Ebru025118.1
Basic Information
- Insect
- Eurytoma brunniventris
- Gene Symbol
- -
- Assembly
- GCA_900475205.1
- Location
- UXGB01000222.1:88283-90829[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.21 25 6.3 0.3 1 23 127 150 127 150 0.92 2 17 4.9 5.8e+02 2.0 4.4 1 23 180 203 180 203 0.97 3 17 0.033 3.9 8.8 3.7 2 23 274 296 274 296 0.97 4 17 2.1 2.5e+02 3.2 1.8 1 23 323 346 323 346 0.92 5 17 0.23 27 6.2 0.5 2 23 397 419 397 419 0.95 6 17 0.57 67 4.9 1.9 1 23 445 468 445 468 0.95 7 17 0.064 7.5 7.9 6.3 1 23 483 506 483 506 0.97 8 17 0.43 50 5.3 0.3 1 23 516 539 516 539 0.94 9 17 5.3 6.3e+02 1.9 3.9 5 23 556 574 555 574 0.97 10 17 0.02 2.3 9.5 1.5 1 23 590 613 590 613 0.97 11 17 0.0065 0.76 11.1 1.9 1 23 632 655 632 655 0.96 12 17 6.1e-05 0.0072 17.4 1.3 1 23 661 684 661 684 0.95 13 17 0.00043 0.051 14.8 1.2 3 23 691 712 689 712 0.93 14 17 0.006 0.71 11.1 0.8 1 23 717 740 717 740 0.97 15 17 1.6e-07 1.9e-05 25.5 0.1 2 23 747 768 746 768 0.97 16 17 1.3e-05 0.0016 19.5 0.7 1 23 774 796 774 796 0.98 17 17 8.9e-07 0.0001 23.2 0.8 1 23 802 824 802 824 0.96
Sequence Information
- Coding Sequence
- CTGTGCGGTTCTCCAACGACCAAATCGTTCAATTCACTAACCAGTCCcttctcttttaatttcagaCAATCATCAACTCCCGTAATAACAGCAGTACCAGCACCAGCACTTCCACCACCATCACGGCCATCAGGAGCAGCGCCTAGCAGCGGTGGCAATCGTCGCTTCGTCTTCCAGAAGAAGCTCGTAAAGATCCGCCCGCTGCCGATGGCGACGAACACGCGGATGAAGGTCGGCCGGGTGACGACGACGGCGCCGATGGAGCAGGTGTTCGTGAAGATGGAACCGTCAGAGCCGCAGTCCACCGAGTTCGAGGAGGTGACGATCGACGGCACCGAGCTCCAGGTCACCTCCCCGAACAAGGAGAGCGTCGTCGTTTACCTGTGCAAGCTCTGCAAGGTGTACTTCCCGCAGTCGCGCTTGCTGGACGAGCACAACGAGACGGTCCACAGCGCCGGCCGGCAATCGCCCACGGGCAAGAAGCTAGAGGACTCGACCGTCCAGTACAACGGCTACCGACTGACGAAGCTCGGCGTCTACCACTGCGACTCCTGCTCGTTCAGCTCGAAGGTGCGCTCCACCATCTCCTCGCACACGCGGCGCAAGCACGCCGATCCGCTCCATACCATCAAGGGCGCTCAGTTAAGTAaacaggaggaggaggaggtgcaCGAGAATCCCGCTGAACCGATGTTCGACATCTCCGACGTGGAAGAGGTCGACGACGAGGAACTCTGGCCGGTCGAGGTGCTCGAGGACGACAATCCGGAGACGAACGAGCCAGAGGTCGATCCCTCTGATCCCAACGAGAAACTGCGCACCTGCCCCTACTGCCCGTTCCGGACCACCAAAAGTTCGACTTACCACTCGCACGTGAAGCGGCGGCACCGAGAGAACTGGTTGAAGACCATAGCTCAGAAGGTCGCCGCGCTGAAGCCGGACCCCGCGCTCGAGTCCGGCCTCGACTTCAAGTGTCGGCACTGCTCCTTCCGCGCTGAGAAACGCTCGGACATCAACGAGCACGTACTTCTGAATCACGTGTCCAGCAAGGAGCTCACGGCAGCCAGAAAACGGAAACGGGAGCCGGAAACGGAAGTCCACGAACCCGTCGACGAAGCGATGAAGGTCGAGGTCCACGAAGAAGTGATGCTCGAAGAGGAGATCGAAAAGGCGCCGACGGAGAAGCCCAAGTGCTCGTTCTGCGGCTTCGAGGCGCCCAGCAAGAACGCGCTGCGGATGCACGTGACCCGCCGGCACCGCTCGGcggtcgcgcgccgccgcacCAAGGAGTCCGGCATCAAGCGCCAGCCGAAGGCGCTGCTCTGCACCGGCTACGCCTGCCACTACTGCACCTTCATCTCGGCGACGGTGGCCAGCATGCGCGCGCACACCCACCGCGAGCACCCCGGGCAGCGGCAGCCGGTGGCCGAGCTCCCGGTGTCCGAGTACGACTGCCACCAGTGCGACTACAAGGCGCGCTCCCGCAAGAACATGCAGCTGCACCTGAAGCGCTGCCACACGACGCAGGCCAACGCCGAGGGCATGTTCGCCTGCAACGTCTGCTCGTACGAGACGCTGTCGCGCATGGGCCTGCAGCGGCACATCTCCATCAAGCACAACAAGCCGAAGCGCGACCCCGCCGCCAAGCCGGTCACCTTCCTCTGCCACTGCGGCTACCAGTGCCGCAACGCCAAGCTGATGGACTGGCACCGCCGCCAGCACGAGCCCCCGTCGGCCGAGTTCGGCGGCGAGAACGACGGCAACAGCTACTTCTGCAACGACTGCGAGTTCTCCACGTGGACGAAGGGCCAGCTGTACTCGCACATCAGGCGGAAGCACCGGGACGGCGACGGGGCCGCCGACGGCGCCGAGGCCGAGGCCCACGAGCAGATCTTCGTCTGCGGCCAGTGCGACTACACCAGCAAGAACAAGCACCTGATGAAGGTGCACGTGATCCGCCGCCACACCGAGGAGTACAACCACGAGTGCGAGATCTGCGGCAAGAAGTACAAGATCAAGGCGGACTTGACGAACCACGTGAGGTTCCAGCACCGCGAGCAGCCGATCATCTGCGACGTCTGCGGCAAGACCTGCCGCAACAGCAACCTGCTCTACCTGCACCAGAAGTTCGCCCACTACAAGCCGGACTTCGAGTGCCACATCTGCCGGCGGCGCATGGTGAGCCAGGCGAACCTCGACGAGCACATCCTCAAGCAGCACGAGCAGCGCGAGGACGTCGTGTGCGAGGAGTGCGGCAAGAGCTTCACGAGGGCGGCGCGCCTCAAGATTCACATGAGGATACACACGGGCGTCAAGCCGTACACCTGCAAGGTCTGCTTCAAGGCCTTCGCGAGGAGGAACGGCCTGCGGCAGCACTTGCTCATCCACACCGGGCAGCGGCCCTACCTGTGCGACATCTGCGGGAAGAGCTTCACGCAGAAGACGGGCCTGATCAGCCACAGGAAGAGCCATCCGGGCTCGCATCCTCCGCTGCCGAGGATTACGATCGATCACGTGCTATCGGAGTTGCTGACTGAGGAGGCTTAG
- Protein Sequence
- LCGSPTTKSFNSLTSPFSFNFRQSSTPVITAVPAPALPPPSRPSGAAPSSGGNRRFVFQKKLVKIRPLPMATNTRMKVGRVTTTAPMEQVFVKMEPSEPQSTEFEEVTIDGTELQVTSPNKESVVVYLCKLCKVYFPQSRLLDEHNETVHSAGRQSPTGKKLEDSTVQYNGYRLTKLGVYHCDSCSFSSKVRSTISSHTRRKHADPLHTIKGAQLSKQEEEEVHENPAEPMFDISDVEEVDDEELWPVEVLEDDNPETNEPEVDPSDPNEKLRTCPYCPFRTTKSSTYHSHVKRRHRENWLKTIAQKVAALKPDPALESGLDFKCRHCSFRAEKRSDINEHVLLNHVSSKELTAARKRKREPETEVHEPVDEAMKVEVHEEVMLEEEIEKAPTEKPKCSFCGFEAPSKNALRMHVTRRHRSAVARRRTKESGIKRQPKALLCTGYACHYCTFISATVASMRAHTHREHPGQRQPVAELPVSEYDCHQCDYKARSRKNMQLHLKRCHTTQANAEGMFACNVCSYETLSRMGLQRHISIKHNKPKRDPAAKPVTFLCHCGYQCRNAKLMDWHRRQHEPPSAEFGGENDGNSYFCNDCEFSTWTKGQLYSHIRRKHRDGDGAADGAEAEAHEQIFVCGQCDYTSKNKHLMKVHVIRRHTEEYNHECEICGKKYKIKADLTNHVRFQHREQPIICDVCGKTCRNSNLLYLHQKFAHYKPDFECHICRRRMVSQANLDEHILKQHEQREDVVCEECGKSFTRAARLKIHMRIHTGVKPYTCKVCFKAFARRNGLRQHLLIHTGQRPYLCDICGKSFTQKTGLISHRKSHPGSHPPLPRITIDHVLSELLTEEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00714626;
- 90% Identity
- iTF_00714626; iTF_00713153;
- 80% Identity
- -