Eexi001898.1
Basic Information
- Insect
- Eupithecia exiguata
- Gene Symbol
- -
- Assembly
- GCA_947086465.1
- Location
- OX352240.1:1119231-1127743[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00013 0.0086 16.8 1.8 1 23 295 318 295 318 0.92 2 12 0.078 5 8.1 1.9 1 19 331 349 331 353 0.92 3 12 8.5e-08 5.5e-06 26.8 0.3 2 23 359 380 358 380 0.97 4 12 5.1e-05 0.0033 18.1 3.9 1 23 384 407 384 407 0.95 5 12 5.4 3.4e+02 2.3 0.2 1 20 410 431 410 433 0.93 6 12 2.9e-05 0.0019 18.8 1.7 2 23 592 613 591 613 0.96 7 12 0.98 62 4.6 0.2 2 23 633 655 632 655 0.92 8 12 1.1e-06 7e-05 23.3 4.1 1 23 661 683 661 683 0.98 9 12 0.089 5.7 7.9 0.7 2 23 689 710 688 710 0.94 10 12 0.0052 0.33 11.8 4.5 2 23 717 739 716 739 0.97 11 12 7 4.5e+02 1.9 0.2 1 14 745 758 745 764 0.79 12 12 0.38 24 5.9 0.8 3 19 777 793 776 798 0.93
Sequence Information
- Coding Sequence
- ATGGATTCGGACAACATCGTAATAGACTCTGGCATGGCTTATCCCATCCTCTTCATGCCAAAGAAGTGCACAACACTTGAAACCAACTGTGAAATCGCTGATAACGTCTACATCAACGTAAACATCACGTCGCCCGACACGGAAGGGAACGACACAAACATTTACAACGGGTATTGCAACGTGAAACTAGTGGACTCTTATAACGTGAGCCCCAACCGTGACAGATCGTCTCCGGATTCCATCGACATAGATCAGATGCCGGTCATCTTCTCTGGAGCCAGCCCGCCTTACAGCCAATCGCAGGTCTGGATTGATCCATCGAGAAGTCCCTATGTGTACAATCACTATAACCCAGCCAGTCAGGAGAGTTACTCCATCCGTGAGTCGGGTGGGCTGATAACTGTTGAGCAACATAATACGTATATCACTCAGAATGTGTATAACTGTAAGGAGTCCAATGTGTTTAACTACAAGGAGGCTCCTTCACCTGTGAAGGAGGCTGGGTGGAAGAGGTGCAGGAAAGTGCAGGAGTCTGTCACCGGGCAGTCGGACACTAACCTGAGTTATTACGGGGAGGATGAGTTTGAATGTGGGGTATTCCTATCTCAACTACCAGAGGAGATCATGAACGAGACACAGTCTAGAATCAGAGATGAAAGGAAATTCTCCAGCCAGCAAGAGAATAATGCCCTCAAACAGCTGATGTCCGGCGTCCAGTCATCATCTAGGCAGCGGAAGACCATCCTGTTCCTCGGTCATGACTCCCACTCGGGGCAGACCATACAGAACATATCCTACAATGACCCGGGGGTCAAGTGTTCTGCCGTGGAGGAGGACAATAAACTTGTTATTGATAGTTCAACAGCCAATCCAACAAAGAAATACCAATGCGACAAATGTAAGAAAGTATTCCCTCAAATCTCATCATTTCACCAACACATGGTCGGAAATCACAAAAGAAACCAAGATGAAGCCGAGAATGAACTCAGTTTTATGTGCATGGACTGCGGGAAAAATCTAAAGAACCAAAGAAAGTTCGAGATCCACTGCCTGGGGCACGGCGATCCCGAGCTAGAATGCCCGAAGTGCGGAAAAGTATTCGCAACGAAGTTCTCCCTTCGCGTCCACATGAAAATACACACTAGAAAGTATCCGTGTAACTATTGTACCAAGACTTTCGCAACCTTCCACAATCTGAAGTCCCATCTAGTGAAAAAACACTCTTTATTCATGTGCAATGATGAGAACTGCGCTTTCGTGACTCGGAAGCTCTCAGATCTCGTGCTACACCAGCATTGGGACAAGACTGGGGCCAAAGATGAATCGACGACGCAGTACGCGGACGTAGATATGGATACTGCGGAAGAGCTGGAAAATACGTTCAAGACTGAAGTTCAGGAGCTTATGAACTCTGATTTAGTTCAGGAGAACATTTCTGAGTCGAGCAGCATCGACATTCTGAAGACTCCGCCTAAAAAGGGGTCATGTCAGGGGTCCAAATCTGACTCAACGAAATCAAGTGAAGAGAACTCGGATAAAACTGAGTTATCAAATGAAGACTTTGAATTACCAAGTGAAGAGAACTCAGATAATATTGAGTTATCAAATGAAGACTTTGCATTACCAAGTGCAGAGAACTCAGATAAAACTGTTTCAGTGGATGCTGATGTCGGAGAAAGGATCAGGAAGGCAGATTCTGTGATCGCTACAGTCATGTCGAATTCCATATTTCTGCTGAGTTCGAATAATGCCAGGCGGCACAGATATCGTAAGACTTGTGAAGTGTGCCATAAATCGTTTGACAGGATGGACGACCTGAAAAGGCACCTTATTGAGCATGTGATAAAGTCTACTTTGGCTAAGACGCCCGTCACTGTTACTGGGCGTTTGAATATTACTTGCGAGGTGTGTCAAAACGCGGTGTTCAATAAAGTTGACAAATACAAAGCGCATCTTCGCGAGCACGCCAAACTTACTATCTATAAATGTACTTTCTGCGACAAAAGCTTCAGTGACTCCAGCAACTTCTCAAAGCACAAAAAGATCCACAGCCTAACCTACCTCCAATGCGATCTCTGTCTCCGCAAGTTCAACTCAAAGAAGATGATCGCCCAACACCTGGACCAACACAAGCGGACCAAGCCTGTGCAATGCAGGCTCTGCCACAGGGTGTTCCACTTCGAGTCCATGCTGAACAAGCATGTGCGGAGTACGCATCGGAAGGAGGAGAAGTACCGGTGCCGGTTCTGTGATGAGACGTTGAACACCGTGAAAGAGAAATGGGAGCACGAATGGCATGCTCACAGAGTCCGCAAGATGATCGTGGACTGCCTGGTCTGCGGCGCCCAGTACCGCAAGTACACCGAGCTGAAGCGGCACTGCATCGAGGAGCACCGCATGGACATACCCACGGCTAAGAAACTCATGAAGAGGCGGTACAACTTCGCTAAGATATCATACGATTTGAACTTCGAAGAGTACTAA
- Protein Sequence
- MDSDNIVIDSGMAYPILFMPKKCTTLETNCEIADNVYINVNITSPDTEGNDTNIYNGYCNVKLVDSYNVSPNRDRSSPDSIDIDQMPVIFSGASPPYSQSQVWIDPSRSPYVYNHYNPASQESYSIRESGGLITVEQHNTYITQNVYNCKESNVFNYKEAPSPVKEAGWKRCRKVQESVTGQSDTNLSYYGEDEFECGVFLSQLPEEIMNETQSRIRDERKFSSQQENNALKQLMSGVQSSSRQRKTILFLGHDSHSGQTIQNISYNDPGVKCSAVEEDNKLVIDSSTANPTKKYQCDKCKKVFPQISSFHQHMVGNHKRNQDEAENELSFMCMDCGKNLKNQRKFEIHCLGHGDPELECPKCGKVFATKFSLRVHMKIHTRKYPCNYCTKTFATFHNLKSHLVKKHSLFMCNDENCAFVTRKLSDLVLHQHWDKTGAKDESTTQYADVDMDTAEELENTFKTEVQELMNSDLVQENISESSSIDILKTPPKKGSCQGSKSDSTKSSEENSDKTELSNEDFELPSEENSDNIELSNEDFALPSAENSDKTVSVDADVGERIRKADSVIATVMSNSIFLLSSNNARRHRYRKTCEVCHKSFDRMDDLKRHLIEHVIKSTLAKTPVTVTGRLNITCEVCQNAVFNKVDKYKAHLREHAKLTIYKCTFCDKSFSDSSNFSKHKKIHSLTYLQCDLCLRKFNSKKMIAQHLDQHKRTKPVQCRLCHRVFHFESMLNKHVRSTHRKEEKYRCRFCDETLNTVKEKWEHEWHAHRVRKMIVDCLVCGAQYRKYTELKRHCIEEHRMDIPTAKKLMKRRYNFAKISYDLNFEEY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00701382; iTF_00704364; iTF_00703374; iTF_00705390;
- 90% Identity
- -
- 80% Identity
- -