Esub014468.1
Basic Information
- Insect
- Eupithecia subfuscata
- Gene Symbol
- -
- Assembly
- GCA_963564075.1
- Location
- OY751106.1:15611197-15621511[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00057 0.046 15.0 1.2 1 23 295 318 295 318 0.92 2 11 3.5e-07 2.8e-05 25.1 0.6 2 23 357 378 356 378 0.97 3 11 0.0002 0.016 16.4 2.4 1 23 382 405 382 405 0.96 4 11 6.5 5.2e+02 2.2 0.1 3 20 410 429 408 431 0.86 5 11 4.8e-05 0.0039 18.4 0.3 3 23 576 596 575 596 0.96 6 11 0.52 42 5.7 0.7 2 23 616 638 615 638 0.95 7 11 1.3e-06 0.0001 23.4 4.1 1 23 644 666 644 666 0.98 8 11 0.0057 0.46 11.9 2.4 2 23 672 693 671 693 0.95 9 11 0.016 1.3 10.4 5.8 2 23 700 722 699 722 0.96 10 11 9.1 7.4e+02 1.8 0.3 1 15 728 742 728 747 0.79 11 11 0.32 26 6.3 1.0 3 19 760 776 759 781 0.93
Sequence Information
- Coding Sequence
- ATGGATTCGGACAACGTCGTAATAGACTCCGGCATGGATTATCCCACCCTCTTCATGCCAAAGAAGTGCACAACActtgaaaccaactgtgaaatCTCTGATAACGTCTACATCAACGTGAACATCACGTCGCCCGATACGGAAGGGAACGACACAAGCATTTACAACGGGTTTTGCAACGTGAAACTAGTGGATTCTTATAGCGTGAGCCCCCACCGTGACAGTTCATCTCCAGATACCATCAACATAGATCAGATGCCGGTCATCTTTTCTGAAGCCAGCCCGCCGTCCAGCCAATCGCAGGTCTGGATTGATCCATCGAGAAGTCCCTATGTGTACAATCACTATGACCCGGCAAGCCAGGAGAGGTACTCCATCCGTGAGTCCGGTGGGCTGATAACCGTTGAGCAACACAATACGTATATCACTCAGAATGTGTACAACTGCAAGGAGACCAACGTGTTTAACTGCAAGGAGGCTCCGTCGCCTGTTAATGAGGCTGGGTGGAAGCGGTTCAGGAAAGTCCAGGACTCGCTCACCGGCCAGTCCGATACCAACCTGAGTTGTTACGGGGAGGATGAGTTCGAATGCGGGGTGTTCCTCTCTCAGCTACCAGAGGAGATCATGAACGAGACACAGTCTAGATTCAGAGATGAAAGAAAATTCTCCAGCCAGCAAGAGAACAATGCCCTCAAACAGCTGATGTCCGACGTCCAGTCATCGTCGAGGCAGCGGAAGACCATCCTGTTCCTCGGACACGACTCCCACTCGGGGCAGACCATACAGAACATATCCTACAACGACCCGGGGGTCAAGTGTGCAGCTGTGGAGGTGGACAATGAACTTGTTACTgATGGCTCAACACCCACCCCAAAGAAGAAATACCAATGCGACAAATGCAAGAAACTATTCCCTCAAATCTCATCATTTCGCCAACACATGGTTGGTAAACACAACAAGAATAAAAGTCAAGCCGAGAATAAGCTCAGCTTTATGTGCTGCGGGAAAAATCTAAAGAACCAGAGAAAGTTCGAGATCCACTGCCTGGGCCACGGCGACCCCGACCTGGAATGCACCAAGTGCGGGAAGGTGTTCGCCTCAAAGTTCTCTCTTCGCGTCCACATGAAGATACACAATAGGAAGTATCCATGTAACTATTGTGTTAAATCCTACGCAACCTTCCACAATCTCAAGTCCCATCTAGTGACAAGACACTCTTTATTCCTCTGCGATGATGAAAACTGCGCTTTCGTGACTCCGAAGCTATCAGATCTCGAGAAACACCAGCATTGGACCAAGACGGAAGCCAAAGAGTCTACTACGCGTTACGTGGCCGCAGATATGGATACTCCTGATGAGCTGGAAGAAACATTCAAGACAGAAGTTCATAATTCAAATCAGGAGTTTTTGAATTCTGATTTAGTTCAAGAGAGTATTTCTGAGTCGAGCAGCATCGACATTCTGAAGAGTCCGTCCAAAGAGGGGTCAAGTCAGGGATCAAAATCCGATTTAACGAAATCAAGCGAGGAGTTAGCTAGTGAAGACTTTGCGTTACCAAGTGAAGACTTTGTGGTATCAAGTGAAGAGAATTCAGTTAAAACTGCTTTTGTGGATGATGAAGGAGACAAGATCAGGGAGGCAGATTCTGTGATAGCTACAGTCATGACAAACTCTATATTTCTGCTGAGCTCGAATAAAGCCAGGGGGCACAGGTATCGTAAGATTTGTGAAGTGTGCCAGAAATCGTTCGACAGGATGGACGATCTGAAAAGACACCTAATAGAGCATGTGATAAAGTCTACATTGGCTAAGACGCCCGTCACTATTACTGGCCGTTTGAATATTACTTGTGAGgtgTGCCAATCCGAGGTGTTCCATAGAGTAGACAAATACAAAGCGCACCTTCGCGAGCACGCCAAACTCACCATCTACAAGTGTACCTTCTGCGACAAAAGCTTCAGTGACTCCAGCAACTTCTCAAAGCACAAAAAGATCCACAGCCTCAGCTACCTCCAATGCGACCTCTGCCACCGCAAGTTCAACTCCAAGAAGATGATCGCGCAGCACATGGACCAGCACAAGCGGACCAAGCCGGTCCAGTGCCCGCACTGCCACCGCTTGTTCCACTTCGAGTCCATGCTGAACAAGCACGTGCGGAACTCGCATCGCAAGGAGGAGAGGTATCGCTGTCGGTTCTGCGATCAGATGTCCAGCACCGTGAAAGAGAAATGGGAGCACGAATGGCAGGCGCACAACGTCCGCAAGATGATAGTGGACTGTCGGGTGTGCGGCGCGCAGTACCGCAAGTACGCCGAGCTGAAGCGGCACTGCAGCGAGGCGCACCACATGGACATACCCACGGCCCAGAAGCTCAGGAAGCGGCGCTACAAGATCGCTAACATCTCCTACGGTTTGAACTACGAACAGTACTAA
- Protein Sequence
- MDSDNVVIDSGMDYPTLFMPKKCTTLETNCEISDNVYINVNITSPDTEGNDTSIYNGFCNVKLVDSYSVSPHRDSSSPDTINIDQMPVIFSEASPPSSQSQVWIDPSRSPYVYNHYDPASQERYSIRESGGLITVEQHNTYITQNVYNCKETNVFNCKEAPSPVNEAGWKRFRKVQDSLTGQSDTNLSCYGEDEFECGVFLSQLPEEIMNETQSRFRDERKFSSQQENNALKQLMSDVQSSSRQRKTILFLGHDSHSGQTIQNISYNDPGVKCAAVEVDNELVTDGSTPTPKKKYQCDKCKKLFPQISSFRQHMVGKHNKNKSQAENKLSFMCCGKNLKNQRKFEIHCLGHGDPDLECTKCGKVFASKFSLRVHMKIHNRKYPCNYCVKSYATFHNLKSHLVTRHSLFLCDDENCAFVTPKLSDLEKHQHWTKTEAKESTTRYVAADMDTPDELEETFKTEVHNSNQEFLNSDLVQESISESSSIDILKSPSKEGSSQGSKSDLTKSSEELASEDFALPSEDFVVSSEENSVKTAFVDDEGDKIREADSVIATVMTNSIFLLSSNKARGHRYRKICEVCQKSFDRMDDLKRHLIEHVIKSTLAKTPVTITGRLNITCEVCQSEVFHRVDKYKAHLREHAKLTIYKCTFCDKSFSDSSNFSKHKKIHSLSYLQCDLCHRKFNSKKMIAQHMDQHKRTKPVQCPHCHRLFHFESMLNKHVRNSHRKEERYRCRFCDQMSSTVKEKWEHEWQAHNVRKMIVDCRVCGAQYRKYAELKRHCSEAHHMDIPTAQKLRKRRYKIANISYGLNYEQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00699533;
- 90% Identity
- iTF_00704364;
- 80% Identity
- -