Eruf011935.1
Basic Information
- Insect
- Eutolmus rufibarbis
- Gene Symbol
- -
- Assembly
- GCA_963920795.1
- Location
- OY987205.1:37712542-37718205[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.58 95 4.9 0.7 2 22 241 261 240 263 0.89 2 19 0.0011 0.19 13.4 3.4 2 19 306 323 305 326 0.94 3 19 0.012 2 10.2 1.8 3 23 339 359 338 359 0.89 4 19 0.021 3.5 9.4 0.2 3 23 368 389 367 389 0.94 5 19 0.0073 1.2 10.9 0.9 1 23 395 417 395 417 0.92 6 19 0.00025 0.041 15.5 1.6 1 23 423 446 423 446 0.97 7 19 0.00037 0.062 14.9 2.9 1 23 452 474 452 474 0.99 8 19 6.2 1e+03 1.6 0.1 3 23 485 505 483 505 0.79 9 19 0.0008 0.13 13.9 0.3 1 23 521 543 521 543 0.96 10 19 0.076 12 7.7 1.4 1 23 548 570 548 570 0.95 11 19 0.0024 0.4 12.4 0.5 1 23 586 610 586 610 0.97 12 19 0.0002 0.032 15.8 0.6 2 23 615 637 614 637 0.96 13 19 0.0046 0.75 11.5 0.3 1 23 642 665 642 665 0.96 14 19 0.0026 0.42 12.3 0.6 1 23 670 693 670 693 0.96 15 19 0.0026 0.42 12.3 0.1 2 23 697 719 696 719 0.96 16 19 0.048 7.9 8.3 3.1 1 23 725 748 725 748 0.94 17 19 0.0019 0.31 12.7 0.2 1 23 754 776 754 776 0.98 18 19 2e-06 0.00032 22.1 1.4 1 23 782 804 782 804 0.99 19 19 0.00081 0.13 13.9 0.1 1 23 810 835 810 835 0.97
Sequence Information
- Coding Sequence
- ATGACTAGCAAACAAGAATCAATTACCAAGTCAATGGACTTGCCGAAGTGCGTCAGATGCTTTTGCGATCTGTTTGATGATTTTCAACTGATTTTCGATGACACCGGCCTCGAGCTCGAGCTCCAAAAATTGCTATCCGTTTGTTTTGATATGGACATTAAAGTTCGACTGGGCGAAATTCAAGCGCTTTGTGAAGATTGCCTAAATGAGCTAATTGATACTTATGATATAATTCAGAAGAATGAGCAGGAAGGAGCGGGGCCTTCGGGAAATCAAATTCCTagtacgaaaattaaaaaggaaaatgactCCCCTGAGCAGAGTTCCGGATctgatgatgatgaaaatttttctgatgAGGAGGAAAAGCGAGACATTAAGGAGAAAAAAGACATAAAATCTAAAGAATCTATGTTAAAAGATAAACATGCTCTCAAACATAAAACCGTTAACCAGGATACccgaatttctaaaattttggagTTCGTGGAGGatgaaaattctttagaagaaattaaaaaaccaaacgaGAGCTATGATGTTAATGAATTGGATGATGAAACTTCCAATTTGGAAGTCAAGGTAAAAGACAATGATGACTGTGAAGAATTTAACCAAGTTGATTATTTGGATGATTTTGACGAGGAAATTGATTTCAATGAATACAAAGGTCGGATTATTCAGAGCAAATTCTCTGATGTTTGCTTCCCTGAGGAGATTAAATGTCGTCTGTGTAAGACTGGCGTGAAGACCCACGTGGATTTGATGAGCCACACTGTGGAAATGCACTGCGTCGAAGAATTTGCATATCCTTGCATAGTCGACGTGGAATGTGAATCGATGAGCTCTCAGGAGCACTTAACACTTCACTTGGTATTCAAACACTATGATTTGGATTCATTGGCGATCTACTCCAAATGCCCAGAATGTGAAAAGCGTTTCAGCGACTTTTCCTCTTTCAACAAACACAGCTGTTATCAACCGCCGGGAAAACTATCTAGAACCAAAGTGGACTGTGATGAATGCGGAAAagtgtttaaaacaaataaaagGTACCGCTTTCATCTCCAATTTCATCTTGAGAAGCGTCGTCCAAAGGCTTGTTTCATTTGCGAGAAGTTATTTAGGGATGAAGATGATTTTTTTGAGCATGTGATGTACAACCATGACAAAAATCTGGATTTTGTGTGTATaagGTGTGATCGTTATTATACATctgctgaaaattttaaaaaccaccaAGAAAGCCATAAAAATGAGCGGAAGTATGCCTGCAAATTGTGCCCTAAAACTTATATATACAAGCATTTTTTGTCCGATCACATGatAACCGATCATGATGCAAAAAGTGATTTCAAGTGCCACATTTGTGGCAAGTACTGGATTAATaagacttatttaaaaaatcatttattaacGCACAATAAACCCAAACCAACTGAAGTTATTTGTTGCAATGAGTGCGGATTTGTGGCTGTGGACGAAGCTGAAGCTGAGGGTCACTTAGAAGAGCATGAAGACAAGGAAGTTCATACTGTTACTGAAATTCTAGATCGAGTGTATATCTGCGAATATTGCGAAATGCCGTACAGCTCtcctaattatttaaaagagcaTAGAACactccataaaaataaaaaatttatctgcaCTGTTTGTTCCACTATTTTTTCCGAGTACAAACTATTTAAGTTACATAAATCATTGCATCCGGTGTACGTAAAcagaagaaaaacatttgCTGTGGCGCACTATTTTGTCTGTGATAATTCGggATGCTCCAAGAGCTTTCTGCAATGGGCTACTCTGAAACAACATAAAAAGGTACACGATAATCACCTTAAGTGTCCAAAATGTAAATCAGTATTCGATAAATCCTCGGATTATGAAGATCATATGCAAAAAGTACATCAAGGGCACGATTTCAATTGCCAGTTTTGTGATAAAGCATTTGGAACAAGACTGGCTCTTGGTGTTCATATTTCAAGGAAGCATACGCAAGaaaaattcttcTGTAACCAATGCGCGTTCAGCTACTCCTCGGAAgctttattgaaaaatcatcAAGACACAGTTCATACAGACATACCCTGCGAACAATGTGGCATTGTACTGAAAAACGTACGAAATTATACTTTGCATCAGAGAGTTGTTCATGAAAGGGAGAAACGATTTTTCTGCAAATACTGCaagaaaggatttttcaaaaattgtgatgTTATTGCACACGAGCAATCGGTACATCTTAAAGTAAAGAGATTTAAATGTGACTTATGTCCTTATGAAGCCGTGTACAAGGGATCTTTTACCGTACATATGAGAGCTCATCGCAATGAAACGCCTTATGAGTGCCACCTTTGCGGTCGAGGTTTCCGGAAAAATGCGTCCTTGATAAGCCACATTAAACGACATCAAAATATAAGAGAtttcaaaTGCCCTATCGAAGGATGTGAATATGCTTATGTCGAAAAAGGCAATCTTAATTTACACCTTCGTCTAAAGCATCCCAATGGCGaacCAGCTCGAGCAAACCAAACCCGACGATCCGGGATAACTCGATCATACTTTAATGTCCCCAAAACGGATGTTTTTGTCGACGATGATGATGGTTTAAATTTTGGCTCTGATGAGGAACCACCAGCTAAAACCATCAAAATGAGACATTCTGAAGAAAGTGATCCTGACGATCCCATCGCCAATGTTCTGAAGGAGCAAAACTCTGAGCCTGCTGTGATTGTGAGGCGTAATACCAACGATCATGATTACATCGTCCATGGGAATAGCTACGGAAGTGTGATAGAAGACTGCCAAGTAGCGGAAGTGGAGGTTACTTCTAATGATTAG
- Protein Sequence
- MTSKQESITKSMDLPKCVRCFCDLFDDFQLIFDDTGLELELQKLLSVCFDMDIKVRLGEIQALCEDCLNELIDTYDIIQKNEQEGAGPSGNQIPSTKIKKENDSPEQSSGSDDDENFSDEEEKRDIKEKKDIKSKESMLKDKHALKHKTVNQDTRISKILEFVEDENSLEEIKKPNESYDVNELDDETSNLEVKVKDNDDCEEFNQVDYLDDFDEEIDFNEYKGRIIQSKFSDVCFPEEIKCRLCKTGVKTHVDLMSHTVEMHCVEEFAYPCIVDVECESMSSQEHLTLHLVFKHYDLDSLAIYSKCPECEKRFSDFSSFNKHSCYQPPGKLSRTKVDCDECGKVFKTNKRYRFHLQFHLEKRRPKACFICEKLFRDEDDFFEHVMYNHDKNLDFVCIRCDRYYTSAENFKNHQESHKNERKYACKLCPKTYIYKHFLSDHMITDHDAKSDFKCHICGKYWINKTYLKNHLLTHNKPKPTEVICCNECGFVAVDEAEAEGHLEEHEDKEVHTVTEILDRVYICEYCEMPYSSPNYLKEHRTLHKNKKFICTVCSTIFSEYKLFKLHKSLHPVYVNRRKTFAVAHYFVCDNSGCSKSFLQWATLKQHKKVHDNHLKCPKCKSVFDKSSDYEDHMQKVHQGHDFNCQFCDKAFGTRLALGVHISRKHTQEKFFCNQCAFSYSSEALLKNHQDTVHTDIPCEQCGIVLKNVRNYTLHQRVVHEREKRFFCKYCKKGFFKNCDVIAHEQSVHLKVKRFKCDLCPYEAVYKGSFTVHMRAHRNETPYECHLCGRGFRKNASLISHIKRHQNIRDFKCPIEGCEYAYVEKGNLNLHLRLKHPNGEPARANQTRRSGITRSYFNVPKTDVFVDDDDGLNFGSDEEPPAKTIKMRHSEESDPDDPIANVLKEQNSEPAVIVRRNTNDHDYIVHGNSYGSVIEDCQVAEVEVTSND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00628584;
- 90% Identity
- iTF_00937503;
- 80% Identity
- -