Fatl077151.1
Basic Information
- Insect
- Flexamia atlantica
- Gene Symbol
- ZEB2
- Assembly
- GCA_035578135.1
- Location
- JAQJVK010000028.1:3353733-3357281[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.024 1.1e+03 2.1 0.1 25 49 210 234 204 238 0.82 2 5 0.059 2.7e+03 0.9 0.0 21 44 234 257 231 260 0.89 3 5 5.6e-05 2.6 10.5 0.0 21 47 292 318 288 323 0.87 4 5 7.1e-05 3.3 10.2 0.1 21 45 362 386 355 392 0.89 5 5 0.0007 33 7.0 0.1 26 46 424 444 410 447 0.85
Sequence Information
- Coding Sequence
- atgtactgTTCACAGGATCCAGAACAGCTAGAAACAGGAGGAGACGATGAAGTAGAGGTATTATATGACAATGAAGATGATTCGACACAGGAACCTAACAAGTTAGTTATTCAGACAGAAGATGAAGTACAAGAGTTAGAGGACGTCGGGAAAGAGAACGCAGAAGGAGGAGCAGACATAGGAGAATTGCAACTACCAGAGGAAATGAAACTGCCAGACGTAGAGGGAGAAGGATTTGAAGAAACTCTAGCAGAAGAATTCCAGCAGACAATGGAGGACTTTGAAGAATATGAAGAAAACGAAGAAGAAAACTATTATGAAAATCAAGAAACAGTGTACGATGAAGAAAACGGATTGGAAGAACAGGAAGATGATGTGACCATCGTTCACGTAGCCAATGACGAAGAATATGATGAAGGAGATGAATTGTATGAAGGATTATGTCATGTATGCGGCTCTGAAAACTGCAAGGGCCACCCTCGAGTATCTAATCCTCGTGAAAACTATTTTGTGTGTTTAGTTTGTAGCGAAATATTCCCCTCACAGAAACAACTGGCAAACCACTCGCTCTCCCATCAGGATATGTCAGAAGAAGAGCTGCTGATTCTCGAAGAAAAACAGAGGAGTCTTACTTGTGAGTTTTGCGGCCGAGTATTATCGACAAAATCAACTCTAAGGGAGCACATTATGATTCACACCGGAGAAAAACCCCACGAGTGTTTGCTCTGCGGTAAAAGTTTCCGGCATAAAGCGAATTTGGTCGTTCATGTAAACGGGCACGCTGTCGTCAGCACTTACAAGTGCAAGAAATGCAATAAAGCGTTCACAAAGAAAAGCGATTTCGAGAAGCATTTGAAATATCACGTGGATGCATCCGGTAACCCGCTAGTCTGCAAGATCTGCAACGCGGTGTTTAAATCTCAAAGAACGCTCTACAACCATTCGCAGCTTCATTCTAAAAAAGGGGTCGTTCGAGCTAAAAAGAGGAACGAAGAACCGAGAGATCCGGTTCACGTCTGTAAAACTTGCGGAAAGGTGCTCTCGACCAAAGCCACATTGAAAGAGCACATGATGATCCACTCCGGGGAGAAGCCGCACGAGTGTCCGATATGCGGGCGGACGATCCGGCACAAGGCCAACTTCGTCGTCCACATCCAGACACACGGGCAGGGGAAATCCTACGAATGTGACATGTGCGATGAAGCGTTCATGAAGAAATTGGATCTGACGCAACACAAGCAAGCGGCCCACTCCAAGTCTAAACTGCTGCGTTGTCCGATCTGCGGCGAGGTGTTCAAATCGCCGGTGAAATTCAATCGCCACATGGAAATTCATGAGAGTGTGGTCTACATGAACGAGACGGAGGAACTGAATGGATTCGAACCGCATCTTCTTGAAGGGCTTCTAGAAGATTAA
- Protein Sequence
- MYCSQDPEQLETGGDDEVEVLYDNEDDSTQEPNKLVIQTEDEVQELEDVGKENAEGGADIGELQLPEEMKLPDVEGEGFEETLAEEFQQTMEDFEEYEENEEENYYENQETVYDEENGLEEQEDDVTIVHVANDEEYDEGDELYEGLCHVCGSENCKGHPRVSNPRENYFVCLVCSEIFPSQKQLANHSLSHQDMSEEELLILEEKQRSLTCEFCGRVLSTKSTLREHIMIHTGEKPHECLLCGKSFRHKANLVVHVNGHAVVSTYKCKKCNKAFTKKSDFEKHLKYHVDASGNPLVCKICNAVFKSQRTLYNHSQLHSKKGVVRAKKRNEEPRDPVHVCKTCGKVLSTKATLKEHMMIHSGEKPHECPICGRTIRHKANFVVHIQTHGQGKSYECDMCDEAFMKKLDLTQHKQAAHSKSKLLRCPICGEVFKSPVKFNRHMEIHESVVYMNETEELNGFEPHLLEGLLED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00727696; iTF_00052158; iTF_00055059;
- 90% Identity
- iTF_00727696;
- 80% Identity
- iTF_00727696;