Evul002997.1
Basic Information
- Insect
- Eupithecia vulgata
- Gene Symbol
- -
- Assembly
- GCA_946478135.1
- Location
- CAMLCK010000012.1:1743668-1752198[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.14 10 7.4 4.3 1 23 163 186 163 186 0.95 2 21 5.6e-06 0.00042 21.3 4.1 1 23 189 211 189 211 0.97 3 21 1.3e-05 0.00096 20.1 1.4 1 23 246 269 246 269 0.95 4 21 1.5e-07 1.1e-05 26.2 1.0 1 23 275 298 275 298 0.97 5 21 6e-06 0.00045 21.2 0.1 1 23 324 347 324 347 0.95 6 21 2.4e-07 1.8e-05 25.6 1.8 1 23 353 376 353 376 0.97 7 21 7.3e-05 0.0055 17.8 0.2 1 23 382 404 382 404 0.98 8 21 0.00097 0.073 14.2 0.6 3 23 412 432 412 433 0.95 9 21 0.00065 0.049 14.8 0.9 1 23 455 478 455 478 0.95 10 21 1.6e-07 1.2e-05 26.1 1.2 1 23 484 507 484 507 0.98 11 21 9.6e-05 0.0072 17.4 0.2 3 23 515 536 513 536 0.95 12 21 0.0022 0.16 13.1 1.1 1 23 550 573 550 573 0.95 13 21 1e-05 0.00075 20.5 1.8 1 23 579 602 579 602 0.98 14 21 4.1e-06 0.00031 21.7 4.5 1 23 607 629 607 629 0.98 15 21 4.8e-07 3.6e-05 24.6 0.9 1 23 635 657 635 657 0.97 16 21 0.002 0.15 13.3 5.3 1 23 662 684 662 684 0.98 17 21 0.12 9.1 7.6 1.6 2 23 692 714 691 714 0.89 18 21 0.027 2 9.7 1.0 3 23 722 743 720 743 0.92 19 21 1.7e-05 0.0013 19.7 0.3 2 23 748 769 747 769 0.96 20 21 0.059 4.4 8.6 0.6 1 23 775 797 775 797 0.92 21 21 1e-05 0.00075 20.5 4.4 1 23 803 825 803 825 0.97
Sequence Information
- Coding Sequence
- atgcctCGATCTTTGTGTCGAGTGTGCTTAGCAAGTGATATACGAATGGAAGCGCTTAGCAGCTCTCGGTATCAAGAAATTTACGAGAAATACACCGGCGAGAAGCTATTCAGTGGAGATGGCTGCCCAAAAAGCCTATGCTTCCTCTGTTATGCACAGCTGGAGAAATTCTGCAGATTCTTTGAGCTTGCGCAGAGATCAGAGAGGAATCTTATTAGTTTGCTCAACTGTGGGATGCAGcTAACACCCCACACCCTGGCACCAATTGAGAGGATCCATAACCTAGCGGTCACTCCCACCAAGATTATATCCACACTGGACTGGCACTTGAAAGAAGAAGAAGTGGTGATTAAGACGGAGCTGCTTGATGACAGGAGACGATTGAAGGACATTTATGATGATGATGTCCCTGATAATGACTCGGAATCGGATCCTTTAGAAGCCCTAACAGTAAAAGCAGAAGCCCTGGACATAAAAAACACCATCCACCCATGCGAAGAATGTCCTCGCAGATTCAACTGCACTAAAGACCTCAACAAACACAAGACAACGGTCCACAAACACCATAGCTGTAATAAATGCGGAGAGACATTTAAGAAACAAGCATATTTAAAAATGCATATGAGATACCACGCTGAAGAAATCTCATTTGATATTAAAACCATCGGAGAATTACCATTTGTTGAACCTAAAATCAGTGAATTGAGCAATTTGATAGCAACGGATGGATCAAAATTTTCTTGTGTAATGTGTAGCAAGGTGTTTACCCAGAAGGGTCATTTGAAAACTCATTTGATGgcaattcacactggagaaaagccattTCCTTGTAcattatgtgataaaaagtttGTTCAGCGCAGTAACCTCTCCGCGCATATGAGATCACGGCATGTGAAGTCATTTAATAATTGGAGTATGAGTGGAGAAAGTGGAGAAATCGGAGAAGAAGACAAAAATGCTAAGCCATTCGTCTGTGCAATGTGCGGAAAAACATTTGCAATGAAATCTTACCTCCAATCTCATATAATGgcaattcacactggagaacgTCCATTTCCCTGCACTCTATGCGATCGGAAATACACACAAAAAAGCCATTTACGCGCGCATATGAGAATCGCACACGCTGTGGAGAAACCATTTGAATGCAATTACTGTGAGTTAAGGTTTGGTGATGCTGAAGAGTTGAGAAAACATGCGAAAATTCACGCGAATGAGAAGCCTCTAGGTTGTGTTACGTGTGGGAAAGTATTTCAAGCAGAAAGCGAtcttaaaaaacatattattcttCACCATGGAGAAGCTTCGCTACATTGCGATCGCATTGACATTATCAGCGAGAATGTTACCAGAAAACGCTTCCCTTGCGACCAGTGCAGTAAGACTTTCGGCTGGAAATCTCATTTAAAAACTCATATAATGgcaattcacactggagaaaggCCATTTTCTTGCAATATGTGTGAGAAGAAGTTTGTGCAGAGAAGCTCTCTTAGGGTACATATGAGAACAGCTCATACAGAGCATAAACCAATGGCCTGTGATACATGCAATAAAGCTTTTCAATCAGAAGCTAGCTTGAAAAAACATATGATCATTAACCATGGAGAAacagaagaaaataattttaaaactaacaagCGGTTTTCATGCGCGACGTGTTCTAAATCATTCGGCTGGAAATCTCATTTAAAAACTCATATAATGgcaattcacactggagaaaagccattTTCGTGCACAATTTGCGATAAAAAATTCgtattgaaaaattatttacgAACTCATATGCTGACAAGTCACTCAGGTGTAGGATTTACCTGCGAGAAATGCAATAAACGGTGCACATCAGCCAGCAACCTACGTATACACATGAGATTTCACACTGGCGAAAAGCCATATGCCTGCAGTAAATGCGACAAGTCATTTAAAAGGAATGACAGCCTCAAAGTTCATTTGGCTTCGCATCGCGGCGAGCAGTTCACTTGTAAAGTTTGCTCAGTTAAATGTACATCTAAAACAAGCTTTCAAACTCATATGCGGCTACACACAAGCCTTTTACCGCCATTCTTATGTCTGAGATGCGATGAAAAGTTCAATTCAAAGACAGATTTAGACTCGCACAACACTAAAAGCCATGCATGTGATATGCCATTCGGGTGCGATTCTTGTGAACTAAGATTCGACGATAAAAACTTACTGAAAAAACATCAGTTTCTACAGCACGAGGATAAGCTATCCTGTGATATATGCGTTAAGTCGTTTAACGCGAAAAGTGCGTTAAGAAGGCATATGTCGATTCACAGCACGGAGAAGCCATTCGCTTGTATAATCTGCAATAAATTCTACAAACAGGAGCGTATACTTAAAAAGCATATGGAGATACACACAGAAGAGAAGCAGTTCGCGTGTGACAGATGCGATAAAAAGTTCTACCAGAAATGTAACTTGACAAGTCATATGAGAATCCACTCGGGCGAAAAGCCTTTTGTTTGCGACCGGTGTGCGATACTAAAACGACTCGCACTGACGACGGTCGGCGCTGACCAGCTACGCGCCGATGATCATCGTGACACTAACCAGCCGAAGAGGGCCGAAAATTAA
- Protein Sequence
- MPRSLCRVCLASDIRMEALSSSRYQEIYEKYTGEKLFSGDGCPKSLCFLCYAQLEKFCRFFELAQRSERNLISLLNCGMQLTPHTLAPIERIHNLAVTPTKIISTLDWHLKEEEVVIKTELLDDRRRLKDIYDDDVPDNDSESDPLEALTVKAEALDIKNTIHPCEECPRRFNCTKDLNKHKTTVHKHHSCNKCGETFKKQAYLKMHMRYHAEEISFDIKTIGELPFVEPKISELSNLIATDGSKFSCVMCSKVFTQKGHLKTHLMAIHTGEKPFPCTLCDKKFVQRSNLSAHMRSRHVKSFNNWSMSGESGEIGEEDKNAKPFVCAMCGKTFAMKSYLQSHIMAIHTGERPFPCTLCDRKYTQKSHLRAHMRIAHAVEKPFECNYCELRFGDAEELRKHAKIHANEKPLGCVTCGKVFQAESDLKKHIILHHGEASLHCDRIDIISENVTRKRFPCDQCSKTFGWKSHLKTHIMAIHTGERPFSCNMCEKKFVQRSSLRVHMRTAHTEHKPMACDTCNKAFQSEASLKKHMIINHGETEENNFKTNKRFSCATCSKSFGWKSHLKTHIMAIHTGEKPFSCTICDKKFVLKNYLRTHMLTSHSGVGFTCEKCNKRCTSASNLRIHMRFHTGEKPYACSKCDKSFKRNDSLKVHLASHRGEQFTCKVCSVKCTSKTSFQTHMRLHTSLLPPFLCLRCDEKFNSKTDLDSHNTKSHACDMPFGCDSCELRFDDKNLLKKHQFLQHEDKLSCDICVKSFNAKSALRRHMSIHSTEKPFACIICNKFYKQERILKKHMEIHTEEKQFACDRCDKKFYQKCNLTSHMRIHSGEKPFVCDRCAILKRLALTTVGADQLRADDHRDTNQPKRAEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00702195;
- 90% Identity
- iTF_00699431;
- 80% Identity
- -