Stex004735.1
Basic Information
- Insect
- Sycophila texana
- Gene Symbol
- -
- Assembly
- GCA_035582955.1
- Location
- JAWWEN010000020.1:16173585-16175948[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.022 2.6 9.5 1.5 1 23 60 83 60 83 0.93 2 17 3 3.4e+02 2.8 5.6 1 23 113 136 113 136 0.96 3 17 0.037 4.2 8.8 3.8 2 23 209 231 209 231 0.97 4 17 0.57 65 5.1 1.0 1 23 258 281 258 281 0.95 5 17 0.96 1.1e+02 4.4 1.0 2 23 336 358 336 358 0.95 6 17 0.49 56 5.3 3.3 1 23 384 407 384 407 0.95 7 17 0.15 17 6.9 6.6 1 23 422 445 422 445 0.96 8 17 0.43 50 5.4 0.3 1 23 455 478 455 478 0.94 9 17 8.1 9.4e+02 1.4 4.9 1 23 492 514 492 514 0.94 10 17 0.0025 0.29 12.5 1.5 1 23 530 553 530 553 0.98 11 17 0.0066 0.76 11.2 1.9 1 23 571 594 571 594 0.96 12 17 2e-05 0.0023 19.1 1.3 1 23 600 623 600 623 0.95 13 17 0.00044 0.05 14.9 1.2 3 23 630 651 628 651 0.93 14 17 0.0061 0.71 11.3 0.8 1 23 656 679 656 679 0.97 15 17 1.7e-07 1.9e-05 25.6 0.1 2 23 686 707 685 707 0.97 16 17 1.4e-05 0.0016 19.6 0.7 1 23 713 735 713 735 0.98 17 17 1.5e-07 1.7e-05 25.8 0.6 1 23 741 763 741 763 0.98
Sequence Information
- Coding Sequence
- ATGGCGGCTAACACACGGATGAAGGTCGGCCGAGTGACCACCTCGACCCCGATGGAACAGGTGTTCGTGAAGATGGAACCGCAAGAGCTGCTGACCAGCACTGGGGAGTTCGAGGAGGTGACCATCGACGGTGGCGATCTACAAAACGCTCAGTTGAGCAATGACAGCGTCGTAGTTTATCTCTGCAAGCTCTGCAACGTGTGCTTCCCGCAGCCGCACATGCTAGACGAACACAACGAGACGGTCCACAAAATCGGGCGACAATCGCCGTTGGACAAGAAGTTAGAGGACTTGACCGCCCAGTACAACGGCTACCGGCTGACGAAACACGGAGTATTCCACTGCGACCACTGCTCCTTCAGCTCGAAGGTGCGCTCCACCATATCCTCGCACGCGCGGCGCAAGCACAGCGCTTCGCTTCAGGAGAGTGTCCAGGGAGTCAAAACTTCGCAGTCGAAACAGCAGAAAAAAGCCTCCGCGACTCCCGCTGAACAGACTTTCGACCTCTCCGACGTGGAAGAGGTCGACGACGAGGAACTCTGGCCAGTCGAGGTGCTCGAGGACGACAATCCGGAGACGAACGAACCGGAGGTGGATCCCTCCGATCCCAACGCGAAGCTTCGCACCTGCCCTTACTGCCCCTTCCGGACCACGAAAAATTCGACTTACCACTCGCACGTGAAGCGACGGCACCGAGAGAACTGGTTGAAGACGATAGCCGATAAAGTCGCGGCACTCAAACAAGAGCCCCTCGCCGAGCTCGGAGTTGGCTTCCAGTGTCGACACTGCCCTTTCCGCGCCGAGCTCCGTTCCGACATGAACGAGCATGTACTCTCAAGCCACGTATCCAGCGAAGAATTCACGCTGGCCGGAAAGCCCAAGCGGGAGCAAAAAGTCGAGCCCATGGAAACTACCGACTGCTACGTCGAAGCGGAGAAAGTCGAAGAACAAGAAGAATTGATGCTCAAGGATGCAGTACACGAGGCGGTACCATCCACCAAGCCCAAGTGTACCTTCTGCCAATTCGAGGCACCCACGAAGAACGCCCTGCGCATGCATGTGACTCGCCGACACCGCTCGGCCGTCGCCCGTCGACGCACCAAAGAATCCGGCATCAAGCGCCAACCGAGGGCTCTGTTCTGCACCGGCTACGCTTGCCACTACTGCAGCTTCGTCTCGGCGACCATGAGGAGCATGCGAGCGCACACCCACCGCGAGCACCCTGGCCAACAGCAGCCCATCGCCGAACTTCCCGTGAACGAGTTCGACTGCGATCAGTGCGACCACAAGTCGCGCTCCCGCAAGAACATGCAGCTGCACCTGAAGCGATGCCACACGACGCAGGCCAACGCCGAGGGCATGTTCGCCTGCAACGTCTGCTCTTACGAGACGCTGTCGCGTATGGGACTGCAGCGGCACATCTCCATCAAGCACAACAAGCCGAAGCGCGATCCTTCCGCCAAGCCGGTGACATTCCTCTGCCAGGACTGCGGCCATCACTGCCTGAATGCCAAGCTGATGGCCTGGCACAGGAGGCAGCACGAACCGCCCTCGACGGACTTCGGCGGCGAGTACGACGGATTCAGTTATTACTGCAACGACTGCGACTTCTCCACGTGGACGAAGGGCCAGCTGTACTCGCACATCAGGCGGAAGCACCGGGACGACGGTGCCGGGGAGGACGGCGAGGGCGAGTCTCACGAGCAGCTCTTCGTCTGCGGCCAGTGTGATTACACTAGTAAAAATAAGCACCTCATGAAGGTGCACGTGATACGTAGACACACCGAGGACTACAATCACGAGTGTGAGATCTGCGGGAAGAAGTACAAGATCAAGGCAGACCTGACGAATCATATCAGGTTCCAGCACCGCGAACAGCCGATTATCTGCGACGTCTGCGGCAAAACTTGCCGGAATAGCAATCTGCTCTATCTGCATCAAAAGTTCGCCCACTACAAGCCTGATTTCGAGTGCCACATCTGCCGGCGGCGGATGGTGAGCCAGGCGAACCTCGACGAGCACATTCTAAAGCAGCACGAGCAGCGCGAGGACGTCGTCTGCGAGGAGTGCGGCAAGAGCTTCACGAGAGCGGCCAGACTGAAGATTCACATGAGGATACACACCGGCGTTAAGCCGTATACCTGCAAAGTCTGCTTCAAGGCCTTCGCGAGGAGGAATGGCTTGCGGCAGCATCTGCTCATTCACACCGGGCAGCGACCCTACGTCTGCGACATTTGCGGCAAGAGCTTCACGCAAAAGACGGGCCTCATCAGTCACAGGAAAAGCCATCCCGGCTCGCACCCTCCTCTGCCGAGGATTACGATCGATCACGTGCTATCGGAACTGCTGACTGAGGAGGCTTGA
- Protein Sequence
- MAANTRMKVGRVTTSTPMEQVFVKMEPQELLTSTGEFEEVTIDGGDLQNAQLSNDSVVVYLCKLCNVCFPQPHMLDEHNETVHKIGRQSPLDKKLEDLTAQYNGYRLTKHGVFHCDHCSFSSKVRSTISSHARRKHSASLQESVQGVKTSQSKQQKKASATPAEQTFDLSDVEEVDDEELWPVEVLEDDNPETNEPEVDPSDPNAKLRTCPYCPFRTTKNSTYHSHVKRRHRENWLKTIADKVAALKQEPLAELGVGFQCRHCPFRAELRSDMNEHVLSSHVSSEEFTLAGKPKREQKVEPMETTDCYVEAEKVEEQEELMLKDAVHEAVPSTKPKCTFCQFEAPTKNALRMHVTRRHRSAVARRRTKESGIKRQPRALFCTGYACHYCSFVSATMRSMRAHTHREHPGQQQPIAELPVNEFDCDQCDHKSRSRKNMQLHLKRCHTTQANAEGMFACNVCSYETLSRMGLQRHISIKHNKPKRDPSAKPVTFLCQDCGHHCLNAKLMAWHRRQHEPPSTDFGGEYDGFSYYCNDCDFSTWTKGQLYSHIRRKHRDDGAGEDGEGESHEQLFVCGQCDYTSKNKHLMKVHVIRRHTEDYNHECEICGKKYKIKADLTNHIRFQHREQPIICDVCGKTCRNSNLLYLHQKFAHYKPDFECHICRRRMVSQANLDEHILKQHEQREDVVCEECGKSFTRAARLKIHMRIHTGVKPYTCKVCFKAFARRNGLRQHLLIHTGQRPYVCDICGKSFTQKTGLISHRKSHPGSHPPLPRITIDHVLSELLTEEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00714626;
- 90% Identity
- iTF_01380805;
- 80% Identity
- -