Eruf037424.1
Basic Information
- Insect
- Eutolmus rufibarbis
- Gene Symbol
- -
- Assembly
- GCA_963920795.1
- Location
- OY987209.1:29643802-29645546[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.064 5.2e+02 2.0 0.0 26 46 64 84 60 91 0.88 2 8 0.026 2.1e+02 3.3 0.0 24 43 215 234 212 239 0.90 3 8 0.00017 1.4 10.2 0.1 21 47 240 266 235 271 0.88 4 8 2.3 1.9e+04 -3.0 0.0 26 32 300 306 294 323 0.59 5 8 0.66 5.4e+03 -1.2 0.0 21 30 353 362 348 375 0.83 6 8 0.00028 2.2 9.6 0.1 21 45 409 433 392 446 0.86 7 8 0.016 1.3e+02 3.9 0.1 18 44 462 488 448 493 0.83 8 8 0.0065 53 5.2 0.1 21 45 493 517 490 524 0.90
Sequence Information
- Coding Sequence
- ATGGCAAATGATCGTTTGAGTGCTGGCGGTGAACTTccgctttttaatttaaaatttacgagtCCACATCTTGATGTTTCCGTTGTTGAAACAGAATTGGGGCTCACCCAGGCACTATCCAGCCCTTGGAACACACATTTGCACCccaacgaaaataaatatttgccgGGAAAACCGCCTTACAGAAATATTTGCACTATTTGTGGCGATTCTTTTGAAGGTTCACTTGCGCTAAAGAAACACCTCGAAACGCACAACAATGGAGCTCCCTTTGAATGTCCATACTGCGCCAATCTCTTCGATACTTTGAAAGAGTTTTCAGaCCACGTTGTGATACACACTCCTAAGTTGAAACTGTTAGCAGGGCTAGAGACGCAACGGAATCTGCAGAAATCTGCGGAAAATCAACCTCTTGAACAACCAGATGATCCAGAACCAGAGCAATTAGAAGAACAATGCTGTGATACCccagaccatgtagaatcacCTAAAACGCCTGCTCAAGAAACTAAACTGGGACCCCTCCCTTGGCAAACAAAAGACAACAAATTCCGTCCatataattgcataaaatgCAACAGATCCTTTACTTTAGCCAGCAGTTTAGCGCTCCACAACAAGAGAAAGCATCTGCTCATAAAGCCCTTCGAGTGCAGCATTTGTAGCTCTGCTTTTGTTCAATCTAGCGATCTTTATAAGCACAAAATGACGCATACTGGAGAAAAGCCCTACCACTGCGAAGATTGTGGTGCACGTTTCAGCCAAAAGCGCAATTTAAGGAACCATCAAACCCTGCATTCTAACAACAAGCATAAATGCAGCTACTGTGGTCTAGGATTTCAGAATGAAAAAAGTCTTGTCCAGCACGTGAAATCTCATGAAGGCGAAGGGTCCCATAGTTGCGCAATTTGCTCAATTCCTTACGTTAACCAAAAAGACTTAGATTTGCATGTTAGACGAGCCCACGAAGTTGCTCCGAACGATTTAGTCTGCCTAGTTTgcgataaaacttttaattctcGCTCAGAGTTAACTCAGCACAGTATAAAACACACAGGGGAAAAGCCCTATACTTGTGATACCTGTGGAAAATCCTTCGCCCATCGAACGAGTCTTATAAACCATAGAGTGGTCCACACtggaaaaaaatcctaccaGTGCACCTACTGTGGCCAGGCGTTTGGATTCTCTGGGAATCTTAAAGCTCATACGCGAATCCACACCGGTGAGAGGCCTTTTGAATGCGAGATTTGCCAGAAAACGTTCGCACGATCGGCAAATTTAAAGGAGCATCTTAAAACGCACACGGGAGAGAGACCAATTAGTTGCGATTTCTGTGGGAAGGCCTTCACAAGCACATCGGGGTATGCAAAGCACAAGAAAATCCACACCGGGGAGCGGCCTCATAAGTGTAATATTTGCAACAAAACTTTTGTGCAGATGGTCCACTTGAATAAGCACATTCTGACGCACACTGGAGAGAAGCCCCACCAATGTGAGGTGTGCCATAAATTCTATAGGAGAAAGGACACCCTAGCGAAGCATTTACAGTCGCATGAAGTCAAGGAATCTGTAAGCAATGAAGAACAGGACGTGGTTCACGCGATTAGGATTGAATTTAGTGATCTGCACCAATGA
- Protein Sequence
- MANDRLSAGGELPLFNLKFTSPHLDVSVVETELGLTQALSSPWNTHLHPNENKYLPGKPPYRNICTICGDSFEGSLALKKHLETHNNGAPFECPYCANLFDTLKEFSDHVVIHTPKLKLLAGLETQRNLQKSAENQPLEQPDDPEPEQLEEQCCDTPDHVESPKTPAQETKLGPLPWQTKDNKFRPYNCIKCNRSFTLASSLALHNKRKHLLIKPFECSICSSAFVQSSDLYKHKMTHTGEKPYHCEDCGARFSQKRNLRNHQTLHSNNKHKCSYCGLGFQNEKSLVQHVKSHEGEGSHSCAICSIPYVNQKDLDLHVRRAHEVAPNDLVCLVCDKTFNSRSELTQHSIKHTGEKPYTCDTCGKSFAHRTSLINHRVVHTGKKSYQCTYCGQAFGFSGNLKAHTRIHTGERPFECEICQKTFARSANLKEHLKTHTGERPISCDFCGKAFTSTSGYAKHKKIHTGERPHKCNICNKTFVQMVHLNKHILTHTGEKPHQCEVCHKFYRRKDTLAKHLQSHEVKESVSNEEQDVVHAIRIEFSDLHQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01183981;
- 90% Identity
- iTF_00717962;
- 80% Identity
- iTF_00717962;