Basic Information

Insect: Eupithecia vulgata
Gene Symbol: -
Assembly: GCA_946478135.1
Location: CAMLCK010000147.1:479141-483902[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.073 2.1e+03 -0.4 0.1 26 45 180 199 162 207 0.80

2 15 0.085 2.5e+03 -0.6 0.3 21 31 203 213 195 232 0.75

3 15 0.14 4.1e+03 -1.3 0.0 26 47 235 256 225 264 0.80

4 15 0.047 1.4e+03 0.2 0.2 22 53 260 291 255 292 0.80

5 15 0.00029 8.4 7.3 0.0 21 53 315 347 303 348 0.86

6 15 0.0049 1.4e+02 3.3 0.1 21 52 343 374 341 375 0.86

7 15 4.3e-05 1.2 9.9 0.1 23 44 373 394 365 399 0.89

8 15 0.0013 39 5.1 0.4 26 46 404 424 397 431 0.89

9 15 0.1 3e+03 -0.9 0.0 22 46 428 452 426 460 0.79

10 15 0.033 9.6e+02 0.7 0.1 21 31 455 465 442 481 0.82

11 15 0.00019 5.4 7.9 0.0 21 51 483 513 474 514 0.86

12 15 8.4e-05 2.4 9.0 0.0 21 49 511 539 508 542 0.87

13 15 0.00034 9.9 7.0 0.0 21 52 539 570 535 571 0.88

14 15 0.0017 50 4.8 0.1 21 48 567 594 563 600 0.88

15 15 0.16 4.6e+03 -1.5 0.1 21 31 596 606 591 621 0.73

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.073	2.1e+03	-0.4	0.1	26	45	180	199	162	207	0.80
2	15	0.085	2.5e+03	-0.6	0.3	21	31	203	213	195	232	0.75
3	15	0.14	4.1e+03	-1.3	0.0	26	47	235	256	225	264	0.80
4	15	0.047	1.4e+03	0.2	0.2	22	53	260	291	255	292	0.80
5	15	0.00029	8.4	7.3	0.0	21	53	315	347	303	348	0.86
6	15	0.0049	1.4e+02	3.3	0.1	21	52	343	374	341	375	0.86
7	15	4.3e-05	1.2	9.9	0.1	23	44	373	394	365	399	0.89
8	15	0.0013	39	5.1	0.4	26	46	404	424	397	431	0.89
9	15	0.1	3e+03	-0.9	0.0	22	46	428	452	426	460	0.79
10	15	0.033	9.6e+02	0.7	0.1	21	31	455	465	442	481	0.82
11	15	0.00019	5.4	7.9	0.0	21	51	483	513	474	514	0.86
12	15	8.4e-05	2.4	9.0	0.0	21	49	511	539	508	542	0.87
13	15	0.00034	9.9	7.0	0.0	21	52	539	570	535	571	0.88
14	15	0.0017	50	4.8	0.1	21	48	567	594	563	600	0.88
15	15	0.16	4.6e+03	-1.5	0.1	21	31	596	606	591	621	0.73

