Amod080314.1
Basic Information
- Insect
- Allygus modestus
- Gene Symbol
- -
- Assembly
- GCA_963675035.1
- Location
- OY776114.1:56777763-56790121[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.12 1.7e+03 1.8 0.0 25 49 296 320 290 324 0.82 2 5 0.29 4.3e+03 0.6 0.0 21 44 320 343 317 346 0.89 3 5 0.00027 4.1 10.2 0.0 21 47 378 404 374 409 0.87 4 5 0.00041 6.1 9.7 0.1 21 44 448 471 445 475 0.89 5 5 0.0035 52 6.7 0.1 26 46 510 530 496 533 0.85
Sequence Information
- Coding Sequence
- ATGTCCTCGAATAAAGCGTACGGAGTGGTCGTAAACACACGGAGTGTATGGTTGGCGACGCCAGCGCCACTAACGGCAAAACGCTCAACTAAGCAGTTGGAACCTCGTATGATTGAAAATACTAGAAAAGAGATGGCTGAAGATGAACAGAGCGCCGTCCTGAACTCCGAACAGTTCACCTCAGAACTGATCATCAAAGAAGAGCCTCTCTCGGACACCGAGCAGGACACAGAGCAGCTGGAGACAGAAGCTGACGATGATATAGAGGTGTTGTATGACAATGAAAATGACTTGACTCAAGAAGCCAATAAGCTAGTGATAGAGACAGAAGAGGATGAAGTTCAAGAGGTGGAAGAAGTGGCAGAAGAGAATGCAGAAAGAGGGAAGGAATCAGAAGTTGAAAATTTAGAAGAAGGGGAAGCAGAAATTGGAGACCTACAACTGCCAGAGGAAATGAACCTGCCAGATGTGGAGAGAGAAGGGTTTGAAGAAACTCTAGCAGAAGAATTTGAGCAGACAATGGAAGAGTTTGAAGAGTATGACCAAGACGAAGATGAAAACTACTACGAAACTCCCGAAACCTTGGATGAAGATTATGAAGAAAATGGTGTGGAAGGACAGGATGACGAAATTACCACTGTTCATGTAGGTAATGAAGAAGAATACGATGAACAAGAAGAGGATATGTATGAAGGATTGTGTTACATCTGCGGCTCTGAAAATTGCAATGGCCACCCCCAGGCTACTAATCCTCGAGAAAACTACTTTGTGTGTTTGGTTTGTAGCGAAATGTTCCCATCTCAGAAACAACTTGCCAACCACTCTCTCTGCCATCAGGATATGTCGGAAGAAGAGCTTCTGATGCTCGAAGAAAGACAGAAGAGTCTCACTTGTGAATTCTGTGGCCGTGTTCTGTCGACAAAATCGACACTACGAGAGCATATCATGATTCATACTGGAGAAAAACCTCATGAGTGTTTGCTGTGTGGTAAAAGTTTCCGACATAAAGCGAATTTGGTCGTTCATGTAAACGGACACGCAGTAGTCAGCACTTACAAATGTAAAAAGTGCAACAAAGCGTTCACAAAGAAGAGCGATTTCGAGAAACATTTGAAATTTCATGTGGACGCATCGGGTAACCCGTTGGTCTGCAAAATCTGCAATGCGGTATTTAAGTCTCAGAGAACACTATACAACCATTCGCAACTTCATTCAAAAAAAGGTGTTGTCAGAGCGAAAAAGAGAAACGAGGTCCCAAAAGATCCGGTTCACGTCTGTAAAACATGCAAAAAGGTGCTCTCGACCAAAGCTACATTAAAAGAACACATGATGATACACTCTGGAGAAAAACCCCACGAGTGTCCAATATGCGGAAGAACCATTAGACACAAGGCGAATTTTGTTGTCCACATTCAAACGCATGGGCAAGGTAGATCTTATGAATGTGACATGTGCGATGAAGCCTTCATGAAAAAGTTGGATCTCACGCAACACAAGCAAGCGGCTCACTCCAAGTCTAAACTGTTGCGCTGTCCGATCTGCGGTGAAGTGTTTAAATCACCCGTGAAATTCAATCGACATATGGAAATACATGAAAGTGTAGTCTACATGAATGAGACTGAAGAACTAAATGTTTTTGAACCGCATCTTCTTGAAGGGTTTTTAGAAGCTTAA
- Protein Sequence
- MSSNKAYGVVVNTRSVWLATPAPLTAKRSTKQLEPRMIENTRKEMAEDEQSAVLNSEQFTSELIIKEEPLSDTEQDTEQLETEADDDIEVLYDNENDLTQEANKLVIETEEDEVQEVEEVAEENAERGKESEVENLEEGEAEIGDLQLPEEMNLPDVEREGFEETLAEEFEQTMEEFEEYDQDEDENYYETPETLDEDYEENGVEGQDDEITTVHVGNEEEYDEQEEDMYEGLCYICGSENCNGHPQATNPRENYFVCLVCSEMFPSQKQLANHSLCHQDMSEEELLMLEERQKSLTCEFCGRVLSTKSTLREHIMIHTGEKPHECLLCGKSFRHKANLVVHVNGHAVVSTYKCKKCNKAFTKKSDFEKHLKFHVDASGNPLVCKICNAVFKSQRTLYNHSQLHSKKGVVRAKKRNEVPKDPVHVCKTCKKVLSTKATLKEHMMIHSGEKPHECPICGRTIRHKANFVVHIQTHGQGRSYECDMCDEAFMKKLDLTQHKQAAHSKSKLLRCPICGEVFKSPVKFNRHMEIHESVVYMNETEELNVFEPHLLEGFLEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00728340;
- 90% Identity
- iTF_00052158;
- 80% Identity
- iTF_00052158;