Basic Information

Insect: Eupithecia subumbrata
Gene Symbol: -
Assembly: GCA_949316285.1
Location: OX438645.1:6916979-6927495[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00057 0.049 15.0 1.2 1 23 287 310 287 310 0.92

2 10 0.089 7.6 8.1 1.9 1 19 322 340 322 344 0.92

3 10 3.5e-07 3e-05 25.1 0.6 2 23 350 371 349 371 0.97

4 10 0.00018 0.015 16.6 2.2 1 23 375 398 375 398 0.96

5 10 3.1e-05 0.0027 19.0 0.6 2 23 565 586 564 586 0.96

6 10 2.5 2.2e+02 3.5 1.3 2 23 606 628 605 628 0.92

7 10 1.3e-06 0.00011 23.4 4.1 1 23 634 656 634 656 0.98

8 10 0.0078 0.66 11.5 2.6 2 23 662 683 661 683 0.95

9 10 0.00052 0.045 15.1 5.6 2 23 690 712 689 712 0.97

10 10 0.32 28 6.4 1.0 3 19 750 766 749 771 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00057	0.049	15.0	1.2	1	23	287	310	287	310	0.92
2	10	0.089	7.6	8.1	1.9	1	19	322	340	322	344	0.92
3	10	3.5e-07	3e-05	25.1	0.6	2	23	350	371	349	371	0.97
4	10	0.00018	0.015	16.6	2.2	1	23	375	398	375	398	0.96
5	10	3.1e-05	0.0027	19.0	0.6	2	23	565	586	564	586	0.96
6	10	2.5	2.2e+02	3.5	1.3	2	23	606	628	605	628	0.92
7	10	1.3e-06	0.00011	23.4	4.1	1	23	634	656	634	656	0.98
8	10	0.0078	0.66	11.5	2.6	2	23	662	683	661	683	0.95
9	10	0.00052	0.045	15.1	5.6	2	23	690	712	689	712	0.97
10	10	0.32	28	6.4	1.0	3	19	750	766	749	771	0.93