Sequence Information

Coding Sequence: ATGTACTTTATAGAAAACGAATATCCCCAAGAAGTTTACCAGAGGTTTACTGGAAGTTTGCTTATGGCAGGAGACAACAGACCCAGCACGGTGTGCTACATGTGCAACGCACAGTTACTAAGATGCTGGAGGTTCTATAACATGTGCCAGAAGTCGGAAAAAATTTGCACAGACCTGTATCAGAACAATCTAGAGGTGACACAGGAGAGTCTAGCTAAGCACAACCTTGGTTGGATTTACAACTTGTCTACAACACCAGTGAAATTTGTATCTTATGTTGAAGAGACAGAAATCTCTGTTAAAGAAGAAGACACTTCAGATGATGAAGTTCTGATGCCTATGTTTGTTGAGGAAATCAAAAGTGAATGCAATGTGCTTATCAGTAATGAAGCAATTGATGATAAATCTATGACTACAAGCATACATGATACCTCAAATGGAAATTGTAATGAAAGTGACATTAATAGTAGACAAAGAGACAAATcaaaatctaaaatgaaacgTGAAAGCCGTAGAGGAAATGTAGCTACAATATTTAAGTGTGATGTTTGTAAAAAGCCGTTTACTAAAAGTTTGTACTTGAAAAGGCACATGAGAAAACACACTGAGGAAAATCCATATTCTTGCAAAATATGCACTGAGAGATTTAGTTGCATGGATTCATTAAAAACTCATAATCTTGTACATACAGCAGAGATGCCGACCTGTGATGTCTGTGGCAAAACATTTGCCACAAAAACTGTTCTCAATAGACATATTATGCAAGTACACTCTGGACAAAAACCAATGGAATGTAAAGTTTGCAATAAATCATTTCCAGTCAGAGATAGTCTACGGGCGCATATGAAAATTCACGTTGGATACAAGCCATGTGTCTGCAATATCTGTGGGAAAACCTTTTTTGACAAAAGTCAACTGAAAGTCCACACTAGAATACATTCTGGAGAAAAGCCTTTTACATGTGACTTGTGCAACAAGTCATTTACTCAATTAACTATATTAAAAAGTCATATGCACCTTCACACTGGAGAGAAGCCTTATGTTTGTAAAATATGCAATAAGTCATTTCGACATCGTTCCACTTTGGCCTATCACTCACAACTCCATACTGGAGGAAAGCCATATACATGTCCTATATGCAACAGTGTCTTTGATCTGAAACCTCTTTTACGCAAGCACATGGCCACTCACACCGACAACACCTCCCATGTTTGCAAAATTTGTAACAAAGCCTTTATCCAAAGTGTTTGTCTTAGGAAGCACATGAAAATTCACACAGAGGAGAGGCGATATACTTGCAATGTGTGTGGCAAATCCTTCTTCAGAAGTACTGGATTAAACAATCACATGAAAACGCACACCGGAGAAAAACCATATACATGCAATGTGTGTGGAAAATCATTCTCTCTTAATTCAACTTTAGTGAAACACAAGAGAATACACACGGGTGAGAGACCATACTCCTGTGACGTGTGCAATAAGAAATTCAGGCTCAGCGGTGCTTTGAGTAGACACATCAAAAtgcacactggagaaaagccattCACCTGCAACATTTGCAGCAAGTCATTCATTGGCAGTGGAGAattgaaaaaacatttaaaagtaCACAGTGAAGAAAAACCATATACTTGCTACACTTGTACGAAATCATTCAGAGATAAAAAGTCCTTAAAAATTCATATTAGATTACACACTGGAGAAAAACCATACTCTTGCAGTGTCTGTTCTAAATCATTTACCCAAAGTAGTAGTTTGAGTATGCATGTGAAGAGAGTGCACAGTGAAGAGAAACCTTACAGCTGCACTGTTTGTGGGAAATCCTTTTCACTTAATTATATTTTGACCAaacacatgagaattcacactaaAGAGGAGCCACAATAG
Protein Sequence: MYFIENEYPQEVYQRFTGSLLMAGDNRPSTVCYMCNAQLLRCWRFYNMCQKSEKICTDLYQNNLEVTQESLAKHNLGWIYNLSTTPVKFVSYVEETEISVKEEDTSDDEVLMPMFVEEIKSECNVLISNEAIDDKSMTTSIHDTSNGNCNESDINSRQRDKSKSKMKRESRRGNVATIFKCDVCKKPFTKSLYLKRHMRKHTEENPYSCKICTERFSCMDSLKTHNLVHTAEMPTCDVCGKTFATKTVLNRHIMQVHSGQKPMECKVCNKSFPVRDSLRAHMKIHVGYKPCVCNICGKTFFDKSQLKVHTRIHSGEKPFTCDLCNKSFTQLTILKSHMHLHTGEKPYVCKICNKSFRHRSTLAYHSQLHTGGKPYTCPICNSVFDLKPLLRKHMATHTDNTSHVCKICNKAFIQSVCLRKHMKIHTEERRYTCNVCGKSFFRSTGLNNHMKTHTGEKPYTCNVCGKSFSLNSTLVKHKRIHTGERPYSCDVCNKKFRLSGALSRHIKMHTGEKPFTCNICSKSFIGSGELKKHLKVHSEEKPYTCYTCTKSFRDKKSLKIHIRLHTGEKPYSCSVCSKSFTQSSSLSMHVKRVHSEEKPYSCTVCGKSFSLNYILTKHMRIHTKEEPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00705647;
90% Identity: iTF_00696641;
80% Identity: iTF_00706249;