Ecal005231.1
Basic Information
- Insect
- Eurytoma californica
- Gene Symbol
- -
- Assembly
- GCA_035586675.1
- Location
- JAXIUT010000021.1:18539392-18541977[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.28 36 6.1 0.3 1 23 127 150 127 150 0.92 2 17 2.1 2.7e+02 3.4 4.5 1 23 180 203 180 203 0.97 3 17 0.04 5.2 8.8 3.7 2 23 282 304 282 304 0.97 4 17 2.5 3.3e+02 3.1 1.8 1 23 331 354 331 354 0.92 5 17 0.27 35 6.2 0.5 2 23 410 432 410 432 0.95 6 17 0.58 74 5.1 2.7 1 23 458 481 458 481 0.95 7 17 0.22 29 6.4 9.4 1 23 496 519 496 519 0.97 8 17 0.51 66 5.3 0.3 1 23 529 552 529 552 0.94 9 17 6.4 8.2e+02 1.9 3.9 5 23 569 587 568 587 0.97 10 17 0.01 1.3 10.6 1.5 1 23 603 626 603 626 0.98 11 17 0.0078 1 11.0 1.9 1 23 645 668 645 668 0.96 12 17 7.4e-05 0.0095 17.4 1.3 1 23 674 697 674 697 0.95 13 17 0.00052 0.066 14.7 1.2 3 23 704 725 702 725 0.93 14 17 0.0073 0.93 11.1 0.8 1 23 730 753 730 753 0.97 15 17 2e-07 2.5e-05 25.5 0.1 2 23 760 781 759 781 0.97 16 17 1.6e-05 0.0021 19.5 0.7 1 23 787 809 787 809 0.98 17 17 1.1e-06 0.00014 23.2 0.8 1 23 815 837 815 837 0.96
Sequence Information
- Coding Sequence
- ATGCCTAAATCATTCAATTCACTAACCagtctcttttcttttaatttcagacAATCAACAACTCCCGTAGTGGTAGCAACAGCAGTACCAGCACCGATACCAACACTTGTACCAATACTTCCACCACCATCAGGAGTAACGCCTAGCAGCGGTGGTAATCGTCGCTTCGTCTTCCAGAAGAAGCTCGTGAAGATCCGCCCGCTGCCGATGGCGAAGAACACGCGGATGAAGGTCGGCCGGGTGACGACGACGGCGCCGATGGAGCAGGTGTTCGTGAAGTTAGAGCCGACAGAGCTGCACTCCACGGAGTTCGAAGAGGTGACGATCGACGGCACCGAGCTCCAGGTCACCTCGCCGAACAAGGAGAGCGTCGGGGTTTACCTGTGCAAGCTCTGCAAGGTGTACTTCCCGCAGTCGCGCCTGCTGGACGAGCACAACGCGACGGTCCACGACCCCGGCCGGCAGTCGCCCACGCGCAAGAAGCTGGAGGACTCGACCGCCCAGTACAACGGCTACCGGCTGACGAATCTCGGCGTCTACCACTGCGACACCTGTTCGTTCAGCTCGAAGGTGCGCTCCACCATATCCTCGCACACGCGGCGCAAGCACGCCGATCCACTCTGGGACGCCAGCCAAGGCCTCAAGGGCGCGAAGTCGAATCAacaggaagaggaggaggaggaggagaaggtGCACGTTAATCCCGCCGAACCGATGTTCGACATCTCCGACGTGGAAGAAGTCGATGACGAGGAACTCTGGCCGGTCGAGGTGCTCGAGGACGACAATCCGGAGACGAACGAGCCGGAGGTCGATCCCTCCGATCCCAACGAGAAACTGCGCACCTGCCCTTACTGCCCGTTCCGGACCACCAAAAGTTCGACTTACCACTCGCACGTGAAGCGACGGCACCGAGAGAACTGGTTGAAGACGATAGCTCAGAAAGTCGCCGCGCTGAAGCCGGATCCCGCGGTCGAGTCCGGCCTCGACTTCAAGTGTCGGCACTGCTCTTTCCGCGCCGAGAAACGCTCGGACATCAACGAACACGTGCTTCTTAATCACGTGTCCGGCAAGGAGCTCACGGTAGCCGGAAAACGAAAACGGGAGCCGAAAATGGAAGTACCCGAACCCGTCGAATCCGCGGACGTCGACGAAGCGATGAAGGTCGAAGAGCACACGGAGGTGATGCTCGAAGAGGAGATCGAAAAGGCGCCGACGGAGAAGCCCAAGTGCTCGTTCTGCGGCTTTGAGGCGCCCAGCAAGAACGCGCTGCGGATGCACGTGACCCGCCGGCACCGCTCGGCGGTCGCGCGCCGACGCACCAAGGAGTCCGGCATCAAGCGCCAGCCGAAGGCGCTGCTCTGCACCGGCTACGCCTGCCACTACTGCACCTTCGTCTCGGCTACGGTGGCGAGCATGCGCTCGCACACCCACCGCGAGCACCCCGGGCAGCGGCAGCGCGTGGCCGAGCTGCCGGTGGCCGAGTACGACTGCCACCATTGCGACTACAAGTCGCGCTCCCGCAAGAGCATGCAGCTGCACCTGAAGCGCTGCCACACGACGCAGGCGAACGCCGAGGGCATGTTCGCCTGCAACGTCTGCTCGTACGAGACGCTGTCGCGCATGGGCCTGCAGCGGCACATCTCCATCAAGCACAACAAGCCGAAGCGCGACCCCGCCGCCCAGCCGGTCACCTTCCTCTGCCACTGCGGCTACCAGTGCCGCAACGCCAAGCTGATGGACTGGCACAGGCGGCAGCACGAGCCCCCGTCCGCGGAGTTCGGCGGCGAGAACGACGGCAACAGCTACTACTGCAACGACTGCGAGTTCTCCACGTGGACGAAGGGCCAGCTGTACTCGCACATCAGGCGGAAGCACCGGGACGCCGACGGGGCCGGCGAGGGCGCCGAGGGCGAGGCCCACGAGCCGATCTTCGTCTGCGGCCAGTGCGACTACACCAGCAAGAACAAGCACCTGATGAAGGTGCACGTGATACGCCGCCACACCGAGGAGTACAACCACGAGTGCGAGATCTGCGGCAAGAAGTACAAGATCAAGGCGGACCTGACGAACCACGTGAGGTTCCAGCACCGCGAGCAGCCGATCATCTGCGACGTCTGCGGCAAGACCTGCCGCAACAGCAACCTGCTCTACCTGCACCAGAAGTTCGCGCACTACAAGCCGGACTTCGAGTGCCACATTTGCCGGCGGCGCATGGTGAGCCAGGCGAACCTCGACGAGCACATACTCAAGCAGCACGAGCAGCGCGAGGACGTCGTGTGCGAGGAGTGCGGCAAGAGCTTCACGAGGGCGGCGCGCCTCAAGATTCACATGAGGATTCACACGGGCGTCAAGCCGTACACCTGCAAAGTCTGCTTCAAGGCCTTCGCGAGGAGAAACGGCCTGCGGCAGCACTTGCTCATTCACACCGGGCAGCGTCCCTATCTGTGCGACATCTGCGGCAAGAGCTTCACGCAGAAGACGGGCCTGATCAGCCACAGGAAGAGCCATCCGGGCTCGCATCCTCCACTGCCGAGGATTACGATCGATCACGTCTTATCGGAATTGCTGACTGAGGAGGCTTAG
- Protein Sequence
- MPKSFNSLTSLFSFNFRQSTTPVVVATAVPAPIPTLVPILPPPSGVTPSSGGNRRFVFQKKLVKIRPLPMAKNTRMKVGRVTTTAPMEQVFVKLEPTELHSTEFEEVTIDGTELQVTSPNKESVGVYLCKLCKVYFPQSRLLDEHNATVHDPGRQSPTRKKLEDSTAQYNGYRLTNLGVYHCDTCSFSSKVRSTISSHTRRKHADPLWDASQGLKGAKSNQQEEEEEEEKVHVNPAEPMFDISDVEEVDDEELWPVEVLEDDNPETNEPEVDPSDPNEKLRTCPYCPFRTTKSSTYHSHVKRRHRENWLKTIAQKVAALKPDPAVESGLDFKCRHCSFRAEKRSDINEHVLLNHVSGKELTVAGKRKREPKMEVPEPVESADVDEAMKVEEHTEVMLEEEIEKAPTEKPKCSFCGFEAPSKNALRMHVTRRHRSAVARRRTKESGIKRQPKALLCTGYACHYCTFVSATVASMRSHTHREHPGQRQRVAELPVAEYDCHHCDYKSRSRKSMQLHLKRCHTTQANAEGMFACNVCSYETLSRMGLQRHISIKHNKPKRDPAAQPVTFLCHCGYQCRNAKLMDWHRRQHEPPSAEFGGENDGNSYYCNDCEFSTWTKGQLYSHIRRKHRDADGAGEGAEGEAHEPIFVCGQCDYTSKNKHLMKVHVIRRHTEEYNHECEICGKKYKIKADLTNHVRFQHREQPIICDVCGKTCRNSNLLYLHQKFAHYKPDFECHICRRRMVSQANLDEHILKQHEQREDVVCEECGKSFTRAARLKIHMRIHTGVKPYTCKVCFKAFARRNGLRQHLLIHTGQRPYLCDICGKSFTQKTGLISHRKSHPGSHPPLPRITIDHVLSELLTEEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00713153; iTF_00713862; iTF_01381554; iTF_01380805;
- 90% Identity
- iTF_00713862;
- 80% Identity
- -