Pmar001241.1
Basic Information
- Insect
- Paracoccus marginatus
- Gene Symbol
- -
- Assembly
- GCA_900065295.1
- Location
- FIZT01023258.1:5358-7295[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0002 0.016 15.9 7.0 1 23 114 136 114 136 0.98 2 17 0.0083 0.66 10.8 5.2 1 23 141 163 141 163 0.98 3 17 0.0059 0.47 11.2 1.6 2 20 171 189 170 191 0.92 4 17 0.0007 0.055 14.2 1.0 2 23 197 219 196 219 0.97 5 17 0.0029 0.23 12.2 0.2 2 23 238 258 237 258 0.95 6 17 1.5e-05 0.0012 19.4 0.1 1 21 264 284 264 285 0.95 7 17 5.8e-06 0.00047 20.7 3.6 1 23 292 314 292 314 0.98 8 17 0.27 22 6.0 2.9 2 23 325 347 324 347 0.95 9 17 0.00011 0.0089 16.7 1.2 1 21 353 373 353 374 0.94 10 17 0.0019 0.15 12.8 0.0 3 23 378 399 376 399 0.93 11 17 0.00024 0.019 15.6 0.4 1 21 420 440 420 441 0.93 12 17 0.0011 0.088 13.5 0.4 2 23 444 466 443 466 0.93 13 17 0.00011 0.0086 16.7 0.6 1 23 493 515 493 515 0.98 14 17 5.8e-06 0.00047 20.7 1.0 1 20 521 540 521 542 0.96 15 17 9.6e-06 0.00076 20.0 0.9 1 23 549 572 549 572 0.96 16 17 0.0048 0.38 11.5 2.3 1 23 577 599 577 599 0.94 17 17 0.044 3.5 8.5 4.5 1 23 605 628 605 628 0.96
Sequence Information
- Coding Sequence
- ATGCCACCAATAGCCTCTGTTTTCATAGCTGAACAAGACGAAACGTTAGCATCTAAGAACAGCGCATCTACCTCCGAAGCTCATCTTACCGATCCTCGAATCCCGTCGGACTTTGAGAAATTCCTACGCCAGCATACGAACCGCATCAAATACATGCAGTGCGACAAATGCGACTTCATTTGTCGACCTTTCATGACTCTTTTCTTGAAACATTACAAGAATCACGTAGATTCGAttgaaacgtcgatttttgCCAATTACATCAAAGAATTGAACTCTGACTCGGCGAACGAGCCCGATTGCCAAGAGCCTGCTGCGTCGAGCagagttacaaaaaaatttcagtgtggTAAATGTACGAAATCTTTCAACAAACGTAAAAGCTTCTGTCGTCATTTGAAAATACACGAGACACGAGTCTACCGTTGTAACCAATGCGAATGCAAGTTCAAAACGAAACTAGCATTCAGGGCACATAAAGAAAGGCATCGACGGCCGAAGGAACTATTGCACTGCGACCAGTGCGACAAGTACTTCAGATCCAAGGACGGTTACAAATATCATCGCGAAAACAAATGCATCTTGAGTAAATGCCATCTATGCGAGCTAACTTTCGGTCAGGCAGCAGGTCTGAAagaacacttgaaaaaaagccaCGATATAGCCATGTCCGACGCGGAACAAGGACGCCAATTGGAGGCTCAGACTAGTATGTGTTTCGTTTGCGGTAAAATAGTCAAAGACAGTAATCTCGAGCGTCACATGATGGTGCACATAGAAGAAAAGCCCTTCGTATGTGACCTGTGcggtaaaagtttcaaattcaagAGCGCCATTCGAGATCACATGATGGTCAAGTTAGGAATAAAAGATTACGTTTGCGAAATCTGCGGCCGCAAGTTCGTCAAGAAGTGCTACCTCAATAAGCATATCCGGTTCCACGCAGGCGGCAAAGAAGATGCGAAGAATTTGGAATGCGATCTTTGCTGCAAGAAGTTCACCGACAAGAAGGTCTataatttgcataaaaatacgCCCCACCTTCCGGAAAAACCGTTCTCGTGCGATTTATGCGATAAATCGTACGCTACGAAAGCCTGCTTGCGCCAGCATCTCCTCAGGGAAGTCATATGTGTCCTGTGCGATGAAATATTCGCCTCTAACGATCTGCTCAAGCAACACGTTACCTCGGTTCATACTTTGGATCAATACAGAGAAGCTGTCAACAACGAAGACGATGCCAGCGCAGCGTTCGTATACCCTTGCGAAATCTGCGGTCGTAAGTTCACCTCCGAAGACCGCTATAAACAACATAAATTAACCGAATTGAACTGCGATCTTTGTAGTAGTCAATTTACCCAAAATGAAGATCTCAAAAAGCATATCGAAAACGAGCACGACCCGACGGAATATCGCAAAGTGATGTCTCTTAGATGGAAAAAGCAAATCAAACTAGGCGGCGCCAAGGCAGCTGAATACCCTTGTGATCTATGCGGTAAGAAGTTATTCTACAGGCGAACTTTGGCTCTCCATATGCGCATGCATTCCGGTCTGAAACCGTACAAGTGCGAATACTGTAATAAAGCTTATACCAGTAAGCATTCGTTGAATGCACATCTCGTCTCTGAAATGAATCTACGGAAGTTCGTGTGCTCTTATTGTGGCAAAAGGTATAATTTCAATTCCGATCTGATTGTTCATGTTAAACAACGCCACGAGTCTAGGCAGTTCAGCTGTCACGTTTGTGGCAAAAAGTTTGGCTTGATGAAGTACCTGAAGGATCATTCGACCATTCATTCACAAATCAAACCGTTCAATTGTGATAAATGCAAGTTAAGATTTAGACTGAGGAAGTTTTTAATCAGGCATAATAAAAAGTATCATTCCGGTAACGAAGATGAACATGTGTTCTATATCGAGGTAGGCACTGACGAATGA
- Protein Sequence
- MPPIASVFIAEQDETLASKNSASTSEAHLTDPRIPSDFEKFLRQHTNRIKYMQCDKCDFICRPFMTLFLKHYKNHVDSIETSIFANYIKELNSDSANEPDCQEPAASSRVTKKFQCGKCTKSFNKRKSFCRHLKIHETRVYRCNQCECKFKTKLAFRAHKERHRRPKELLHCDQCDKYFRSKDGYKYHRENKCILSKCHLCELTFGQAAGLKEHLKKSHDIAMSDAEQGRQLEAQTSMCFVCGKIVKDSNLERHMMVHIEEKPFVCDLCGKSFKFKSAIRDHMMVKLGIKDYVCEICGRKFVKKCYLNKHIRFHAGGKEDAKNLECDLCCKKFTDKKVYNLHKNTPHLPEKPFSCDLCDKSYATKACLRQHLLREVICVLCDEIFASNDLLKQHVTSVHTLDQYREAVNNEDDASAAFVYPCEICGRKFTSEDRYKQHKLTELNCDLCSSQFTQNEDLKKHIENEHDPTEYRKVMSLRWKKQIKLGGAKAAEYPCDLCGKKLFYRRTLALHMRMHSGLKPYKCEYCNKAYTSKHSLNAHLVSEMNLRKFVCSYCGKRYNFNSDLIVHVKQRHESRQFSCHVCGKKFGLMKYLKDHSTIHSQIKPFNCDKCKLRFRLRKFLIRHNKKYHSGNEDEHVFYIEVGTDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00725739;
- 90% Identity
- -
- 80% Identity
- -