Basic Information

Gene Symbol
nfxl1
Assembly
GCA_963564075.1
Location
OY751118.1:12400876-12403344[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 2 3.2e+04 -7.8 5.6 15 19 133 137 132 137 0.81
2 19 0.014 2.3e+02 2.7 0.7 4 10 168 174 167 174 0.97
3 19 6.8e-07 0.011 16.6 16.1 3 19 185 201 184 201 0.95
4 19 9.3e-09 0.00015 22.5 8.1 3 19 238 254 236 254 0.91
5 19 0.16 2.5e+03 -0.6 1.8 4 13 255 264 254 265 0.78
6 19 0.83 1.3e+04 -2.9 1.0 6 10 279 283 278 283 0.88
7 19 9.5e-10 1.5e-05 25.7 12.2 1 19 289 307 289 307 0.99
8 19 4e-05 0.64 10.9 20.6 3 19 344 360 336 360 0.87
9 19 0.46 7.4e+03 -2.1 1.9 7 13 364 370 364 373 0.74
10 19 5.9e-06 0.096 13.6 18.3 1 18 394 411 394 412 0.97
11 19 2.3e-08 0.00038 21.2 16.9 1 19 421 439 421 439 0.99
12 19 0.00024 3.9 8.4 5.6 10 19 488 497 485 497 0.90
13 19 0.00072 12 6.9 7.0 1 12 507 517 507 517 0.96
14 19 0.35 5.7e+03 -1.7 3.3 14 18 546 550 546 551 0.85
15 19 2 3.2e+04 -4.7 4.4 8 12 567 571 566 581 0.62
16 19 6.4e-07 0.01 16.6 5.4 1 14 587 601 587 601 0.90
17 19 0.67 1.1e+04 -2.6 1.5 15 18 612 615 611 616 0.82
18 19 8.4e-05 1.4 9.9 14.1 1 18 627 644 627 645 0.86
19 19 2e-06 0.032 15.1 12.8 1 18 686 704 686 705 0.89

