Fvir007868.1
Basic Information
- Insect
- Ferrisia virgata
- Gene Symbol
- -
- Assembly
- GCA_900060175.1
- Location
- FIZR01026758.1:7899-10028[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.9e-05 0.0017 18.8 4.7 1 23 174 196 174 196 0.99 2 17 0.0028 0.26 12.0 4.7 1 23 201 223 201 223 0.98 3 17 0.0055 0.5 11.1 1.6 2 20 231 249 230 251 0.92 4 17 0.00027 0.024 15.2 0.7 2 23 257 279 256 279 0.95 5 17 0.0027 0.24 12.1 0.2 2 23 298 318 297 318 0.95 6 17 1.5e-05 0.0013 19.2 0.1 1 21 324 344 324 345 0.95 7 17 5.4e-06 0.00049 20.5 3.6 1 23 352 374 352 374 0.98 8 17 0.0072 0.65 10.7 0.4 2 23 385 407 384 407 0.96 9 17 7.9e-05 0.0072 16.9 0.4 1 21 413 433 413 434 0.94 10 17 0.0013 0.12 13.1 0.0 3 23 438 459 436 459 0.95 11 17 0.0001 0.0091 16.6 0.3 1 22 482 503 482 503 0.95 12 17 0.00062 0.056 14.1 0.3 2 23 506 528 505 528 0.95 13 17 0.00013 0.012 16.2 0.9 1 23 555 577 555 577 0.98 14 17 3.6e-06 0.00032 21.1 0.9 1 21 583 603 583 604 0.95 15 17 8.9e-06 0.0008 19.9 0.9 1 23 611 634 611 634 0.96 16 17 0.00061 0.055 14.1 2.4 1 23 639 661 639 661 0.97 17 17 0.031 2.8 8.7 3.3 1 23 667 690 667 690 0.96
Sequence Information
- Coding Sequence
- ATGTCTAATTCGATCCATCGCTTCATCCTCGTAGGtatcctacctacctatgtacctatagttcaactgaaaaataacGACGATTTTCGTACTTATAGGTGCAATACGCGTATTTCAAAGGTgtcgaaaaatgagataaCCTCCGAAGAAAGTTTGAAATGCATCGAACCGCAGCCTAACTCTGTTTCAATTTGCGAGCAAAGTCAGCTAGATGATGTATCGTTGTCAGAGAACAATACGCATACCAGCAAGACTCCCCTCACTGATCCTCGAGTACCACtggaattcgaaaaatttcttcgtttaCACACAAATAACATCAAGTACATGCAATGCGACAAATGCGATTTTATTTGTCGACCTTTAATGACGTTATTCTTGAAGCACTACAAAAAACATGTAGACTGTGTAAACgacaaaatattttccagcTACTACGAAAAATTCGGTGCTGAAATAGCTAATCTGGAATCAGAATCCGTCGATCTTGGCCCATCATTACCTGTCGTcggtaaaaaatatcgatgcGGTAAATGTACGAAAAGTTTCAACAAACGCGAGAGTCTTCATCgacatttgaaaatacatagcAAACGGGTTTATCGTTGCAACGAATGCGAATGCAAATTCAAAACGAAATTAGCTTTCAAGGCGCACAAGGAAAGACACCGACGTCCGAAAGAACTGTTGCATTGTGACCAATGCGACAAATACTTCAGATCCAAAGACGGCTATAAATATCATCGCGAAAATAAATGTATATTAATTAAATGTCGTCTGTGCGATCAAACCTTCGGCCGGACTGTCGATCTGAAAGAGcatatgaaagaaaaacacgATTTAACCATGTCGGATACGGAACAAGAACGTCAGTTGGAGGCGCAGACTAGCATGTGTTTCGTATGTGGTAAAATAGTGAAAGATAGTAACCTCGAACGGCATATGATGGTTCATATGGAAGATAAACCTTTCGTTTGCGATCTGTGCggtaaaagtttcaaatttaaaagtgCTATTAGAGACCATATGATGATCAAGCTCGGAATGAAAGACTACGTTTGCGAAATCTGCGgtagaaaatttgtcaaaaagtGCTACTTAAATAAGCATATTAGATTTCATGGTGACAAAAAAGATGATCAAAAAAGTTTACAGTGTGACATATGTCTTGAAAGGTTCGCCGACAGAAAACTGTACGTTTTGCATAAACGTTCGTCGCACGATCCGGATAAACCATTTTCCTGCGATCTGTGCACCAAGTCGTACGCATCGAAAGCTCAACTACGCCAGCATCTACTTAGAGAAGTCATATGCGTTTTGTGCGATGAAATATTCGCCTCAAATGATCTGCTAAAACAACACGCGATAACGGTTCATACTCTGGATAAATATAGAGAAACGGTGAATGGCGACGAGGACGACACTAGCGTTGCAGCATTTGTGTATCCGTGCGAAATCTGCGGTCGTAAATTTACCTCCGAAGAACGTTACAAACAACACCAGTTGACTGAATTGAACTGTGAACTTTGCAGCAGCCAGTTCATTCAAAAtgatgaactcaaaaaacatatcGAAACCGATCACGATCTGGCAGAGTATCGTAAAGTCATGTCATTGAGATGGAAGAAACAGATCAAATTAGGCGACGCTAAAACAGCCGAATACCCTTGCGAACTTTGCGGTAAAAAGTTATTCTACCGGAGGACTTTGCTACTTCATATGCGAATGCATTCTGGACTGAAACCTTACAAATGCGAGTATTGCAATAAAGCCTATACCAGTAAACATTCGTTGAATGCACATCTCATATCTGAAATGAATCTACGCAAATTTGTATGCTCTTATTGTGGGAaaaggtataattttaattcagatTTGATTGTGCATGTTAAACAACGTCACGAATCTAGGCAATTTAGCTGCCACGTTTGTGGTAAAAAGTTCGGCCTGCTGAAGTATTTAAAAGATCATACGACTATTCATTCGCAAGTCAAGCCATACAATTGCGATAAATGCAAGTTAGGGTTTAGGTTGAGGAAGTTTTTAATCAGGCATAATAAGAAATACCACTCGGTGACATCAACAGAAGATGAACAAGTGTTTTATATCGAAGTAGGCGCCGATGAATGA
- Protein Sequence
- MSNSIHRFILVGILPTYVPIVQLKNNDDFRTYRCNTRISKVSKNEITSEESLKCIEPQPNSVSICEQSQLDDVSLSENNTHTSKTPLTDPRVPLEFEKFLRLHTNNIKYMQCDKCDFICRPLMTLFLKHYKKHVDCVNDKIFSSYYEKFGAEIANLESESVDLGPSLPVVGKKYRCGKCTKSFNKRESLHRHLKIHSKRVYRCNECECKFKTKLAFKAHKERHRRPKELLHCDQCDKYFRSKDGYKYHRENKCILIKCRLCDQTFGRTVDLKEHMKEKHDLTMSDTEQERQLEAQTSMCFVCGKIVKDSNLERHMMVHMEDKPFVCDLCGKSFKFKSAIRDHMMIKLGMKDYVCEICGRKFVKKCYLNKHIRFHGDKKDDQKSLQCDICLERFADRKLYVLHKRSSHDPDKPFSCDLCTKSYASKAQLRQHLLREVICVLCDEIFASNDLLKQHAITVHTLDKYRETVNGDEDDTSVAAFVYPCEICGRKFTSEERYKQHQLTELNCELCSSQFIQNDELKKHIETDHDLAEYRKVMSLRWKKQIKLGDAKTAEYPCELCGKKLFYRRTLLLHMRMHSGLKPYKCEYCNKAYTSKHSLNAHLISEMNLRKFVCSYCGKRYNFNSDLIVHVKQRHESRQFSCHVCGKKFGLLKYLKDHTTIHSQVKPYNCDKCKLGFRLRKFLIRHNKKYHSVTSTEDEQVFYIEVGADE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00194614; iTF_01491282; iTF_01150643; iTF_01262776;
- 90% Identity
- -
- 80% Identity
- -