Fari003489.1
Basic Information
- Insect
- Fopius arisanus
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_000806365.1
- Location
- NW:73967-77472[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.8e-115 3.9e-111 370.3 35.6 1 300 50 346 50 346 0.97 2 3 0.0049 49 2.2 2.5 122 171 346 395 345 400 0.90 3 3 0.036 3.6e+02 -0.6 4.9 195 238 378 420 367 421 0.57
Sequence Information
- Coding Sequence
- ATGTGTGTGTTCTCCacaatttattctctttccACGATTATTATGATAAAACTAGgaGATATAATGGAGTCAACGGTTGCGGGACGGAGGCGTACCGCCACCAGACACTCTGCTGAGGATCAAGCTCTCGATCAAATAGCCAAGGAGGCAGAAGCTAGATTGGCGGCGAGGAGACAGGCAAGAGCAGAGGCTAGAGAAATTCGAATGAGAGAACTCGAGAGACAGCAGAAAGAAGCTGAGGAGAATGCTGATAGGGTCTACGACATGTGCACTTCTGATGGAAGAACCATGAGAGTTACACCAGATCCAATTAGAACATCACGTCTCCTTacgaattcaaataattttcaatcgagtCGGAGGTCATCTGAAGACTCCCTCGAGGATGCTGGTCTCAACAGGGACATAAGATTAGAGCTCAAGGAATTCGAGGAGAAGTTCAGGAAGGCTATGATCGCCAATGCTCAgcttgataatgaaaaatcctcgtACTCTTATCAAGTGGAGTTGTTGAAGGATAAGCTGGAGGAGCTGGAGGAGTCGTCGGCGACTCTGCGACGGGAGCTCAGGGAAAAGAATAGAGAGTCAGAGCAACTTAAACGAGTTAATCAACGATTAAAGGAGGAGCTGGAACTCTGCAGAGCTCAATTATTGGAGAGGGATACACTTATACAGGATAATGGGCTAGTTATAGTTGAGGATGAGGGGAGTGAGAGTGAGGAGACAGGTGGAGTGAATGGAATAGTTAACAGGAAGCGAGTGCTAGTCAGTACAGAGGCTGCTGAATTGCTGCAAAATGCTGGCGAAGGCTCATtagacgTTCGATTGAGGAAGTTTGCCTCGGAGAAAAAGGAATTGCAGGATGAGATAAGGCATTTAAGATTAGACTTGGAGGAGGCAAAGAGCCGAAACAGAACCGAAAGATCATCTGGATCAATATTGGgccTAGCTGACTCGGATGATGTTCAACGAGAAGCTAATAAACTACTCGctgattataaatttaaactGCAGAAGGCCGAGCAGGACATGTCGACGCTGCAAGCAACAGTGGCAAGGCTAGAGAGTCAAGTTATTCGTTATAAATCTGCGGCTGAAGCTTCAGAGAAGGCTGAGGACGAGCTCAAAGTTGAAAAGCGTAAATTACAGCGAGAAGTGAGAGAATCGCAGGGTCGCGTTGAAGAACTCGAGACAGCAAATTCTCACCTTCAGCGACGCCTGGATAAACTGAAAAACGCCAAGTCCGCTCTATTGAAAGAACTCTGA
- Protein Sequence
- MCVFSTIYSLSTIIMIKLGDIMESTVAGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCTSDGRTMRVTPDPIRTSRLLTNSNNFQSSRRSSEDSLEDAGLNRDIRLELKEFEEKFRKAMIANAQLDNEKSSYSYQVELLKDKLEELEESSATLRRELREKNRESEQLKRVNQRLKEELELCRAQLLERDTLIQDNGLVIVEDEGSESEETGGVNGIVNRKRVLVSTEAAELLQNAGEGSLDVRLRKFASEKKELQDEIRHLRLDLEEAKSRNRTERSSGSILGLADSDDVQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRESQGRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_00687172;
- 80% Identity
- -