Sequence Information

Coding Sequence
ATGGCGCGTCGCTACAAAGACGCAGCCGCAAAGCTGCAGCAAAACGTGCAAAAACATCTGAAGGATATGAAGGATCTCTCGTCCTCGGACGAGGAGCCGTACGAGGCCGGCGTACTGGAGAGCATGTTCCGCAGCTactgtcgcggcggcggcgacacGCACATGCTCAACAGGACTAAGAACCTCCTAGAAGAAGCCCTCAGCGGGCGCGCCGTAGCCTGCCTCATCTGCCTCAGCTCTATCAAGCGCGCGCACGCCGTGTGGAGCTGCGACCACTGCTACTCGCACTTCCACCTCGCCTGCATACAGAAGTGGGGCAACGACTCCATCAGCCTGCGCAGCATCGAGCCGCAGGCGCCGATCAGCGTCTACAGGCCGCTCAAGATCGAGTGGTGCTGTCCGAAGTGCCGCAACTCGTATAGCAAGGACGAGATCCCGCGCAAGTACCGCTGCTTCTGCAGCAAGACCGAGAACCCGCCCGTGCACCCTTGGCTGCTGCCCCACACCTGCGGGGAGGTATGCGAGAAGAGGCTCTCCACAGGGGACAACTGCAAGCACAAATGCGTGTTGCTGTGCCACCCGGGGCCGTGTCCACCGTGCCCCCAGACTGTCAATGGAATATGCTACTGTGAAAAGGAACGGAAGAAAGTCAGATGTAGTGCAGCAAGGTGGTCATGTGGCCAACAATGTAAGAAAACTTTGCTTTGTCAGACACACAAATGTGAGCTAATCTGCCACGAGGGAGAGTGTCCGTCGTGCACCCATACCAGTATCCAGCCGTGCCACTGCGGAGCTGAAAAGACCAAAAGACCCTGCGATGATCCTTTCTGGCACTGCAAAGAACCTTGCAATAAACCATTCTCATGTGGCTACCATAAATGTGAAAGAGTCTGCCATTCTGGCAGCTGTGAGGAATGTCCGAATTCGGGCATGAGATCCTGTCCCTGCGGAGCGAACCAAAGATATGTGCAATGTCCTGACACCATGGAGACCTGTCTGGGGACCTGCGGGAAGCAGCATGAGGAGTGTGTACACGGTTGCCCGGAGAAATGCCACAAGGGACCCTGCCCTCCATGCCAAGTCATGATCCAGAAGAAGTGTCACTGTGGCTCGCACATGCGCTCCTTGCCGTGCAGCAAGGAGTACAAGTGTGACACCAAGTGCAGAGGGACCAGGCCCTGCGGGAAGCATGGCTGCGCCAGGAAGTGCTGCAATGGAAACTGCCCTCCATGTGAAAAGACGTGCGACAAGCCCCTGCAGTGCGGCCGCCACAAGTGCACCACCATCTGCCACCACGGGCCCTGCTATCCCTGCCCCCTGCTATCCAAAATAACCTGCAAGTGCAAGGAAACTTACATCAGAGTCCCATGCGGGAGAGAGCGCTTCATAAAGCCACCAAAATGCAACCTCCGTTGTAAAGTGAAATACAAGTGTGGTCATATTGAGGAAAATAAGCATTACTGCCATTTCGGAGAGTGTCCTCCTTGTAAAGCCATCTGCTACAAAGCATACCCAAAGTGCGGTCATGAGTGCAAAGCCATTTGTCATGAATATAAAGCTGTAGTCTTCAAGCAGATGGAGAAACCTGCTACTCCCTGGGATATACAACCACCGAAGACTAAGATCTTGACCTTAGAATGTCCTCCCTGCAACTTACCCGTCTCCGTGGTCTGCTTCGGCGAGCATGAGACCGACAGCCAGCCGTGccacgcggcggcgcggcgcccctGCGGCCGGCCGTGCGGGAGGCCTCTTGCCTGCGGAAACCACAACTGTAATCAACTCTGCCATCTAAGCGGCCCTGACCCTAACTACCCAAATGTTCCATCCAGCTGCAAGCCTTGTAATAGAGAATGCGCTAAACTCCGTCCCGCGAAGTGCTCGCACAAGTGTGCGCGGCGCGCGTGCCACCCTGGCGCGTGCCCGCCGTGCGGCGTGCTGGAGCGCGTGCCCTGCCACTGCGCCGTCACTGAGCTGTACCTTAAGTGCACGGAGTACTGCGGTGCTACCGAGGATATGTTGTCGTGCAAGCAGCAGTGCCCCAGAAACCTGGCGTGCGGACACCGCTGCAAGAACACCTGCCACTCGGGAGCCTGCGGCGAACAGGTCTGCACCAAGAAAACTAAGGTACACTGCTCCTGCGGCAACTTGAGGAAGGAAGCGCCTTGCAATACCGTCAGAAGTGGCGATGCCAAGGTCGCGTGTGATAACACCTGCGAAGCTAAGAAAGCTGCGGCAAAGCTGGAGAAAGAGAAAGAACTACAGAGGCTGAAGCAGCTGGAGGAGGAGAGGAACAGGCGGGAGCTGGCCGAGTACGAGTGGAAGCTCAGCGGGAAGAAGAAGAAGTACAAGGAAAAGAAGGTTGTGATAGATATGCAGCAGAAGAGCTGGCTACAGGAATACTGGATGGCAATATTACCCTTTTTAGTTGTGATTATTGCTACGGTTTACTATTTATCCCTTATTTAG
Protein Sequence
MARRYKDAAAKLQQNVQKHLKDMKDLSSSDEEPYEAGVLESMFRSYCRGGGDTHMLNRTKNLLEEALSGRAVACLICLSSIKRAHAVWSCDHCYSHFHLACIQKWGNDSISLRSIEPQAPISVYRPLKIEWCCPKCRNSYSKDEIPRKYRCFCSKTENPPVHPWLLPHTCGEVCEKRLSTGDNCKHKCVLLCHPGPCPPCPQTVNGICYCEKERKKVRCSAARWSCGQQCKKTLLCQTHKCELICHEGECPSCTHTSIQPCHCGAEKTKRPCDDPFWHCKEPCNKPFSCGYHKCERVCHSGSCEECPNSGMRSCPCGANQRYVQCPDTMETCLGTCGKQHEECVHGCPEKCHKGPCPPCQVMIQKKCHCGSHMRSLPCSKEYKCDTKCRGTRPCGKHGCARKCCNGNCPPCEKTCDKPLQCGRHKCTTICHHGPCYPCPLLSKITCKCKETYIRVPCGRERFIKPPKCNLRCKVKYKCGHIEENKHYCHFGECPPCKAICYKAYPKCGHECKAICHEYKAVVFKQMEKPATPWDIQPPKTKILTLECPPCNLPVSVVCFGEHETDSQPCHAAARRPCGRPCGRPLACGNHNCNQLCHLSGPDPNYPNVPSSCKPCNRECAKLRPAKCSHKCARRACHPGACPPCGVLERVPCHCAVTELYLKCTEYCGATEDMLSCKQQCPRNLACGHRCKNTCHSGACGEQVCTKKTKVHCSCGNLRKEAPCNTVRSGDAKVACDNTCEAKKAAAKLEKEKELQRLKQLEEERNRRELAEYEWKLSGKKKKYKEKKVVIDMQQKSWLQEYWMAILPFLVVIIATVYYLSLI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2