Sequence Information

Coding Sequence: ATGGATTCGGACAACGTCGTAACAGACTCGGGCATGGCTTATCCCATCCTCTTCATGCCAAAGAAGTGCACAACACTTGAAACCAACTGTGAAATCTCTGATAACGTCTACATCAACGTGCACATCACGTCGCCCGACACGGAAGGGAACGACACAAGCATTTACAACGGGTATTGCAACGTGAAACTAGTGGATTCTTATAGCGTGAGCCCCAACAGTGACAGTTCATCTCCAGATACAATCAACATAGATCAGATGCCGGTCATCTTTTCTGAAGCCAGCCCGCCGGACAGCGAATCGCAGGTCTGGATAGATCCATCAAGAAGTCCCTATGTGTACAATCACTATGACCCGGCAAGCCAGGAGAGTTACTCCATCCGTGAGTCAGGTGGGTTGATAACTGTTGAGCAACACAATACGTATATCACTCAGAATGTGTACAACTGCGAGGAGGCTCCGTCGCCTGTGAATGAGGCTGGGTGGAAGCGGTTCAGGAAAGTGCAGGATTCGCTCACCGGCCAGTCCGATACCAACCTGAGTTGTTATGGGGAGGATGAGTTCGAGTGCGGGGTGTTCCTCTCTCAGCTTCCAGAGGAGATCATGAACGAGACGCATTCTAGAATCAGACATGAAAGAAAATTCTCCAGCCAGCAAGAGAACAATGCCCTCAAACAGCTGATGTCCGACGTCCAGTCATCGTCAAGGCAGCGGAAGACCATCCTGTTCCTCGGGCACGACTCCCAGTCGGGGCAGACCATACAGAACATATCCTACAACGACCCGGGGGTCAAGTGTGCAGCTGTGGAGGTGGATAATGAACTTGTTACTGACGGTTCAGCATCCACCCCAAAAAAGAAATACCAATGCGACAAATGCAAGAAACTATTCCCTCAAATCTCATCATTCCGTCAACACATGGTTggcaaacacaaaaataaaactcaagCGGATAACGAGCTCAACTTTATGTGCATGGACTGCGGGAAAAATCTGAAGAACCAGAGAAAGTTCGAGATACACTGCCTGGGCCACGGCGATCCTGACCTGGAATGCACCAAGTGCGGGAAAGTCTTCGCCTCAAAGTTCTCCCTTCGCGTCCACATGAAGATACACAATAGGAAGTATCCATGTAACTATTGTGTGAAGTCCTACGCAACCTTTCACAATCTGAAGTCCCATCTAGTGACAACACACTCTTTATTCCTCTGCGATGATGAGAACTGCGCTTTCGTGACTCAGAAGCCATCAGATCTCGAGATGCACCAGCATTGGAAGAAGACAGAAGCCAAGGATTCTACGACGCAGTACGTGGATGCTCCTGATGAGCTGGAAGAAACGTTGAAGACAGAAGTTCAGAATTTAAATCAGGAGTTTTTGAACTCTGATTTAGTTCAGGAGAGTATTTCTGAGTCGAGCAGCATCGACATTCTTAAGAGTCCGTCTAGAGAGGGGTCAAGTCAGGGGTCAAAATTTGATTTAACGAAATCAAGTGAGGAGTTAGCTAGTGAAGACTTTGTGTTACCAAGTGAAGAGTTTGTGTTATCAAGTGAAGAGAATTCAGATAAAACTGCTTCAGTGGATGATAACGAAGGAGAAAAGATCAGGCAGGCAGATTCTGTGATAGCTACAGTCATGACGAATTCTATATTTCTGCTGAGCTCGAATAAAGCCAGGGGGCACAGGTATCGTAAGACTTGTGAAGTGTGCCAGAAATCGTTCGACAGGATGGATGATCTGAAAAGGCACCTTATTGAGCACGTGATAAAGTCTACATTGGCTAAGACGCCCGTCACTATTACTGGGCGTTTGAATATTACTTGTGAGgtgTGTCAAAGGCAGGTGTTCCATAAAGTAGACAAATACAAAGCGCATCTTCGCGAGCACGCCAAGCTCACTATCTACAAGTGTACCTTCTGCGACAAAAGCTTCAGTGACTCCAGCAACTTCTCAAAGCACAAAAAGATCCACAGCCTCTCGTACCTCCAATGTGACCTCTGTCACCGCAAGTTCAACTCCAAGAAGATGATCGTGCAGCACATGGACCAGCACAAGCGGACCAAGCCGGTCCAGTGCCCGCACTGCCACCGGGTGTTCCACTTCGAGTCCATGCTGAACAAGCACGTGCGAAGCACGCATCGGAAGGAGGAGAAGTATCACTGCCGGTTCTGTGATGAGATGTCCAGCACAGTGAAAGAGAAATGGGAGCACGAGTGGCAAGCGCACAACGTGCGCAAGATGATAGTGGACTGTCGGGTGTGCGGCGCGCAGTACCGCAAGTACGCCGAGCTGAAGCGGCACTGCAGCGAGGCGCACCACATGGACATACCCACCGCCAAGAAACTCAGGAAGCGGCGCTACAAGATCGCTAGCATCTCCTACGATTTGAACTTCGAACAGTACTAA
Protein Sequence: MDSDNVVTDSGMAYPILFMPKKCTTLETNCEISDNVYINVHITSPDTEGNDTSIYNGYCNVKLVDSYSVSPNSDSSSPDTINIDQMPVIFSEASPPDSESQVWIDPSRSPYVYNHYDPASQESYSIRESGGLITVEQHNTYITQNVYNCEEAPSPVNEAGWKRFRKVQDSLTGQSDTNLSCYGEDEFECGVFLSQLPEEIMNETHSRIRHERKFSSQQENNALKQLMSDVQSSSRQRKTILFLGHDSQSGQTIQNISYNDPGVKCAAVEVDNELVTDGSASTPKKKYQCDKCKKLFPQISSFRQHMVGKHKNKTQADNELNFMCMDCGKNLKNQRKFEIHCLGHGDPDLECTKCGKVFASKFSLRVHMKIHNRKYPCNYCVKSYATFHNLKSHLVTTHSLFLCDDENCAFVTQKPSDLEMHQHWKKTEAKDSTTQYVDAPDELEETLKTEVQNLNQEFLNSDLVQESISESSSIDILKSPSREGSSQGSKFDLTKSSEELASEDFVLPSEEFVLSSEENSDKTASVDDNEGEKIRQADSVIATVMTNSIFLLSSNKARGHRYRKTCEVCQKSFDRMDDLKRHLIEHVIKSTLAKTPVTITGRLNITCEVCQRQVFHKVDKYKAHLREHAKLTIYKCTFCDKSFSDSSNFSKHKKIHSLSYLQCDLCHRKFNSKKMIVQHMDQHKRTKPVQCPHCHRVFHFESMLNKHVRSTHRKEEKYHCRFCDEMSSTVKEKWEHEWQAHNVRKMIVDCRVCGAQYRKYAELKRHCSEAHHMDIPTAKKLRKRRYKIASISYDLNFEQY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00699533;
90% Identity: iTF_00703374;
80% Identity: -