Basic Information

Gene Symbol
ARID5B
Assembly
GCA_958510785.1
Location
OY294025.1:11548446-11557054[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 2.1e-23 5.3e-20 71.9 0.0 2 89 231 316 230 316 0.95
2 3 1.5 3.7e+03 -1.3 0.8 32 84 980 1033 965 1038 0.64
3 3 9 2.3e+04 -8.3 6.7 60 60 1045 1045 994 1084 0.56

Sequence Information

Coding Sequence
ATGAAAACCCAGgacgaAGTTTTAACAATCTCGGAAAAAGTGGTGGTGCGCGTCCACGATCTGGTGACGTGGTTGGCCCCTTCGGTCGAGTGGTCCTGGGGCCGGCAAATCTCGATACCACAGTCGCCGAAGCCATCGGCGGAGAACAACAGCCCTCAGAAGTACGATGCCCCGTATCCGCAGGTACTCACGGAGCCGGGAATCGATTTCTCGGATGTTGACAAACAGGAAAAGGAATTCGAGAGCAATCtcacgacgacgaagaagcaGGATGGCTTCTCGTCACAACCGAGGGTGGTCGTCCTGTCGTATCCGAGGTACTGTCGTTATCGGGCCCTGCTTCGGAGACTCGAAGGCGCTGAGCCATCGTGGCTGTGCTCTTCGGTCGCCGCGGCACTCGGAGGATTCACCGCACTTCCGGGAACTAGAGTTCTCTTCTGCAGGGACACATTCGACTATCCGGATCTTGAGACTCACGAGCTTCTGTGCAATCACCTAGcaCCAAAGCTCAAGGGAAGGCCACGAAGAAAGCGGAAAAAACGCAGCGTTTCTCCCGGCGAGTCGAGCAACGAGAGCGAGGCTTCGGTGGCTTCGACGTCGAGAGGCGCGTCCTCGAACTCGAGCCTCGTGCCTGCCCTTAGACCACCGTCCTCCGGGGTTCGTCGCAGCGAGAGAAACACGAGCGCCGAGGAGAAGAGGTTCCTCACGGATGTCCACGGTTTCATGAGCTCGCGGGGTACGCCCGTCGGAAAAATGCCATTGCTGGGCTACAGACAGATCGATCTCTTTCTATTTTATACAAAAGTCCAGAAGTTCGGTGGTTACGATACCGTGAGCGCCGGACGTCTCTGGAAAACGGTTTACGACGACATCGGTGGAAACACGGGATCCACGAGTGCAGCCACGATAACCCGAAGACACTACGAGAGGTTGTTGTTGCCCTACGAGAGGCATCAAAGAGGCGAGGAGACCAAGGTTAGGCCTACTCACGGAAGGCGAACGAAATCGAGCAGTCTGTCCGACGATTCGATCGAGTTCAAGTCGGAAGTCGGAAGGACATGCACGTCGGAGACACCACCACCGATGGAAGCGCCGACGGCCGCTTCACCGGTTCCACCAATCCCGTCAATCTTATCCTCATCGccgTTCCTACCTGGCGACAAGCCAAAGACTGAGGGCGGCAAGACATCGTCCCTGCGTAGCGTTAGAGTTAAGCCCGAGCGTCTAAAATCCTTGAACACGATAATAGCTAACAGTACACCGGTCGTTAATCAGAATAGTCAATTGCCAAGTCCGAGTCCGCCACCGTCGTCGAACACGTCGAATTCGTCGACGACCTCGAGCACGCCGAGCACGACGCCgtcgacgacgccgacgagCGGCGGTGCCGTTAGTCAGAGTGTCCTCGAGCTCCAGCTCAACAGTCCGTTGATATCCCAGCAAGTGCCAGCGTCGGTGTCGCCGACGGTACTCCCGGTCACGGAGGTGACGACCAACGCGTCGACAGTCGTGACGTTGACACCGCCACCTGAGAAGGACATTAAGGAGATTAAGCTCGATCCCAAACCGACGACACTCTTGGCCCAGGGAAAAGAGAACATACCGCTCTTCGGCGAAAAGCCCATGTTCGCCGAGAAAGCTCTCGTACCGCCAAAGTCACCGGAAGTGATAGATCTCGAGATGGAGAACGACACGAGCCGCGACAAGATCGTCATACCGAGCTTCAAGAAGAGAAAATTGGAGATACTGCGCGAGGGCGGTCTGGAGGTGACGGCTGTCGAGTTGGACGCGAGACCGAGCGTCATTCAAGCTACGATCATCCCCGTCCCCGCCGAATCGCCCTTGTCGGCGAAGAGCGAGGAGAAGAGCGGCAGTCAACAGCCGATCTCGGCCTCTCCGGCTCCGAGCTCCGTGCCCAAACTGATCTCTGTCACCGTCACGCCGGACATCGGACACATGCTGCCGTCGCCGCACGAACAGCAATCGCTGAGCAACTCCCATCACCCCCAGCAACAAGCGAGACATCAAACGCCGACCAAGCAGTCGTCCAATCATCACAATCATCGGGCATCGCCGATCaatcaaacaaacaacaacaacagcgcCGTCGcgaacaacaacagcagcagcggcaacgCGGTGAACAGTCGCGTGATAAACGTCGGAAGTCCGAACAACGCGAGTCTCTTGCAGCTCTACGCGAACGCTTCGAACTCGATACCGCCGACGTCGTCGCCCTCGCCACCGGGCAATCATCGTTTCGTACCGCCGACACCGCCCAACGAGAGGATATCCGCCCCGCCGAAGGTCACGCAGTCGCGCTCCATTTTCGCCCACAGCGAGAAAATGGTCTACGGCAATCCCAAAGATATTCTGATACCCCAGAagtatcatcatcatcatcctcACGTCCAGCAGGCCCAGCATCTCTCATCGCCGCAGAACATGAGCAACAACCTCTCCGCCGGTGGTATTTTGGATCTGACGCAGAAGCAATCGGAGCGCTCTTTCGCGAGGCCGAATCTCGAGATCGTCCGAGTGCCCGTTGTGCCGAGGCCGAATCCGTTGAATCTGGAGATGAAGAGTGTCGCGACGAAGGAGAAACCCGTCGAGGCGCCGTCGAGAAAAGCGCCCTTTCCCGGCTATCCCGGTATGCTCGACAGCAGAACGATGGCCTCGAACAACCTCGAGATAACGCTCGTGAATCCCAAACATCGAGGGATTCCCGGCACTCCGCCGCAGGTCCATCAACCCTCGCCGAGCCCGCCCGCTGCGAGACTTCACAACAACAGCGGCGCTCCCAGCGTCAACAACGCGATCTCGAGTCAGCCGACGCAGAGGCGTCATCAGAACGGCAAGTATCCGTCGAGATCGGAGCCGGTCTCGCCCTACGCGTCGAGAAAGCCTAGTCATCCGCCGGTTATTCCGAACGTGCCGAATCTTCATCACCTCAACAGCGCCGCTTACTCGTCGAGAACGGGCGCAatgcagcaacagcagcaacaacatcAGCAGCAACAGTTGCATCAACAGCAGCACATGTACGTCGACAAGAGAAAAGCTTCGAACAACTCGCTTCAGAATCATCATCACAGGAGAATaagcgagagcgaaaaatcgtcgatgatTGCtcatcaacaacaacaacaacaacagcaacaacaacaacaacaacaacaacaacagcagcagcagcagcaacagcagcagcagcaacagcagcaacagcagcaacaccAAATGCAACAGCACAAAGTCAACGCCGCCCAGAGACAAGCGGACTCCTCACGAAGGCACAGCGTGCCGACGAGCATACCGTCGGGTTTCATACCCAATATTCCACAGAATTCACCAGCCTTCCTCTCGCAAATGCCAAACACGGCAAGCAAGTTTCTACCGATGCTCGATCCACTTTACTACTCGGCCTTCTACAACGGCCTCTTTCCCGCGCCGATACCGACCGGCGCCGCGCCGTACATACCGCCCGAGTTCAGCGCTTACTACAAGGAACTACTGGCCTCGTCCCAACCGAGACTCGCCATCGCCGGACAGCATCAACCCGCTGTACCGACGTCGAAGTAG
Protein Sequence
MKTQDEVLTISEKVVVRVHDLVTWLAPSVEWSWGRQISIPQSPKPSAENNSPQKYDAPYPQVLTEPGIDFSDVDKQEKEFESNLTTTKKQDGFSSQPRVVVLSYPRYCRYRALLRRLEGAEPSWLCSSVAAALGGFTALPGTRVLFCRDTFDYPDLETHELLCNHLAPKLKGRPRRKRKKRSVSPGESSNESEASVASTSRGASSNSSLVPALRPPSSGVRRSERNTSAEEKRFLTDVHGFMSSRGTPVGKMPLLGYRQIDLFLFYTKVQKFGGYDTVSAGRLWKTVYDDIGGNTGSTSAATITRRHYERLLLPYERHQRGEETKVRPTHGRRTKSSSLSDDSIEFKSEVGRTCTSETPPPMEAPTAASPVPPIPSILSSSPFLPGDKPKTEGGKTSSLRSVRVKPERLKSLNTIIANSTPVVNQNSQLPSPSPPPSSNTSNSSTTSSTPSTTPSTTPTSGGAVSQSVLELQLNSPLISQQVPASVSPTVLPVTEVTTNASTVVTLTPPPEKDIKEIKLDPKPTTLLAQGKENIPLFGEKPMFAEKALVPPKSPEVIDLEMENDTSRDKIVIPSFKKRKLEILREGGLEVTAVELDARPSVIQATIIPVPAESPLSAKSEEKSGSQQPISASPAPSSVPKLISVTVTPDIGHMLPSPHEQQSLSNSHHPQQQARHQTPTKQSSNHHNHRASPINQTNNNNSAVANNNSSSGNAVNSRVINVGSPNNASLLQLYANASNSIPPTSSPSPPGNHRFVPPTPPNERISAPPKVTQSRSIFAHSEKMVYGNPKDILIPQKYHHHHPHVQQAQHLSSPQNMSNNLSAGGILDLTQKQSERSFARPNLEIVRVPVVPRPNPLNLEMKSVATKEKPVEAPSRKAPFPGYPGMLDSRTMASNNLEITLVNPKHRGIPGTPPQVHQPSPSPPAARLHNNSGAPSVNNAISSQPTQRRHQNGKYPSRSEPVSPYASRKPSHPPVIPNVPNLHHLNSAAYSSRTGAMQQQQQQHQQQQLHQQQHMYVDKRKASNNSLQNHHHRRISESEKSSMIAHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQMQQHKVNAAQRQADSSRRHSVPTSIPSGFIPNIPQNSPAFLSQMPNTASKFLPMLDPLYYSAFYNGLFPAPIPTGAAPYIPPEFSAYYKELLASSQPRLAIAGQHQPAVPTSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00652463;
90% Identity
iTF_00905201;
80% Identity
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