPVMVVEEVIKSCPQLEVLSAMSIKCDSLNLESIGNLGRCQELRLKAISGMSLQQDLTSLQNLIHLTQLSLTSVKELGKKKIDVIQVLINLETLELGECSDFPDKFGTNVLIKLNKLERLRLEKGQGSCCTFDILEGVSKLENLCQMELVNFDVKNGFDKCLANCKNIKRLLIIPTYISQSATSNNMVLGGVTELSNNLTHFIWGVTLELLRVTELFVDQCNLMSKQVTGDSIPVLKPVPCLRLIADVEDENENQKGDDKQQPQLASPQVDILPLPQLQKLLLTALPKTRVKILKIPFHATWRQSILDTAAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00109830;
90% Identity: iTF_01254796;
80% Identity: -