Plon019281.1
Basic Information
- Insect
- Pseudococcus longispinus
- Gene Symbol
- Sall1
- Assembly
- GCA_900064475.1
- Location
- FIZU01041574.1:514-2427[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 5.1e-05 0.0049 17.6 7.5 1 23 108 130 108 130 0.98 2 17 0.0021 0.2 12.5 3.3 1 23 135 157 135 157 0.97 3 17 0.0036 0.35 11.8 1.3 2 20 165 183 164 185 0.92 4 17 0.0011 0.1 13.5 0.5 2 23 191 213 190 213 0.95 5 17 0.00056 0.053 14.4 0.3 3 23 233 252 232 252 0.96 6 17 3e-05 0.0029 18.4 0.2 1 21 258 278 258 279 0.95 7 17 5.4e-06 0.00051 20.7 3.6 1 23 286 308 286 308 0.98 8 17 0.0022 0.21 12.5 0.5 2 23 318 340 317 340 0.96 9 17 0.00012 0.011 16.5 0.4 1 20 346 365 346 367 0.92 10 17 0.00023 0.022 15.6 0.1 3 23 371 392 369 392 0.92 11 17 0.0001 0.0095 16.7 0.3 1 22 413 434 413 434 0.95 12 17 0.0026 0.25 12.3 0.5 2 23 437 459 436 459 0.93 13 17 5.6e-05 0.0053 17.5 0.8 1 23 486 508 486 508 0.98 14 17 3.5e-06 0.00034 21.3 0.9 1 21 514 534 514 535 0.95 15 17 2.2e-05 0.0021 18.8 0.8 1 23 542 565 542 565 0.95 16 17 0.0018 0.17 12.8 2.2 1 23 570 592 570 592 0.95 17 17 0.033 3.2 8.8 3.5 1 23 598 621 598 621 0.96
Sequence Information
- Coding Sequence
- atgtatgaaaaataccaacaaGATGACTTGCCATTGCCTAAGGCCAATAGTCATATTTCCAAGACTTCTTTAAGTGATCCTCGAATACCACAGGAATTTGAAGGTTTCTTACGTTTGCATACAAATAACATCAAATACATGCAATGCGATAAATGCGATTTCATATGTCGACCTTTGATGACATTATTCTTGAAACATTACCAAACACATGCTGATTGCTTAGAAAACACCATTCTCTCCGATTACATCGAAGATTTGCGCAATGATGTTAACGAGTCTGAATCTGTTGAACCCACTATGCCATCAGTTGTCGGTAAGAGGTTCCAATGTAGCAAATGTACTAAATCTTTCAATCAACGTAAAAGCTTTTGTcgtcatttgaaaatacacGAAAAACGTGTATATCCTTGTAACGAATGCGAATGTAAGTTCAAAACAAAACTGGCTTTTAAAGCGCACAAAGAAAGACATAGACGTCCGAAAGAACTTCTGCACTGCGACCAATGCGACAAAGACTTCAGATCCAAAGATGGCTACAAATATCATCGTGAAAATAGATGTATTTTGATCAAATGTCGTTTATGTGAGCAAACATTCGGCCAAACTGTTGATCTGAAAGAGCATATGAAACTGAGCCACGATATAACCGTGCCTGATACCGAACAAGAACATCAGTTCGAGGCACAGACTGGCATGTGTTTCATATgtggtaaaattgtcaaagacAGTAATCTGGAACGACACATGCGGGTTCACATGGAAGAAAAACCTTTCGTGTGCGATTTATGTGGTAAACGTTTCAAATTTAAGAGTGCTATCAGAGATCACATGATGATCAAACTCGGGATGAAGGATTATGTTTGTGAAATCTGCGGTAGGAAATTTGTCAAGAAGTGTTATCTGAATAAACATATCAGGTTCCATGCTGGCAACAAAGAccagaaaaatttacagtgTGATGTCTGTTCCGAACAGTTCGTAGATAAGAAGCTGTACATTTTGCATAAACGTTCGTCTCACGATCCAGAAAAACCGTTCTTGTGTGATTTATGCAACAAATCGTACACTTCGAAGGCCTCTTTACGTCAGCATCTCGTAAGAGAAGTGATATGTACGTTGTGTGATGAAATATTCACATCCAACGACCTCCTCAAACAACACGTCATCTTGGTTCATACGTTGATGCAATACAGAGAAGCTgtcaataatgaaaatgattcaaatgcAGCCTTCGTATATCCTTGTGAAATCTGCGGCAGAAAGTTCACCTCAGAAGAGCGTTATAAACAACATCAATTAACCGAGTTGAGCTGCGAACTTTGCTATAGCAAATTTACTCAGAATGAAGATCTCAAAATTCACATTGAAAACAAACACGACCCTACTGAACACCGTAAAGTGATGTCTTTGCGATGGaagaaaaacatcaaattgGGTGGCATCAAATCAGCCGAATTTCCTTGCGATATCTGTGGTAAAAAGCTATTCTATAGACGAACGTTGCTGCTTCATATGCGAATGCATTCTGGTTTGAAACCCTACAAATGCGAGTACTGCAATAAGGCATACACTAGTAAGCATTCTTTGAATGCGCATCTCATCtccgaaaaaaatctacgtaAATTTGCATGTTCTTATTGCGGCAAGAgatataatttcaattcagaTTTAATTATTCATGTTAAACAACGTCACGAATCTAGGCAGTTCAGTTGTCACGTGTGTGGCAAGAAGTTTGGTTTGTTGAAGTATTTGAAAGATCATTCGACTATTCATTCTCAGGTTAAACCGTTCAATTGTGAGAAGTGCAAAATGGGCTTTAGATTGAGGAAGTTTTTGATCAgacataataaaaaatatcattctaCGGAGGACGAGCAAGTGTTTTATATCGAGGTGGGCGcagatgaataa
- Protein Sequence
- MYEKYQQDDLPLPKANSHISKTSLSDPRIPQEFEGFLRLHTNNIKYMQCDKCDFICRPLMTLFLKHYQTHADCLENTILSDYIEDLRNDVNESESVEPTMPSVVGKRFQCSKCTKSFNQRKSFCRHLKIHEKRVYPCNECECKFKTKLAFKAHKERHRRPKELLHCDQCDKDFRSKDGYKYHRENRCILIKCRLCEQTFGQTVDLKEHMKLSHDITVPDTEQEHQFEAQTGMCFICGKIVKDSNLERHMRVHMEEKPFVCDLCGKRFKFKSAIRDHMMIKLGMKDYVCEICGRKFVKKCYLNKHIRFHAGNKDQKNLQCDVCSEQFVDKKLYILHKRSSHDPEKPFLCDLCNKSYTSKASLRQHLVREVICTLCDEIFTSNDLLKQHVILVHTLMQYREAVNNENDSNAAFVYPCEICGRKFTSEERYKQHQLTELSCELCYSKFTQNEDLKIHIENKHDPTEHRKVMSLRWKKNIKLGGIKSAEFPCDICGKKLFYRRTLLLHMRMHSGLKPYKCEYCNKAYTSKHSLNAHLISEKNLRKFACSYCGKRYNFNSDLIIHVKQRHESRQFSCHVCGKKFGLLKYLKDHSTIHSQVKPFNCEKCKMGFRLRKFLIRHNKKYHSTEDEQVFYIEVGADE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00725739;
- 90% Identity
- -
- 80% Identity
- -